RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 A0A096LNI7 61 aa4.2□□□□□ -1.74
HDAC3-216ENST00000523088 SPINK6Q6UWN8 80 aa4.2□□□□□ -1.74
HDAC3-216ENST00000523088 LRP1Q07954 4544 aaKnown RBP4.2□□□□□ -1.74
HDAC3-216ENST00000523088 MMP24-AS1A0A0U1RRL7 71 aa4.18□□□□□ -1.74
HDAC3-216ENST00000523088 COX6B2Q6YFQ2 88 aa4.17□□□□□ -1.74
HDAC3-216ENST00000523088 MRPL34Q9BQ48 92 aaKnown RBP4.15□□□□□ -1.75
HDAC3-216ENST00000523088 R4GN34 69 aa4.15□□□□□ -1.75
HDAC3-216ENST00000523088 HMCN2Q8NDA2 5059 aa4.14□□□□□ -1.75
HDAC3-216ENST00000523088 MT1HL1P0DM35 61 aa4.14□□□□□ -1.75
HDAC3-216ENST00000523088 Q6ZRX8 168 aa4.13□□□□□ -1.75
HDAC3-216ENST00000523088 TPRXLQ17RH7 258 aa4.12□□□□□ -1.75
HDAC3-216ENST00000523088 TNXBP22105 4242 aa4.12□□□□□ -1.75
HDAC3-216ENST00000523088 PLAC4Q8WY50 150 aa4.11□□□□□ -1.75
HDAC3-216ENST00000523088 CRIPTQ9P021 101 aa4.11□□□□□ -1.75
HDAC3-216ENST00000523088 H0YAA0 97 aa4.1□□□□□ -1.75
HDAC3-216ENST00000523088 INE1O15225 51 aa4.1□□□□□ -1.75
HDAC3-216ENST00000523088 UNQ6190/PRO20217Q6UXQ8 127 aa4.1□□□□□ -1.75
HDAC3-216ENST00000523088 KRTAP10-8P60410 259 aa4.09□□□□□ -1.75
HDAC3-216ENST00000523088 UBR4Q5T4S7 5183 aa4.05□□□□□ -1.76
HDAC3-216ENST00000523088 TYMSOSQ8TAI1 123 aa4.05□□□□□ -1.76
HDAC3-216ENST00000523088 KRTAP13-3Q3SY46 172 aa4.04□□□□□ -1.76
HDAC3-216ENST00000523088 IGFL1Q6UW32 110 aa4.04□□□□□ -1.76
HDAC3-216ENST00000523088 LRP2P98164 4655 aa4.03□□□□□ -1.76
HDAC3-216ENST00000523088 SPRR1AP35321 89 aa4.03□□□□□ -1.76
HDAC3-216ENST00000523088 DEFB105AQ8NG35 78 aa4.03□□□□□ -1.76
HDAC3-216ENST00000523088 LCE2DQ5TA82 110 aaPredicted RBP4.02□□□□□ -1.77
HDAC3-216ENST00000523088 KRTAP1-4P0C5Y4 121 aa4.01□□□□□ -1.77
HDAC3-216ENST00000523088 KRTAP7-1Q8IUC3 87 aa4.01□□□□□ -1.77
HDAC3-216ENST00000523088 H1FX-AS1Q4G0G2 97 aa4□□□□□ -1.77
HDAC3-216ENST00000523088 RPL37P61927 97 aaKnown RBP3.95□□□□□ -1.78
HDAC3-216ENST00000523088 KRTAP13-1Q8IUC0 172 aa3.95□□□□□ -1.78
HDAC3-216ENST00000523088 RNF213Q63HN8 5207 aa3.94□□□□□ -1.78
HDAC3-216ENST00000523088 SPRR1BP22528 89 aa3.94□□□□□ -1.78
HDAC3-216ENST00000523088 KRTAP3-3Q9BYR6 98 aa3.94□□□□□ -1.78
HDAC3-216ENST00000523088 KRTAP3-2Q9BYR7 98 aa3.94□□□□□ -1.78
HDAC3-216ENST00000523088 IGKV2D-30A0A075B6S6 120 aa3.92□□□□□ -1.78
HDAC3-216ENST00000523088 IGKV2-30P06310 120 aa3.92□□□□□ -1.78
HDAC3-216ENST00000523088 PRLHP81277 87 aa3.91□□□□□ -1.78
HDAC3-216ENST00000523088 LPAP08519 4548 aa3.89□□□□□ -1.79
HDAC3-216ENST00000523088 KRTAP13-2Q52LG2 175 aa3.88□□□□□ -1.79
HDAC3-216ENST00000523088 KRTAP12-2P59991 146 aa3.87□□□□□ -1.79
HDAC3-216ENST00000523088 RPS29P62273 56 aaKnown RBP3.87□□□□□ -1.79
HDAC3-216ENST00000523088 XP32Q5T750 250 aa3.87□□□□□ -1.79
HDAC3-216ENST00000523088 SPINK1P00995 79 aa3.86□□□□□ -1.79
HDAC3-216ENST00000523088 C10orf95Q9H7T3 257 aa3.82□□□□□ -1.8
HDAC3-216ENST00000523088 MUC2Q02817 5179 aa3.81□□□□□ -1.8
HDAC3-216ENST00000523088 PP632Q6XCG6 107 aa3.77□□□□□ -1.81
HDAC3-216ENST00000523088 KRTAP3-1Q9BYR8 98 aa3.77□□□□□ -1.81
HDAC3-216ENST00000523088 MUC17Q685J3 4493 aa3.75□□□□□ -1.81
HDAC3-216ENST00000523088 FAT4Q6V0I7 4981 aa3.72□□□□□ -1.81
HDAC3-216ENST00000523088 LCE2AQ5TA79 106 aaPredicted RBP3.72□□□□□ -1.81
HDAC3-216ENST00000523088 SPRR5A0A1B0GTR4 108 aa3.67□□□□□ -1.82
HDAC3-216ENST00000523088 KRTAP9-2Q9BYQ4 174 aa3.66□□□□□ -1.82
HDAC3-216ENST00000523088 S4R3F8 94 aa3.65□□□□□ -1.83
HDAC3-216ENST00000523088 C9orf92A6NGG3 77 aa3.62□□□□□ -1.83
HDAC3-216ENST00000523088 KRTAP4-1Q9BYQ7 146 aa3.59□□□□□ -1.83
HDAC3-216ENST00000523088 KRTAP9-6A0A140TA67 174 aa3.56□□□□□ -1.84
HDAC3-216ENST00000523088 LCE2CQ5TA81 110 aa3.54□□□□□ -1.84
HDAC3-216ENST00000523088 MT1HP80294 61 aa3.53□□□□□ -1.84
HDAC3-216ENST00000523088 KRTAP19-2Q3LHN2 52 aa3.53□□□□□ -1.84
HDAC3-216ENST00000523088 M0R2T5 61 aa3.52□□□□□ -1.85
HDAC3-216ENST00000523088 KRTAP10-6P60371 365 aaPredicted RBP3.49□□□□□ -1.85
HDAC3-216ENST00000523088 FSIP2Q5CZC0 6907 aa3.49□□□□□ -1.85
HDAC3-216ENST00000523088 FLGP20930 4061 aaPredicted RBP3.49□□□□□ -1.85
HDAC3-216ENST00000523088 LORP23490 312 aaPredicted RBP3.48□□□□□ -1.85
HDAC3-216ENST00000523088 KRTAP12-1P59990 96 aa3.47□□□□□ -1.85
HDAC3-216ENST00000523088 CRCT1Q9UGL9 99 aa3.46□□□□□ -1.86
HDAC3-216ENST00000523088 A0A0D9SG42 100 aa3.44□□□□□ -1.86
HDAC3-216ENST00000523088 KRTAP13-4Q3LI77 160 aa3.44□□□□□ -1.86
HDAC3-216ENST00000523088 M0QZ58 72 aa3.41□□□□□ -1.86
HDAC3-216ENST00000523088 KRTAP9-8Q9BYQ0 159 aa3.32□□□□□ -1.88
HDAC3-216ENST00000523088 MT2AP02795 61 aa3.28□□□□□ -1.88
HDAC3-216ENST00000523088 KRTAP10-10P60014 251 aa3.27□□□□□ -1.89
HDAC3-216ENST00000523088 LCE2BO14633 110 aa3.26□□□□□ -1.89
HDAC3-216ENST00000523088 MT1FP04733 61 aa3.24□□□□□ -1.89
HDAC3-216ENST00000523088 USH2AO75445 5202 aa3.23□□□□□ -1.89
HDAC3-216ENST00000523088 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.22□□□□□ -1.89
HDAC3-216ENST00000523088 KRTAP9-3Q9BYQ3 159 aa3.22□□□□□ -1.89
HDAC3-216ENST00000523088 KRTAP2-2Q9BYT5 123 aa3.22□□□□□ -1.89
HDAC3-216ENST00000523088 SSPOA2VEC9 5147 aa3.21□□□□□ -1.89
HDAC3-216ENST00000523088 KRTAP9-7A8MTY7 169 aa3.2□□□□□ -1.9
HDAC3-216ENST00000523088 KRTAP19-1Q8IUB9 90 aa3.17□□□□□ -1.9
HDAC3-216ENST00000523088 FCGBPQ9Y6R7 5405 aaPredicted RBP3.16□□□□□ -1.9
HDAC3-216ENST00000523088 KRTAP19-6Q3LI70 58 aa3.15□□□□□ -1.91
HDAC3-216ENST00000523088 KRTAP19-4Q3LI73 84 aa3.13□□□□□ -1.91
HDAC3-216ENST00000523088 SYNE2Q8WXH0 6885 aaKnown RBP3.12□□□□□ -1.91
HDAC3-216ENST00000523088 MACF1Q9UPN3 7388 aaKnown RBP3.12□□□□□ -1.91
HDAC3-216ENST00000523088 LOC100996750A0A140TA64 210 aa3.03□□□□□ -1.92
HDAC3-216ENST00000523088 SPRR2GQ9BYE4 73 aa3.03□□□□□ -1.92
HDAC3-216ENST00000523088 KRTAP4-6Q9BYQ5 205 aa3.03□□□□□ -1.92
HDAC3-216ENST00000523088 KRTAP6-3Q3LI67 103 aa3.02□□□□□ -1.93
HDAC3-216ENST00000523088 TNP1P09430 55 aa3.01□□□□□ -1.93
HDAC3-216ENST00000523088 KRTAP19-8Q3LI54 63 aa3□□□□□ -1.93
HDAC3-216ENST00000523088 LCE5AQ5TCM9 118 aa3□□□□□ -1.93
HDAC3-216ENST00000523088 MT1BP07438 61 aa2.96□□□□□ -1.94
HDAC3-216ENST00000523088 KRTAP10-5P60370 271 aa2.95□□□□□ -1.94
HDAC3-216ENST00000523088 NEBP20929 6669 aa2.94□□□□□ -1.94
HDAC3-216ENST00000523088 MT3P25713 68 aa2.89□□□□□ -1.95
HDAC3-216ENST00000523088 MUC12Q9UKN1 5478 aa2.89□□□□□ -1.95
HDAC3-216ENST00000523088 KRTAP5-9P26371 169 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 99.4 ms