RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 KAAG1Q9UBP8 84 aa1.6□□□□□ -2.15
CD44-217ENST00000525348 KLK9Q2XQG4 91 aa1.59□□□□□ -2.15
CD44-217ENST00000525348 TOMM7Q9P0U1 55 aa1.59□□□□□ -2.15
CD44-217ENST00000525348 C6orf48Q9UBA6 75 aa1.59□□□□□ -2.15
CD44-217ENST00000525348 VWFP04275 2813 aa1.59□□□□□ -2.16
CD44-217ENST00000525348 NOTCH1P46531 2555 aa1.58□□□□□ -2.16
CD44-217ENST00000525348 INE1O15225 51 aa1.58□□□□□ -2.16
CD44-217ENST00000525348 PLAC4Q8WY50 150 aa1.58□□□□□ -2.16
CD44-217ENST00000525348 C10orf95Q9H7T3 257 aa1.58□□□□□ -2.16
CD44-217ENST00000525348 FLG2Q5D862 2391 aaPredicted RBP1.58□□□□□ -2.16
CD44-217ENST00000525348 HERC2O95714 4834 aa1.58□□□□□ -2.16
CD44-217ENST00000525348 DYNC2H1Q8NCM8 4307 aaKnown RBP1.57□□□□□ -2.16
CD44-217ENST00000525348 APELAP0DMC3 54 aa1.57□□□□□ -2.16
CD44-217ENST00000525348 LELP1Q5T871 98 aa1.57□□□□□ -2.16
CD44-217ENST00000525348 CLPSL2Q6UWE3 100 aa1.57□□□□□ -2.16
CD44-217ENST00000525348 Q6ZRN7 208 aaPredicted RBP1.57□□□□□ -2.16
CD44-217ENST00000525348 WNK2Q9Y3S1 2297 aa1.55□□□□□ -2.16
CD44-217ENST00000525348 K7EIL1 84 aa1.55□□□□□ -2.16
CD44-217ENST00000525348 LYNX1P0DP58 116 aa1.55□□□□□ -2.16
CD44-217ENST00000525348 DEFB1P60022 68 aa1.55□□□□□ -2.16
CD44-217ENST00000525348 RYR1P21817 5038 aa1.55□□□□□ -2.16
CD44-217ENST00000525348 SACSQ9NZJ4 4579 aa1.54□□□□□ -2.16
CD44-217ENST00000525348 UBR4Q5T4S7 5183 aa1.54□□□□□ -2.16
CD44-217ENST00000525348 LYSTQ99698 3801 aa1.54□□□□□ -2.16
CD44-217ENST00000525348 MRPL34Q9BQ48 92 aaKnown RBP1.54□□□□□ -2.16
CD44-217ENST00000525348 TENM2Q9NT68 2774 aa1.54□□□□□ -2.16
CD44-217ENST00000525348 COL7A1Q02388 2944 aa1.54□□□□□ -2.16
CD44-217ENST00000525348 ABCA13Q86UQ4 5058 aa1.53□□□□□ -2.16
CD44-217ENST00000525348 DEFB131AP59861 70 aa1.53□□□□□ -2.16
CD44-217ENST00000525348 H1FX-AS1Q4G0G2 97 aa1.53□□□□□ -2.16
CD44-217ENST00000525348 KRTAP4-1Q9BYQ7 146 aa1.53□□□□□ -2.16
CD44-217ENST00000525348 DNAH1Q9P2D7 4330 aa1.53□□□□□ -2.16
CD44-217ENST00000525348 CSMD3Q7Z407 3707 aa1.53□□□□□ -2.17
CD44-217ENST00000525348 HECTD4Q9Y4D8 3996 aa1.52□□□□□ -2.17
CD44-217ENST00000525348 DEFB130BP0DP73 79 aa1.52□□□□□ -2.17
CD44-217ENST00000525348 DEFB130AP0DP74 79 aa1.52□□□□□ -2.17
CD44-217ENST00000525348 UNQ6190/PRO20217Q6UXQ8 127 aa1.52□□□□□ -2.17
CD44-217ENST00000525348 DNAH9Q9NYC9 4486 aa1.51□□□□□ -2.17
CD44-217ENST00000525348 C10orf99Q6UWK7 81 aa1.51□□□□□ -2.17
CD44-217ENST00000525348 DEFB105AQ8NG35 78 aa1.51□□□□□ -2.17
CD44-217ENST00000525348 WNK1Q9H4A3 2382 aa1.5□□□□□ -2.17
CD44-217ENST00000525348 DNAH3Q8TD57 4116 aa1.5□□□□□ -2.17
CD44-217ENST00000525348 COX6B2Q6YFQ2 88 aa1.5□□□□□ -2.17
CD44-217ENST00000525348 KIAA1109Q2LD37 5005 aa1.5□□□□□ -2.17
CD44-217ENST00000525348 FRAS1Q86XX4 4008 aa1.49□□□□□ -2.17
CD44-217ENST00000525348 DNAH7Q8WXX0 4024 aa1.48□□□□□ -2.17
CD44-217ENST00000525348 SPRR1AP35321 89 aa1.48□□□□□ -2.17
CD44-217ENST00000525348 RPL37P61927 97 aaKnown RBP1.48□□□□□ -2.17
CD44-217ENST00000525348 STARD9Q9P2P6 4700 aa1.48□□□□□ -2.17
CD44-217ENST00000525348 DEFB108BQ8NET1 73 aa1.47□□□□□ -2.17
CD44-217ENST00000525348 FCGBPQ9Y6R7 5405 aaPredicted RBP1.46□□□□□ -2.18
CD44-217ENST00000525348 TENM3Q9P273 2699 aa1.46□□□□□ -2.18
CD44-217ENST00000525348 SPINK13Q1W4C9 94 aa1.46□□□□□ -2.18
CD44-217ENST00000525348 ROS1P08922 2347 aa1.46□□□□□ -2.18
CD44-217ENST00000525348 HERC1Q15751 4861 aa1.45□□□□□ -2.18
CD44-217ENST00000525348 HUWE1Q7Z6Z7 4374 aaKnown RBP1.45□□□□□ -2.18
CD44-217ENST00000525348 PLECQ15149 4684 aaKnown RBP1.45□□□□□ -2.18
CD44-217ENST00000525348 DNAH10Q8IVF4 4471 aa1.44□□□□□ -2.18
CD44-217ENST00000525348 RHPN1-AS1Q9BWJ2 59 aa1.44□□□□□ -2.18
CD44-217ENST00000525348 H3BUX3 64 aa1.43□□□□□ -2.18
CD44-217ENST00000525348 SPRR1BP22528 89 aa1.43□□□□□ -2.18
CD44-217ENST00000525348 KRTAP13-4Q3LI77 160 aa1.43□□□□□ -2.18
CD44-217ENST00000525348 UBE2DNLQ8IWF7 75 aa1.43□□□□□ -2.18
CD44-217ENST00000525348 USMG5Q96IX5 58 aa1.42□□□□□ -2.18
CD44-217ENST00000525348 PRLHP81277 87 aa1.41□□□□□ -2.18
CD44-217ENST00000525348 S4R3F8 94 aa1.41□□□□□ -2.18
CD44-217ENST00000525348 VPS13DQ5THJ4 4388 aa1.4□□□□□ -2.19
CD44-217ENST00000525348 DEFB136Q30KP8 78 aa1.4□□□□□ -2.19
CD44-217ENST00000525348 DYNC1H1Q14204 4646 aaKnown RBP1.4□□□□□ -2.19
CD44-217ENST00000525348 HSPG2P98160 4391 aa1.39□□□□□ -2.19
CD44-217ENST00000525348 STAB2Q8WWQ8 2551 aa1.39□□□□□ -2.19
CD44-217ENST00000525348 KMT2AQ03164 3969 aa1.39□□□□□ -2.19
CD44-217ENST00000525348 DNAH2Q9P225 4427 aa1.38□□□□□ -2.19
CD44-217ENST00000525348 SPINK1P00995 79 aa1.38□□□□□ -2.19
CD44-217ENST00000525348 HTN1P15515 57 aa1.38□□□□□ -2.19
CD44-217ENST00000525348 APLNQ9ULZ1 77 aa1.38□□□□□ -2.19
CD44-217ENST00000525348 PKHD1P08F94 4074 aa1.38□□□□□ -2.19
CD44-217ENST00000525348 PKD1P98161 4303 aa1.38□□□□□ -2.19
CD44-217ENST00000525348 FAT2Q9NYQ8 4349 aa1.37□□□□□ -2.19
CD44-217ENST00000525348 H3BUA1 57 aa1.37□□□□□ -2.19
CD44-217ENST00000525348 RNF213Q63HN8 5207 aa1.36□□□□□ -2.19
CD44-217ENST00000525348 SMR3BP02814 79 aaPredicted RBP1.36□□□□□ -2.19
CD44-217ENST00000525348 KRTAP12-1P59990 96 aa1.36□□□□□ -2.19
CD44-217ENST00000525348 Q5VSD8 79 aa1.36□□□□□ -2.19
CD44-217ENST00000525348 MYCBP2O75592 4640 aa1.36□□□□□ -2.19
CD44-217ENST00000525348 DNAH17Q9UFH2 4485 aa1.36□□□□□ -2.19
CD44-217ENST00000525348 DNAH6Q9C0G6 4158 aa1.35□□□□□ -2.19
CD44-217ENST00000525348 HMCN2Q8NDA2 5059 aa1.34□□□□□ -2.19
CD44-217ENST00000525348 DNAH11Q96DT5 4516 aa1.34□□□□□ -2.19
CD44-217ENST00000525348 A0A0D9SG42 100 aa1.33□□□□□ -2.2
CD44-217ENST00000525348 DEFB4AO15263 64 aa1.33□□□□□ -2.2
CD44-217ENST00000525348 NOP10Q9NPE3 64 aaKnown RBP1.33□□□□□ -2.2
CD44-217ENST00000525348 APOBP04114 4563 aaKnown RBP1.33□□□□□ -2.2
CD44-217ENST00000525348 VPS13BQ7Z7G8 4022 aa1.32□□□□□ -2.2
CD44-217ENST00000525348 DEFB135Q30KP9 77 aa1.31□□□□□ -2.2
CD44-217ENST00000525348 DMBT1Q9UGM3 2413 aaPredicted RBP1.3□□□□□ -2.2
CD44-217ENST00000525348 LRP1BQ9NZR2 4599 aa1.29□□□□□ -2.2
CD44-217ENST00000525348 MUC2Q02817 5179 aa1.29□□□□□ -2.2
CD44-217ENST00000525348 FAT4Q6V0I7 4981 aa1.28□□□□□ -2.2
CD44-217ENST00000525348 PRO0255Q9UI72 69 aa1.28□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 106.4 ms