RNA–Protein interactions for RNA: ENST00000512107.5

MATR3-238, Transcript of matrin 3, human

TSL 4

Gene MATR3, Length 579 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-238	ENST00000512107	MT2A	P02795	61 aa		6.96	□□□□□ -1.3
MATR3-238	ENST00000512107	LCA10	Q71F78	164 aa		6.95	□□□□□ -1.3
MATR3-238	ENST00000512107	C20orf197	Q8N268	126 aa		6.95	□□□□□ -1.3
MATR3-238	ENST00000512107	CYSTM1	Q9H1C7	97 aa		6.93	□□□□□ -1.3
MATR3-238	ENST00000512107		S4R3F8	94 aa		6.93	□□□□□ -1.3
MATR3-238	ENST00000512107	MT1F	P04733	61 aa		6.92	□□□□□ -1.3
MATR3-238	ENST00000512107	COX7C	P15954	63 aa		6.91	□□□□□ -1.3
MATR3-238	ENST00000512107	DMAC1	Q96GE9	116 aa		6.87	□□□□□ -1.31
MATR3-238	ENST00000512107		A8MUN3	132 aa		6.84	□□□□□ -1.31
MATR3-238	ENST00000512107	ANAPC13	Q9BS18	74 aa		6.84	□□□□□ -1.31
MATR3-238	ENST00000512107	CCDC179	H3BU77	68 aa		6.82	□□□□□ -1.32
MATR3-238	ENST00000512107	KRTAP10-10	P60014	251 aa		6.79	□□□□□ -1.32
MATR3-238	ENST00000512107	KRTAP9-3	Q9BYQ3	159 aa		6.79	□□□□□ -1.32
MATR3-238	ENST00000512107	CSAG1	Q6PB30	78 aa		6.78	□□□□□ -1.32
MATR3-238	ENST00000512107		H7BZZ5	65 aa		6.77	□□□□□ -1.33
MATR3-238	ENST00000512107	SPANXA2-OT1	Q8N9U9	137 aa		6.75	□□□□□ -1.33
MATR3-238	ENST00000512107	NDUFC1	O43677	76 aa		6.72	□□□□□ -1.33
MATR3-238	ENST00000512107	LCE2B	O14633	110 aa		6.71	□□□□□ -1.34
MATR3-238	ENST00000512107	ACYP2	P14621	99 aa		6.71	□□□□□ -1.34
MATR3-238	ENST00000512107	USH2A	O75445	5202 aa		6.67	□□□□□ -1.34
MATR3-238	ENST00000512107	KRTAP19-1	Q8IUB9	90 aa		6.63	□□□□□ -1.35
MATR3-238	ENST00000512107	ADM2	Q7Z4H4	148 aa		6.61	□□□□□ -1.35
MATR3-238	ENST00000512107	COA5	Q86WW8	74 aa		6.6	□□□□□ -1.35
MATR3-238	ENST00000512107		H0YAA0	97 aa		6.59	□□□□□ -1.35
MATR3-238	ENST00000512107		P0C880	135 aa		6.58	□□□□□ -1.36
MATR3-238	ENST00000512107	CHKB-CPT1B	H3BT56	60 aa		6.56	□□□□□ -1.36
MATR3-238	ENST00000512107	SPRR2G	Q9BYE4	73 aa		6.52	□□□□□ -1.37
MATR3-238	ENST00000512107	SSPO	A2VEC9	5147 aa		6.52	□□□□□ -1.37
MATR3-238	ENST00000512107	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	6.51	□□□□□ -1.37
MATR3-238	ENST00000512107	SYNE2	Q8WXH0	6885 aa	Known RBP	6.5	□□□□□ -1.37
MATR3-238	ENST00000512107	MACF1	Q9UPN3	7388 aa	Known RBP	6.48	□□□□□ -1.37
MATR3-238	ENST00000512107	MT1B	P07438	61 aa		6.46	□□□□□ -1.38
MATR3-238	ENST00000512107	SPTSSB	Q8NFR3	76 aa		6.46	□□□□□ -1.38
MATR3-238	ENST00000512107	KRTAP19-8	Q3LI54	63 aa		6.45	□□□□□ -1.38
MATR3-238	ENST00000512107	TMEM258	P61165	79 aa		6.43	□□□□□ -1.38
MATR3-238	ENST00000512107	ATP5E	P56381	51 aa	Predicted RBP	6.41	□□□□□ -1.38
MATR3-238	ENST00000512107	CRIPT	Q9P021	101 aa		6.41	□□□□□ -1.38
MATR3-238	ENST00000512107	PCP4	P48539	62 aa		6.4	□□□□□ -1.38
MATR3-238	ENST00000512107		M0QZ58	72 aa		6.34	□□□□□ -1.39
MATR3-238	ENST00000512107	KRTAP13-4	Q3LI77	160 aa		6.34	□□□□□ -1.39
MATR3-238	ENST00000512107		Q5VV11	94 aa		6.33	□□□□□ -1.4
MATR3-238	ENST00000512107	KRTAP6-3	Q3LI67	103 aa		6.32	□□□□□ -1.4
MATR3-238	ENST00000512107	KRTAP19-6	Q3LI70	58 aa		6.32	□□□□□ -1.4
MATR3-238	ENST00000512107		R4GN34	69 aa		6.31	□□□□□ -1.4
MATR3-238	ENST00000512107	KRTAP20-1	Q3LI63	56 aa		6.3	□□□□□ -1.4
MATR3-238	ENST00000512107	SERP1	Q9Y6X1	66 aa		6.25	□□□□□ -1.41
MATR3-238	ENST00000512107	LINC01554	Q52M75	96 aa		6.23	□□□□□ -1.41
MATR3-238	ENST00000512107	LINC01558	Q9Y6Z2	57 aa		6.2	□□□□□ -1.42
MATR3-238	ENST00000512107	SPATA8	Q6RVD6	105 aa		6.19	□□□□□ -1.42
MATR3-238	ENST00000512107		A0A1B0GU69	56 aa		6.18	□□□□□ -1.42
MATR3-238	ENST00000512107	SEC61G	P60059	68 aa		6.18	□□□□□ -1.42
MATR3-238	ENST00000512107	NEB	P20929	6669 aa		6.17	□□□□□ -1.42
MATR3-238	ENST00000512107	KRTAP10-5	P60370	271 aa		6.17	□□□□□ -1.42
MATR3-238	ENST00000512107		A0A1B0GU33	70 aa		6.16	□□□□□ -1.42
MATR3-238	ENST00000512107	MT1X	P80297	61 aa		6.13	□□□□□ -1.43
MATR3-238	ENST00000512107		A6NN06	94 aa		6.1	□□□□□ -1.43
MATR3-238	ENST00000512107	PLAC4	Q8WY50	150 aa		6.1	□□□□□ -1.43
MATR3-238	ENST00000512107		A0A0D9SG42	100 aa		6.08	□□□□□ -1.44
MATR3-238	ENST00000512107		A8MU10	97 aa		6.06	□□□□□ -1.44
MATR3-238	ENST00000512107	PRR15L	Q9BU68	103 aa		6.05	□□□□□ -1.44
MATR3-238	ENST00000512107		Q1T7F1	81 aa		6.03	□□□□□ -1.44
MATR3-238	ENST00000512107	RPS28	P62857	69 aa	Known RBP	6.02	□□□□□ -1.45
MATR3-238	ENST00000512107	SMIM26	A0A096LP01	95 aa		6.01	□□□□□ -1.45
MATR3-238	ENST00000512107	KRTAP12-1	P59990	96 aa		6.01	□□□□□ -1.45
MATR3-238	ENST00000512107	PSPHP1	O15172	72 aa		5.99	□□□□□ -1.45
MATR3-238	ENST00000512107	KRTAP12-2	P59991	146 aa		5.99	□□□□□ -1.45
MATR3-238	ENST00000512107	MUC12	Q9UKN1	5478 aa		5.97	□□□□□ -1.45
MATR3-238	ENST00000512107	SPINT4	Q6UDR6	99 aa		5.93	□□□□□ -1.46
MATR3-238	ENST00000512107		V9GYY9	64 aa		5.92	□□□□□ -1.46
MATR3-238	ENST00000512107	KRTAP2-3	P0C7H8	128 aa		5.9	□□□□□ -1.46
MATR3-238	ENST00000512107	KRTAP2-4	Q9BYR9	128 aa		5.9	□□□□□ -1.46
MATR3-238	ENST00000512107	PRO2289	Q9P1D8	64 aa		5.9	□□□□□ -1.46
MATR3-238	ENST00000512107	UQCR11	O14957	56 aa		5.88	□□□□□ -1.47
MATR3-238	ENST00000512107	KRTAP10-7	P60409	375 aa	Predicted RBP	5.88	□□□□□ -1.47
MATR3-238	ENST00000512107	CAMK2N1	Q7Z7J9	78 aa		5.84	□□□□□ -1.47
MATR3-238	ENST00000512107	MIR22HG	Q0VDD5	57 aa		5.83	□□□□□ -1.48
MATR3-238	ENST00000512107	KMT2D	O14686	5537 aa		5.81	□□□□□ -1.48
MATR3-238	ENST00000512107	KRTAP4-8	A0A0G2JLE6	195 aa		5.79	□□□□□ -1.48
MATR3-238	ENST00000512107	KRTAP10-12	P60413	245 aa		5.79	□□□□□ -1.48
MATR3-238	ENST00000512107	KRTAP4-8	Q9BYQ9	185 aa		5.79	□□□□□ -1.48
MATR3-238	ENST00000512107	C10orf95	Q9H7T3	257 aa		5.75	□□□□□ -1.49
MATR3-238	ENST00000512107		A6NED7	52 aa		5.73	□□□□□ -1.49
MATR3-238	ENST00000512107	MDN1	Q9NU22	5596 aa		5.73	□□□□□ -1.49
MATR3-238	ENST00000512107	GPR98	Q8WXG9	6306 aa		5.69	□□□□□ -1.5
MATR3-238	ENST00000512107	KRTAP5-9	P26371	169 aa		5.66	□□□□□ -1.5
MATR3-238	ENST00000512107	KRTAP2-2	Q9BYT5	123 aa		5.65	□□□□□ -1.5
MATR3-238	ENST00000512107	KRTAP2-1	Q9BYU5	128 aa		5.65	□□□□□ -1.5
MATR3-238	ENST00000512107	KRTAP8-1	Q8IUC2	63 aa		5.62	□□□□□ -1.51
MATR3-238	ENST00000512107	CDC42SE1	Q9NRR8	79 aa		5.58	□□□□□ -1.52
MATR3-238	ENST00000512107	SPRR2F	Q96RM1	72 aa		5.55	□□□□□ -1.52
MATR3-238	ENST00000512107	SPRR2E	P22531	72 aa		5.51	□□□□□ -1.53
MATR3-238	ENST00000512107	SPRR2B	P35325	72 aa		5.51	□□□□□ -1.53
MATR3-238	ENST00000512107	SPRR2A	P35326	72 aa		5.51	□□□□□ -1.53
MATR3-238	ENST00000512107		K7ERS5	55 aa		5.5	□□□□□ -1.53
MATR3-238	ENST00000512107	TNP1	P09430	55 aa		5.49	□□□□□ -1.53
MATR3-238	ENST00000512107	KRTAP19-7	Q3SYF9	63 aa		5.49	□□□□□ -1.53
MATR3-238	ENST00000512107	LCE3A	Q5TA76	89 aa		5.49	□□□□□ -1.53
MATR3-238	ENST00000512107	KRTAP19-5	Q3LI72	72 aa		5.43	□□□□□ -1.54
MATR3-238	ENST00000512107	LCE1A	Q5T7P2	110 aa		5.41	□□□□□ -1.54
MATR3-238	ENST00000512107	MT1E	P04732	61 aa		5.4	□□□□□ -1.54

Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms