RNA–Protein interactions for RNA: ENST00000504557.1

HOXC9-202, Transcript of homeobox C9, humanhuman

TSL 3

Gene HOXC9, Length 581 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-202ENST00000504557 LINC00643Q86TS7 51 aa6.53□□□□□ -1.36
HOXC9-202ENST00000504557 ATOX1O00244 68 aa6.49□□□□□ -1.37
HOXC9-202ENST00000504557 LINC00208Q96KT6 92 aa6.46□□□□□ -1.38
HOXC9-202ENST00000504557 MACF1Q9UPN3 7388 aaKnown RBP6.45□□□□□ -1.38
HOXC9-202ENST00000504557 KLKP1Q107X0 134 aa6.42□□□□□ -1.38
HOXC9-202ENST00000504557 MP68P56378 58 aa6.41□□□□□ -1.38
HOXC9-202ENST00000504557 J3QR89 54 aa6.4□□□□□ -1.38
HOXC9-202ENST00000504557 Q5VV11 94 aa6.4□□□□□ -1.38
HOXC9-202ENST00000504557 SYNE2Q8WXH0 6885 aaKnown RBP6.39□□□□□ -1.39
HOXC9-202ENST00000504557 NDUFC1O43677 76 aa6.39□□□□□ -1.39
HOXC9-202ENST00000504557 OCR1Q9BZK8 76 aa6.39□□□□□ -1.39
HOXC9-202ENST00000504557 SPRR2GQ9BYE4 73 aa6.37□□□□□ -1.39
HOXC9-202ENST00000504557 MT1BP07438 61 aa6.36□□□□□ -1.39
HOXC9-202ENST00000504557 SCGB1A1P11684 91 aa6.35□□□□□ -1.39
HOXC9-202ENST00000504557 LCE3BQ5TA77 95 aa6.35□□□□□ -1.39
HOXC9-202ENST00000504557 KRTAP4-12Q9BQ66 201 aa6.35□□□□□ -1.39
HOXC9-202ENST00000504557 IMUPQ9GZP8 106 aa6.34□□□□□ -1.39
HOXC9-202ENST00000504557 A6NN06 94 aa6.33□□□□□ -1.4
HOXC9-202ENST00000504557 A8MUN3 132 aa6.33□□□□□ -1.4
HOXC9-202ENST00000504557 KRTAP19-8Q3LI54 63 aa6.33□□□□□ -1.4
HOXC9-202ENST00000504557 ADM2Q7Z4H4 148 aa6.29□□□□□ -1.4
HOXC9-202ENST00000504557 CRIPTQ9P021 101 aa6.28□□□□□ -1.4
HOXC9-202ENST00000504557 H3BPC8 53 aa6.25□□□□□ -1.41
HOXC9-202ENST00000504557 H0YAA0 97 aa6.23□□□□□ -1.41
HOXC9-202ENST00000504557 MT-ATP8P03928 68 aa6.22□□□□□ -1.41
HOXC9-202ENST00000504557 KRTAP10-5P60370 271 aa6.2□□□□□ -1.42
HOXC9-202ENST00000504557 KRTAP6-3Q3LI67 103 aa6.19□□□□□ -1.42
HOXC9-202ENST00000504557 KRTAP9-9Q9BYP9 154 aa6.19□□□□□ -1.42
HOXC9-202ENST00000504557 KRTAP9-4Q9BYQ2 154 aa6.19□□□□□ -1.42
HOXC9-202ENST00000504557 DMAC1Q96GE9 116 aa6.18□□□□□ -1.42
HOXC9-202ENST00000504557 K7ERU9 68 aa6.16□□□□□ -1.42
HOXC9-202ENST00000504557 P0C880 135 aa6.14□□□□□ -1.43
HOXC9-202ENST00000504557 R4GN34 69 aa6.12□□□□□ -1.43
HOXC9-202ENST00000504557 TRAV7A0A075B6U4 112 aa6.11□□□□□ -1.43
HOXC9-202ENST00000504557 KRTAP4-8A0A0G2JLE6 195 aa6.11□□□□□ -1.43
HOXC9-202ENST00000504557 M0QZ58 72 aa6.09□□□□□ -1.43
HOXC9-202ENST00000504557 C20orf197Q8N268 126 aa6.09□□□□□ -1.43
HOXC9-202ENST00000504557 SMIM20Q8N5G0 67 aa6.09□□□□□ -1.43
HOXC9-202ENST00000504557 ACYP2P14621 99 aa6.07□□□□□ -1.44
HOXC9-202ENST00000504557 PLAC4Q8WY50 150 aa6.07□□□□□ -1.44
HOXC9-202ENST00000504557 LINC01554Q52M75 96 aa6.06□□□□□ -1.44
HOXC9-202ENST00000504557 SNURFQ9Y675 71 aa6.06□□□□□ -1.44
HOXC9-202ENST00000504557 CHKB-CPT1BH3BT56 60 aa6.02□□□□□ -1.45
HOXC9-202ENST00000504557 PRO2289Q9P1D8 64 aa6□□□□□ -1.45
HOXC9-202ENST00000504557 SPTSSBQ8NFR3 76 aa5.99□□□□□ -1.45
HOXC9-202ENST00000504557 NEBP20929 6669 aa5.98□□□□□ -1.45
HOXC9-202ENST00000504557 MT1XP80297 61 aa5.98□□□□□ -1.45
HOXC9-202ENST00000504557 MUC12Q9UKN1 5478 aa5.95□□□□□ -1.46
HOXC9-202ENST00000504557 LCE1DQ5T752 114 aa5.93□□□□□ -1.46
HOXC9-202ENST00000504557 SERP2Q8N6R1 65 aa5.92□□□□□ -1.46
HOXC9-202ENST00000504557 KRTAP4-7Q9BYR0 210 aa5.91□□□□□ -1.46
HOXC9-202ENST00000504557 KRTAP5-9P26371 169 aa5.9□□□□□ -1.46
HOXC9-202ENST00000504557 KMT2DO14686 5537 aa5.89□□□□□ -1.47
HOXC9-202ENST00000504557 SPANXA2-OT1Q8N9U9 137 aa5.86□□□□□ -1.47
HOXC9-202ENST00000504557 SPRR2FQ96RM1 72 aa5.84□□□□□ -1.47
HOXC9-202ENST00000504557 KRTAP8-1Q8IUC2 63 aa5.82□□□□□ -1.48
HOXC9-202ENST00000504557 MDN1Q9NU22 5596 aa5.77□□□□□ -1.49
HOXC9-202ENST00000504557 KRTAP12-2P59991 146 aa5.77□□□□□ -1.49
HOXC9-202ENST00000504557 KRTAP20-1Q3LI63 56 aa5.77□□□□□ -1.49
HOXC9-202ENST00000504557 COA5Q86WW8 74 aa5.77□□□□□ -1.49
HOXC9-202ENST00000504557 KRTAP4-9Q9BYQ8 210 aa5.76□□□□□ -1.49
HOXC9-202ENST00000504557 SPRR2EP22531 72 aa5.75□□□□□ -1.49
HOXC9-202ENST00000504557 SPRR2BP35325 72 aa5.75□□□□□ -1.49
HOXC9-202ENST00000504557 SPRR2AP35326 72 aa5.75□□□□□ -1.49
HOXC9-202ENST00000504557 COX7CP15954 63 aa5.74□□□□□ -1.49
HOXC9-202ENST00000504557 KRTAP10-7P60409 375 aaPredicted RBP5.74□□□□□ -1.49
HOXC9-202ENST00000504557 KRTAP13-4Q3LI77 160 aa5.74□□□□□ -1.49
HOXC9-202ENST00000504557 CYSTM1Q9H1C7 97 aa5.69□□□□□ -1.5
HOXC9-202ENST00000504557 SEC61GP60059 68 aa5.67□□□□□ -1.5
HOXC9-202ENST00000504557 SERP1Q9Y6X1 66 aa5.67□□□□□ -1.5
HOXC9-202ENST00000504557 KRTAP19-4Q3LI73 84 aa5.66□□□□□ -1.5
HOXC9-202ENST00000504557 LCE4AQ5TA78 99 aa5.66□□□□□ -1.5
HOXC9-202ENST00000504557 CAMK2N1Q7Z7J9 78 aa5.66□□□□□ -1.5
HOXC9-202ENST00000504557 A0A0D9SG42 100 aa5.65□□□□□ -1.5
HOXC9-202ENST00000504557 KRTAP10-12P60413 245 aa5.65□□□□□ -1.5
HOXC9-202ENST00000504557 H7BZZ5 65 aa5.64□□□□□ -1.51
HOXC9-202ENST00000504557 KRTAP4-2Q9BYR5 136 aa5.64□□□□□ -1.51
HOXC9-202ENST00000504557 LCE1AQ5T7P2 110 aa5.61□□□□□ -1.51
HOXC9-202ENST00000504557 SPATA8Q6RVD6 105 aa5.61□□□□□ -1.51
HOXC9-202ENST00000504557 KRTAP2-3P0C7H8 128 aa5.6□□□□□ -1.51
HOXC9-202ENST00000504557 KRTAP2-4Q9BYR9 128 aa5.6□□□□□ -1.51
HOXC9-202ENST00000504557 ANAPC13Q9BS18 74 aa5.59□□□□□ -1.51
HOXC9-202ENST00000504557 A0A1B0GU33 70 aa5.56□□□□□ -1.52
HOXC9-202ENST00000504557 SPRR2DP22532 72 aa5.55□□□□□ -1.52
HOXC9-202ENST00000504557 SPINT4Q6UDR6 99 aa5.55□□□□□ -1.52
HOXC9-202ENST00000504557 KRTAP4-11Q9BYQ6 195 aa5.55□□□□□ -1.52
HOXC9-202ENST00000504557 A0A1B0GU69 56 aa5.49□□□□□ -1.53
HOXC9-202ENST00000504557 CCDC179H3BU77 68 aa5.49□□□□□ -1.53
HOXC9-202ENST00000504557 LCE5AQ5TCM9 118 aa5.45□□□□□ -1.54
HOXC9-202ENST00000504557 KRTAP12-1P59990 96 aa5.44□□□□□ -1.54
HOXC9-202ENST00000504557 KRTAP2-2Q9BYT5 123 aa5.42□□□□□ -1.54
HOXC9-202ENST00000504557 KRTAP2-1Q9BYU5 128 aa5.42□□□□□ -1.54
HOXC9-202ENST00000504557 A8MU10 97 aa5.41□□□□□ -1.54
HOXC9-202ENST00000504557 H3BS24 57 aa5.41□□□□□ -1.54
HOXC9-202ENST00000504557 SMIM26A0A096LP01 95 aa5.38□□□□□ -1.55
HOXC9-202ENST00000504557 ATP5EP56381 51 aaPredicted RBP5.34□□□□□ -1.55
HOXC9-202ENST00000504557 KRTAP19-7Q3SYF9 63 aa5.33□□□□□ -1.56
HOXC9-202ENST00000504557 PRR15LQ9BU68 103 aa5.31□□□□□ -1.56
HOXC9-202ENST00000504557 MT1EP04732 61 aa5.29□□□□□ -1.56
HOXC9-202ENST00000504557 KRTAP19-5Q3LI72 72 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms