RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 A0A1B0GU69 56 aa10.47□□□□□ -0.73
VPS28-209ENST00000528142 BRK1Q8WUW1 75 aa10.46□□□□□ -0.74
VPS28-209ENST00000528142 KRTAP3-3Q9BYR6 98 aa10.4□□□□□ -0.75
VPS28-209ENST00000528142 H1FX-AS1Q4G0G2 97 aa10.39□□□□□ -0.75
VPS28-209ENST00000528142 A6NED7 52 aa10.37□□□□□ -0.75
VPS28-209ENST00000528142 LCA10Q71F78 164 aa10.37□□□□□ -0.75
VPS28-209ENST00000528142 RBM12B-AS1Q9P1G2 102 aa10.37□□□□□ -0.75
VPS28-209ENST00000528142 KRTAP4-1Q9BYQ7 146 aa10.36□□□□□ -0.75
VPS28-209ENST00000528142 PRO0628Q9UI54 55 aa10.36□□□□□ -0.75
VPS28-209ENST00000528142 S4R3F8 94 aa10.35□□□□□ -0.75
VPS28-209ENST00000528142 MUC17Q685J3 4493 aa10.35□□□□□ -0.75
VPS28-209ENST00000528142 A8MU10 97 aa10.3□□□□□ -0.76
VPS28-209ENST00000528142 SEC61GP60059 68 aa10.3□□□□□ -0.76
VPS28-209ENST00000528142 CDC42SE1Q9NRR8 79 aa10.25□□□□□ -0.77
VPS28-209ENST00000528142 UQCR11O14957 56 aa10.19□□□□□ -0.78
VPS28-209ENST00000528142 UBR4Q5T4S7 5183 aa10.18□□□□□ -0.78
VPS28-209ENST00000528142 MUC2Q02817 5179 aa10.15□□□□□ -0.78
VPS28-209ENST00000528142 SPATA8Q6RVD6 105 aa10.15□□□□□ -0.78
VPS28-209ENST00000528142 KRTAP19-2Q3LHN2 52 aa10.14□□□□□ -0.79
VPS28-209ENST00000528142 MIR22HGQ0VDD5 57 aa10.11□□□□□ -0.79
VPS28-209ENST00000528142 A0A1B0GU33 70 aa10.1□□□□□ -0.79
VPS28-209ENST00000528142 KRTAP10-6P60371 365 aaPredicted RBP10.1□□□□□ -0.79
VPS28-209ENST00000528142 KRTAP3-2Q9BYR7 98 aa10.1□□□□□ -0.79
VPS28-209ENST00000528142 CSAG1Q6PB30 78 aa10.09□□□□□ -0.79
VPS28-209ENST00000528142 SVIPQ8NHG7 77 aa10.06□□□□□ -0.8
VPS28-209ENST00000528142 RNF213Q63HN8 5207 aa10.06□□□□□ -0.8
VPS28-209ENST00000528142 H0YAA0 97 aa10□□□□□ -0.81
VPS28-209ENST00000528142 P0C880 135 aa9.96□□□□□ -0.82
VPS28-209ENST00000528142 ADM2Q7Z4H4 148 aa9.95□□□□□ -0.82
VPS28-209ENST00000528142 PMAIP1Q13794 54 aa9.89□□□□□ -0.83
VPS28-209ENST00000528142 KRTAP13-4Q3LI77 160 aa9.86□□□□□ -0.83
VPS28-209ENST00000528142 LCE2CQ5TA81 110 aa9.85□□□□□ -0.83
VPS28-209ENST00000528142 A6NN06 94 aa9.84□□□□□ -0.83
VPS28-209ENST00000528142 FLGP20930 4061 aaPredicted RBP9.73□□□□□ -0.85
VPS28-209ENST00000528142 FAT4Q6V0I7 4981 aa9.73□□□□□ -0.85
VPS28-209ENST00000528142 M0QZ58 72 aa9.68□□□□□ -0.86
VPS28-209ENST00000528142 A0A0D9SG42 100 aa9.65□□□□□ -0.86
VPS28-209ENST00000528142 LORP23490 312 aaPredicted RBP9.6□□□□□ -0.87
VPS28-209ENST00000528142 MT1HP80294 61 aa9.6□□□□□ -0.87
VPS28-209ENST00000528142 K7ERS5 55 aa9.55□□□□□ -0.88
VPS28-209ENST00000528142 KTN1-AS1Q86SY8 53 aa9.55□□□□□ -0.88
VPS28-209ENST00000528142 R4GN34 69 aa9.54□□□□□ -0.88
VPS28-209ENST00000528142 KRTAP12-1P59990 96 aa9.47□□□□□ -0.89
VPS28-209ENST00000528142 KRTAP12-2P59991 146 aa9.47□□□□□ -0.89
VPS28-209ENST00000528142 M0R2T5 61 aa9.42□□□□□ -0.9
VPS28-209ENST00000528142 LINC01554Q52M75 96 aa9.4□□□□□ -0.91
VPS28-209ENST00000528142 SPINT4Q6UDR6 99 aa9.39□□□□□ -0.91
VPS28-209ENST00000528142 LCE2AQ5TA79 106 aaPredicted RBP9.37□□□□□ -0.91
VPS28-209ENST00000528142 CRIPTQ9P021 101 aa9.37□□□□□ -0.91
VPS28-209ENST00000528142 PRAC1Q96KF2 57 aa9.28□□□□□ -0.92
VPS28-209ENST00000528142 KRTAP9-8Q9BYQ0 159 aa9.26□□□□□ -0.93
VPS28-209ENST00000528142 ROMO1P60602 79 aa9.25□□□□□ -0.93
VPS28-209ENST00000528142 MT2AP02795 61 aa9.23□□□□□ -0.93
VPS28-209ENST00000528142 MT1FP04733 61 aa9.19□□□□□ -0.94
VPS28-209ENST00000528142 SPRR2GQ9BYE4 73 aa9.17□□□□□ -0.94
VPS28-209ENST00000528142 KRTAP19-1Q8IUB9 90 aa9.14□□□□□ -0.95
VPS28-209ENST00000528142 KRTAP10-10P60014 251 aa9.13□□□□□ -0.95
VPS28-209ENST00000528142 KRTAP25-1Q3LHN0 102 aa8.99□□□□□ -0.97
VPS28-209ENST00000528142 CAMK2N1Q7Z7J9 78 aa8.96□□□□□ -0.97
VPS28-209ENST00000528142 C10orf95Q9H7T3 257 aa8.96□□□□□ -0.97
VPS28-209ENST00000528142 KRTAP9-3Q9BYQ3 159 aa8.92□□□□□ -0.98
VPS28-209ENST00000528142 KRTAP19-8Q3LI54 63 aa8.89□□□□□ -0.99
VPS28-209ENST00000528142 PLAC4Q8WY50 150 aa8.86□□□□□ -0.99
VPS28-209ENST00000528142 MT1BP07438 61 aa8.77□□□□□ -1.01
VPS28-209ENST00000528142 LCE2BO14633 110 aa8.73□□□□□ -1.01
VPS28-209ENST00000528142 TNP1P09430 55 aa8.58□□□□□ -1.04
VPS28-209ENST00000528142 USH2AO75445 5202 aa8.54□□□□□ -1.04
VPS28-209ENST00000528142 MT1XP80297 61 aa8.54□□□□□ -1.04
VPS28-209ENST00000528142 KRTAP10-5P60370 271 aa8.53□□□□□ -1.04
VPS28-209ENST00000528142 LCE2DQ5TA82 110 aaPredicted RBP8.5□□□□□ -1.05
VPS28-209ENST00000528142 PP632Q6XCG6 107 aa8.46□□□□□ -1.06
VPS28-209ENST00000528142 KRTAP23-1A1A580 65 aa8.41□□□□□ -1.06
VPS28-209ENST00000528142 PRO2289Q9P1D8 64 aa8.33□□□□□ -1.08
VPS28-209ENST00000528142 KRTAP9-2Q9BYQ4 174 aa8.29□□□□□ -1.08
VPS28-209ENST00000528142 SSPOA2VEC9 5147 aa8.29□□□□□ -1.08
VPS28-209ENST00000528142 FSIP2Q5CZC0 6907 aa8.28□□□□□ -1.08
VPS28-209ENST00000528142 LCE3AQ5TA76 89 aa8.22□□□□□ -1.09
VPS28-209ENST00000528142 KRTAP10-7P60409 375 aaPredicted RBP8.21□□□□□ -1.1
VPS28-209ENST00000528142 KRTAP19-6Q3LI70 58 aa8.16□□□□□ -1.1
VPS28-209ENST00000528142 KRTAP10-12P60413 245 aa8.13□□□□□ -1.11
VPS28-209ENST00000528142 KRTAP8-1Q8IUC2 63 aa8.06□□□□□ -1.12
VPS28-209ENST00000528142 KRTAP15-1Q3LI76 137 aa8.04□□□□□ -1.12
VPS28-209ENST00000528142 FCGBPQ9Y6R7 5405 aaPredicted RBP7.97□□□□□ -1.13
VPS28-209ENST00000528142 CRCT1Q9UGL9 99 aa7.95□□□□□ -1.14
VPS28-209ENST00000528142 KRTAP9-6A0A140TA67 174 aa7.87□□□□□ -1.15
VPS28-209ENST00000528142 KRTAP12-3P60328 96 aa7.87□□□□□ -1.15
VPS28-209ENST00000528142 KRTAP4-8A0A0G2JLE6 195 aa7.84□□□□□ -1.15
VPS28-209ENST00000528142 KRTAP4-8Q9BYQ9 185 aa7.84□□□□□ -1.15
VPS28-209ENST00000528142 KRTAP19-5Q3LI72 72 aa7.76□□□□□ -1.17
VPS28-209ENST00000528142 KMT2DO14686 5537 aa7.75□□□□□ -1.17
VPS28-209ENST00000528142 SPRR5A0A1B0GTR4 108 aa7.66□□□□□ -1.18
VPS28-209ENST00000528142 KRTAP19-7Q3SYF9 63 aa7.62□□□□□ -1.19
VPS28-209ENST00000528142 MACF1Q9UPN3 7388 aaKnown RBP7.53□□□□□ -1.2
VPS28-209ENST00000528142 NDUFAF8A1L188 74 aa7.5□□□□□ -1.21
VPS28-209ENST00000528142 MT1EP04732 61 aa7.45□□□□□ -1.22
VPS28-209ENST00000528142 LUZP6Q538Z0 58 aa7.43□□□□□ -1.22
VPS28-209ENST00000528142 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.38□□□□□ -1.23
VPS28-209ENST00000528142 LCE3CQ5T5A8 94 aa7.38□□□□□ -1.23
VPS28-209ENST00000528142 MT1LQ93083 61 aa7.34□□□□□ -1.23
VPS28-209ENST00000528142 SYNE2Q8WXH0 6885 aaKnown RBP7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms