RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 PRR15LQ9BU68 103 aa5.32□□□□□ -1.56
HDAC3-214ENST00000495485 LINC01558Q9Y6Z2 57 aa5.32□□□□□ -1.56
HDAC3-214ENST00000495485 SEC61GP60059 68 aa5.28□□□□□ -1.56
HDAC3-214ENST00000495485 FAT4Q6V0I7 4981 aa5.25□□□□□ -1.57
HDAC3-214ENST00000495485 PSPHP1O15172 72 aa5.25□□□□□ -1.57
HDAC3-214ENST00000495485 FLGP20930 4061 aaPredicted RBP5.24□□□□□ -1.57
HDAC3-214ENST00000495485 A0A1B0GU69 56 aa5.24□□□□□ -1.57
HDAC3-214ENST00000495485 KRTAP3-1Q9BYR8 98 aa5.24□□□□□ -1.57
HDAC3-214ENST00000495485 H1FX-AS1Q4G0G2 97 aa5.23□□□□□ -1.57
HDAC3-214ENST00000495485 S4R3F8 94 aa5.22□□□□□ -1.57
HDAC3-214ENST00000495485 Q5VV11 94 aa5.19□□□□□ -1.58
HDAC3-214ENST00000495485 KRTAP4-1Q9BYQ7 146 aa5.17□□□□□ -1.58
HDAC3-214ENST00000495485 A6NED7 52 aa5.16□□□□□ -1.58
HDAC3-214ENST00000495485 BRK1Q8WUW1 75 aa5.14□□□□□ -1.59
HDAC3-214ENST00000495485 LCA10Q71F78 164 aa5.13□□□□□ -1.59
HDAC3-214ENST00000495485 UQCR11O14957 56 aa5.12□□□□□ -1.59
HDAC3-214ENST00000495485 CSAG1Q6PB30 78 aa5.12□□□□□ -1.59
HDAC3-214ENST00000495485 LCE2AQ5TA79 106 aaPredicted RBP5.09□□□□□ -1.59
HDAC3-214ENST00000495485 PRO0628Q9UI54 55 aa5.09□□□□□ -1.59
HDAC3-214ENST00000495485 KRTAP19-2Q3LHN2 52 aa5.07□□□□□ -1.6
HDAC3-214ENST00000495485 CDC42SE1Q9NRR8 79 aa5.07□□□□□ -1.6
HDAC3-214ENST00000495485 KRTAP3-3Q9BYR6 98 aa5.06□□□□□ -1.6
HDAC3-214ENST00000495485 LCE2CQ5TA81 110 aa5.05□□□□□ -1.6
HDAC3-214ENST00000495485 A0A1B0GU33 70 aa5.04□□□□□ -1.6
HDAC3-214ENST00000495485 MIR22HGQ0VDD5 57 aa5.03□□□□□ -1.6
HDAC3-214ENST00000495485 H0YAA0 97 aa5.01□□□□□ -1.61
HDAC3-214ENST00000495485 SPATA8Q6RVD6 105 aa5.01□□□□□ -1.61
HDAC3-214ENST00000495485 MT1HP80294 61 aa5□□□□□ -1.61
HDAC3-214ENST00000495485 M0R2T5 61 aa4.97□□□□□ -1.61
HDAC3-214ENST00000495485 ADM2Q7Z4H4 148 aa4.95□□□□□ -1.62
HDAC3-214ENST00000495485 K7ERS5 55 aa4.92□□□□□ -1.62
HDAC3-214ENST00000495485 KRTAP10-6P60371 365 aaPredicted RBP4.92□□□□□ -1.62
HDAC3-214ENST00000495485 M0QZ58 72 aa4.91□□□□□ -1.62
HDAC3-214ENST00000495485 KRTAP3-2Q9BYR7 98 aa4.9□□□□□ -1.63
HDAC3-214ENST00000495485 PMAIP1Q13794 54 aa4.89□□□□□ -1.63
HDAC3-214ENST00000495485 LORP23490 312 aaPredicted RBP4.88□□□□□ -1.63
HDAC3-214ENST00000495485 P0C880 135 aa4.87□□□□□ -1.63
HDAC3-214ENST00000495485 A8MU10 97 aa4.85□□□□□ -1.63
HDAC3-214ENST00000495485 R4GN34 69 aa4.84□□□□□ -1.63
HDAC3-214ENST00000495485 LCE2DQ5TA82 110 aaPredicted RBP4.81□□□□□ -1.64
HDAC3-214ENST00000495485 SVIPQ8NHG7 77 aa4.81□□□□□ -1.64
HDAC3-214ENST00000495485 CRIPTQ9P021 101 aa4.81□□□□□ -1.64
HDAC3-214ENST00000495485 A6NN06 94 aa4.77□□□□□ -1.65
HDAC3-214ENST00000495485 A0A0D9SG42 100 aa4.76□□□□□ -1.65
HDAC3-214ENST00000495485 KRTAP9-8Q9BYQ0 159 aa4.76□□□□□ -1.65
HDAC3-214ENST00000495485 KRTAP9-2Q9BYQ4 174 aa4.76□□□□□ -1.65
HDAC3-214ENST00000495485 KRTAP13-4Q3LI77 160 aa4.75□□□□□ -1.65
HDAC3-214ENST00000495485 MT2AP02795 61 aa4.7□□□□□ -1.66
HDAC3-214ENST00000495485 SPINT4Q6UDR6 99 aa4.7□□□□□ -1.66
HDAC3-214ENST00000495485 KTN1-AS1Q86SY8 53 aa4.7□□□□□ -1.66
HDAC3-214ENST00000495485 KRTAP10-10P60014 251 aa4.69□□□□□ -1.66
HDAC3-214ENST00000495485 LINC01554Q52M75 96 aa4.69□□□□□ -1.66
HDAC3-214ENST00000495485 KRTAP9-6A0A140TA67 174 aa4.68□□□□□ -1.66
HDAC3-214ENST00000495485 MT1FP04733 61 aa4.65□□□□□ -1.67
HDAC3-214ENST00000495485 KRTAP12-1P59990 96 aa4.65□□□□□ -1.67
HDAC3-214ENST00000495485 FSIP2Q5CZC0 6907 aa4.61□□□□□ -1.67
HDAC3-214ENST00000495485 KRTAP12-2P59991 146 aa4.61□□□□□ -1.67
HDAC3-214ENST00000495485 ROMO1P60602 79 aa4.61□□□□□ -1.67
HDAC3-214ENST00000495485 KRTAP9-3Q9BYQ3 159 aa4.61□□□□□ -1.67
HDAC3-214ENST00000495485 USH2AO75445 5202 aa4.58□□□□□ -1.68
HDAC3-214ENST00000495485 CAMK2N1Q7Z7J9 78 aa4.56□□□□□ -1.68
HDAC3-214ENST00000495485 SPRR2GQ9BYE4 73 aa4.56□□□□□ -1.68
HDAC3-214ENST00000495485 PLAC4Q8WY50 150 aa4.55□□□□□ -1.68
HDAC3-214ENST00000495485 CRCT1Q9UGL9 99 aa4.55□□□□□ -1.68
HDAC3-214ENST00000495485 LCE2BO14633 110 aa4.5□□□□□ -1.69
HDAC3-214ENST00000495485 SSPOA2VEC9 5147 aa4.48□□□□□ -1.69
HDAC3-214ENST00000495485 KRTAP19-1Q8IUB9 90 aa4.47□□□□□ -1.69
HDAC3-214ENST00000495485 PRAC1Q96KF2 57 aa4.45□□□□□ -1.7
HDAC3-214ENST00000495485 KRTAP19-8Q3LI54 63 aa4.43□□□□□ -1.7
HDAC3-214ENST00000495485 KRTAP25-1Q3LHN0 102 aa4.42□□□□□ -1.7
HDAC3-214ENST00000495485 KRTAP19-6Q3LI70 58 aa4.4□□□□□ -1.71
HDAC3-214ENST00000495485 FCGBPQ9Y6R7 5405 aaPredicted RBP4.38□□□□□ -1.71
HDAC3-214ENST00000495485 C10orf95Q9H7T3 257 aa4.37□□□□□ -1.71
HDAC3-214ENST00000495485 TNP1P09430 55 aa4.36□□□□□ -1.71
HDAC3-214ENST00000495485 MT1BP07438 61 aa4.33□□□□□ -1.72
HDAC3-214ENST00000495485 PP632Q6XCG6 107 aa4.33□□□□□ -1.72
HDAC3-214ENST00000495485 PRO2289Q9P1D8 64 aa4.32□□□□□ -1.72
HDAC3-214ENST00000495485 KRTAP23-1A1A580 65 aa4.28□□□□□ -1.72
HDAC3-214ENST00000495485 MACF1Q9UPN3 7388 aaKnown RBP4.25□□□□□ -1.73
HDAC3-214ENST00000495485 KRTAP10-5P60370 271 aa4.24□□□□□ -1.73
HDAC3-214ENST00000495485 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.2□□□□□ -1.74
HDAC3-214ENST00000495485 MT1XP80297 61 aa4.18□□□□□ -1.74
HDAC3-214ENST00000495485 KRTAP9-7A8MTY7 169 aa4.13□□□□□ -1.75
HDAC3-214ENST00000495485 SYNE2Q8WXH0 6885 aaKnown RBP4.12□□□□□ -1.75
HDAC3-214ENST00000495485 KRTAP10-12P60413 245 aa4.07□□□□□ -1.76
HDAC3-214ENST00000495485 KRTAP6-3Q3LI67 103 aa4.06□□□□□ -1.76
HDAC3-214ENST00000495485 LCE3AQ5TA76 89 aa4.03□□□□□ -1.76
HDAC3-214ENST00000495485 KRTAP10-7P60409 375 aaPredicted RBP4□□□□□ -1.77
HDAC3-214ENST00000495485 KRTAP8-1Q8IUC2 63 aa3.99□□□□□ -1.77
HDAC3-214ENST00000495485 KRTAP5-9P26371 169 aa3.97□□□□□ -1.77
HDAC3-214ENST00000495485 KMT2DO14686 5537 aa3.96□□□□□ -1.78
HDAC3-214ENST00000495485 MUC12Q9UKN1 5478 aa3.94□□□□□ -1.78
HDAC3-214ENST00000495485 KRTAP12-3P60328 96 aa3.91□□□□□ -1.78
HDAC3-214ENST00000495485 MDN1Q9NU22 5596 aa3.9□□□□□ -1.79
HDAC3-214ENST00000495485 NEBP20929 6669 aa3.88□□□□□ -1.79
HDAC3-214ENST00000495485 KRTAP15-1Q3LI76 137 aa3.88□□□□□ -1.79
HDAC3-214ENST00000495485 KRTAP19-4Q3LI73 84 aa3.84□□□□□ -1.79
HDAC3-214ENST00000495485 SPRR2FQ96RM1 72 aa3.84□□□□□ -1.79
HDAC3-214ENST00000495485 KRTAP19-5Q3LI72 72 aa3.82□□□□□ -1.8
HDAC3-214ENST00000495485 LUZP6Q538Z0 58 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 265 ms