RNA–Protein interactions for RNA: ENST00000495497.1

HDAC4-212, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 849 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-212ENST00000495497 USH2AO75445 5202 aa9.08□□□□□ -0.96
HDAC4-212ENST00000495497 KRTAP9-6A0A140TA67 174 aa9.07□□□□□ -0.96
HDAC4-212ENST00000495497 A8MUN3 132 aa9.07□□□□□ -0.96
HDAC4-212ENST00000495497 CRCT1Q9UGL9 99 aa9.05□□□□□ -0.96
HDAC4-212ENST00000495497 LCE2BO14633 110 aa9.04□□□□□ -0.96
HDAC4-212ENST00000495497 SNURFQ9Y675 71 aa9□□□□□ -0.97
HDAC4-212ENST00000495497 NDUFC1O43677 76 aa8.98□□□□□ -0.97
HDAC4-212ENST00000495497 SERP2Q8N6R1 65 aa8.98□□□□□ -0.97
HDAC4-212ENST00000495497 DMAC1Q96GE9 116 aa8.97□□□□□ -0.97
HDAC4-212ENST00000495497 C20orf197Q8N268 126 aa8.94□□□□□ -0.98
HDAC4-212ENST00000495497 SSPOA2VEC9 5147 aa8.92□□□□□ -0.98
HDAC4-212ENST00000495497 KRTAP19-1Q8IUB9 90 aa8.82□□□□□ -1
HDAC4-212ENST00000495497 ACYP2P14621 99 aa8.81□□□□□ -1
HDAC4-212ENST00000495497 COX7CP15954 63 aa8.81□□□□□ -1
HDAC4-212ENST00000495497 H0YAA0 97 aa8.78□□□□□ -1
HDAC4-212ENST00000495497 ADM2Q7Z4H4 148 aa8.77□□□□□ -1.01
HDAC4-212ENST00000495497 SPANXA2-OT1Q8N9U9 137 aa8.75□□□□□ -1.01
HDAC4-212ENST00000495497 SPRR2GQ9BYE4 73 aa8.72□□□□□ -1.01
HDAC4-212ENST00000495497 CYSTM1Q9H1C7 97 aa8.69□□□□□ -1.02
HDAC4-212ENST00000495497 ANAPC13Q9BS18 74 aa8.68□□□□□ -1.02
HDAC4-212ENST00000495497 CHKB-CPT1BH3BT56 60 aa8.67□□□□□ -1.02
HDAC4-212ENST00000495497 CRIPTQ9P021 101 aa8.67□□□□□ -1.02
HDAC4-212ENST00000495497 FCGBPQ9Y6R7 5405 aaPredicted RBP8.63□□□□□ -1.03
HDAC4-212ENST00000495497 P0C880 135 aa8.63□□□□□ -1.03
HDAC4-212ENST00000495497 KRTAP19-8Q3LI54 63 aa8.62□□□□□ -1.03
HDAC4-212ENST00000495497 KRTAP19-6Q3LI70 58 aa8.62□□□□□ -1.03
HDAC4-212ENST00000495497 MT1BP07438 61 aa8.61□□□□□ -1.03
HDAC4-212ENST00000495497 SPTSSBQ8NFR3 76 aa8.61□□□□□ -1.03
HDAC4-212ENST00000495497 KRTAP3-2Q9BYR7 98 aa8.61□□□□□ -1.03
HDAC4-212ENST00000495497 H7BZZ5 65 aa8.6□□□□□ -1.03
HDAC4-212ENST00000495497 Q5VV11 94 aa8.6□□□□□ -1.03
HDAC4-212ENST00000495497 CCDC179H3BU77 68 aa8.55□□□□□ -1.04
HDAC4-212ENST00000495497 COA5Q86WW8 74 aa8.54□□□□□ -1.04
HDAC4-212ENST00000495497 R4GN34 69 aa8.49□□□□□ -1.05
HDAC4-212ENST00000495497 M0QZ58 72 aa8.46□□□□□ -1.06
HDAC4-212ENST00000495497 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.41□□□□□ -1.06
HDAC4-212ENST00000495497 A6NN06 94 aa8.36□□□□□ -1.07
HDAC4-212ENST00000495497 LINC01554Q52M75 96 aa8.34□□□□□ -1.07
HDAC4-212ENST00000495497 KRTAP10-5P60370 271 aa8.32□□□□□ -1.08
HDAC4-212ENST00000495497 PLAC4Q8WY50 150 aa8.28□□□□□ -1.08
HDAC4-212ENST00000495497 MACF1Q9UPN3 7388 aaKnown RBP8.27□□□□□ -1.09
HDAC4-212ENST00000495497 ATP5EP56381 51 aaPredicted RBP8.23□□□□□ -1.09
HDAC4-212ENST00000495497 KRTAP13-4Q3LI77 160 aa8.22□□□□□ -1.09
HDAC4-212ENST00000495497 SEC61GP60059 68 aa8.21□□□□□ -1.1
HDAC4-212ENST00000495497 KRTAP9-7A8MTY7 169 aa8.2□□□□□ -1.1
HDAC4-212ENST00000495497 SERP1Q9Y6X1 66 aa8.2□□□□□ -1.1
HDAC4-212ENST00000495497 TMEM258P61165 79 aa8.17□□□□□ -1.1
HDAC4-212ENST00000495497 MT1XP80297 61 aa8.16□□□□□ -1.1
HDAC4-212ENST00000495497 SYNE2Q8WXH0 6885 aaKnown RBP8.14□□□□□ -1.11
HDAC4-212ENST00000495497 PRO2289Q9P1D8 64 aa8.09□□□□□ -1.11
HDAC4-212ENST00000495497 A0A1B0GU33 70 aa8.07□□□□□ -1.12
HDAC4-212ENST00000495497 A0A1B0GU69 56 aa8.07□□□□□ -1.12
HDAC4-212ENST00000495497 SPATA8Q6RVD6 105 aa8.06□□□□□ -1.12
HDAC4-212ENST00000495497 A0A0D9SG42 100 aa8□□□□□ -1.13
HDAC4-212ENST00000495497 KRTAP6-3Q3LI67 103 aa7.96□□□□□ -1.14
HDAC4-212ENST00000495497 LINC01558Q9Y6Z2 57 aa7.94□□□□□ -1.14
HDAC4-212ENST00000495497 PRR15LQ9BU68 103 aa7.9□□□□□ -1.14
HDAC4-212ENST00000495497 KMT2DO14686 5537 aa7.89□□□□□ -1.15
HDAC4-212ENST00000495497 SPINT4Q6UDR6 99 aa7.86□□□□□ -1.15
HDAC4-212ENST00000495497 CAMK2N1Q7Z7J9 78 aa7.86□□□□□ -1.15
HDAC4-212ENST00000495497 A8MU10 97 aa7.84□□□□□ -1.15
HDAC4-212ENST00000495497 PCP4P48539 62 aa7.84□□□□□ -1.15
HDAC4-212ENST00000495497 KRTAP12-2P59991 146 aa7.84□□□□□ -1.15
HDAC4-212ENST00000495497 KRTAP12-1P59990 96 aa7.82□□□□□ -1.16
HDAC4-212ENST00000495497 KRTAP10-7P60409 375 aaPredicted RBP7.82□□□□□ -1.16
HDAC4-212ENST00000495497 SMIM26A0A096LP01 95 aa7.81□□□□□ -1.16
HDAC4-212ENST00000495497 MUC12Q9UKN1 5478 aa7.75□□□□□ -1.17
HDAC4-212ENST00000495497 KRTAP4-8A0A0G2JLE6 195 aa7.73□□□□□ -1.17
HDAC4-212ENST00000495497 KRTAP5-9P26371 169 aa7.73□□□□□ -1.17
HDAC4-212ENST00000495497 KRTAP10-12P60413 245 aa7.73□□□□□ -1.17
HDAC4-212ENST00000495497 KRTAP4-8Q9BYQ9 185 aa7.73□□□□□ -1.17
HDAC4-212ENST00000495497 KRTAP8-1Q8IUC2 63 aa7.69□□□□□ -1.18
HDAC4-212ENST00000495497 UQCR11O14957 56 aa7.66□□□□□ -1.18
HDAC4-212ENST00000495497 Q1T7F1 81 aa7.64□□□□□ -1.19
HDAC4-212ENST00000495497 PSPHP1O15172 72 aa7.63□□□□□ -1.19
HDAC4-212ENST00000495497 V9GYY9 64 aa7.63□□□□□ -1.19
HDAC4-212ENST00000495497 SPRR2FQ96RM1 72 aa7.62□□□□□ -1.19
HDAC4-212ENST00000495497 NEBP20929 6669 aa7.61□□□□□ -1.19
HDAC4-212ENST00000495497 MDN1Q9NU22 5596 aa7.59□□□□□ -1.2
HDAC4-212ENST00000495497 MIR22HGQ0VDD5 57 aa7.54□□□□□ -1.2
HDAC4-212ENST00000495497 RPS28P62857 69 aaKnown RBP7.52□□□□□ -1.21
HDAC4-212ENST00000495497 C10orf95Q9H7T3 257 aa7.47□□□□□ -1.21
HDAC4-212ENST00000495497 SPRR2EP22531 72 aa7.42□□□□□ -1.22
HDAC4-212ENST00000495497 SPRR2BP35325 72 aa7.42□□□□□ -1.22
HDAC4-212ENST00000495497 SPRR2AP35326 72 aa7.42□□□□□ -1.22
HDAC4-212ENST00000495497 A6NED7 52 aa7.36□□□□□ -1.23
HDAC4-212ENST00000495497 LCE1AQ5T7P2 110 aa7.36□□□□□ -1.23
HDAC4-212ENST00000495497 TNP1P09430 55 aa7.32□□□□□ -1.24
HDAC4-212ENST00000495497 KRTAP19-7Q3SYF9 63 aa7.29□□□□□ -1.24
HDAC4-212ENST00000495497 K7ERS5 55 aa7.28□□□□□ -1.24
HDAC4-212ENST00000495497 KRTAP19-5Q3LI72 72 aa7.22□□□□□ -1.25
HDAC4-212ENST00000495497 LCE3AQ5TA76 89 aa7.22□□□□□ -1.25
HDAC4-212ENST00000495497 MT1EP04732 61 aa7.21□□□□□ -1.26
HDAC4-212ENST00000495497 KRTAP20-1Q3LI63 56 aa7.21□□□□□ -1.26
HDAC4-212ENST00000495497 SPRR2DP22532 72 aa7.17□□□□□ -1.26
HDAC4-212ENST00000495497 KRTAP2-3P0C7H8 128 aa7.11□□□□□ -1.27
HDAC4-212ENST00000495497 KRTAP2-4Q9BYR9 128 aa7.11□□□□□ -1.27
HDAC4-212ENST00000495497 CDC42SE1Q9NRR8 79 aa7.08□□□□□ -1.28
HDAC4-212ENST00000495497 KRTAP25-1Q3LHN0 102 aa7.06□□□□□ -1.28
HDAC4-212ENST00000495497 KRTAP19-3Q7Z4W3 81 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms