RNA–Protein interactions for RNA: ENST00000494546.1

CBX4-203, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-203ENST00000494546 KLKP1Q107X0 134 aa14.93□□□□□ -0.02
CBX4-203ENST00000494546 Q5VV11 94 aa14.9□□□□□ -0.02
CBX4-203ENST00000494546 MT1BP07438 61 aa14.87□□□□□ -0.03
CBX4-203ENST00000494546 KRTAP19-8Q3LI54 63 aa14.84□□□□□ -0.03
CBX4-203ENST00000494546 LINC00208Q96KT6 92 aa14.84□□□□□ -0.03
CBX4-203ENST00000494546 NDUFC1O43677 76 aa14.79□□□□□ -0.04
CBX4-203ENST00000494546 SYNE2Q8WXH0 6885 aaKnown RBP14.78□□□□□ -0.04
CBX4-203ENST00000494546 OCR1Q9BZK8 76 aa14.77□□□□□ -0.05
CBX4-203ENST00000494546 MP68P56378 58 aa14.75□□□□□ -0.05
CBX4-203ENST00000494546 IMUPQ9GZP8 106 aa14.75□□□□□ -0.05
CBX4-203ENST00000494546 A6NN06 94 aa14.74□□□□□ -0.05
CBX4-203ENST00000494546 A8MUN3 132 aa14.73□□□□□ -0.05
CBX4-203ENST00000494546 CRIPTQ9P021 101 aa14.7□□□□□ -0.06
CBX4-203ENST00000494546 J3QR89 54 aa14.68□□□□□ -0.06
CBX4-203ENST00000494546 H0YAA0 97 aa14.61□□□□□ -0.07
CBX4-203ENST00000494546 KRTAP6-3Q3LI67 103 aa14.61□□□□□ -0.07
CBX4-203ENST00000494546 KRTAP10-5P60370 271 aa14.53□□□□□ -0.08
CBX4-203ENST00000494546 ADM2Q7Z4H4 148 aa14.52□□□□□ -0.09
CBX4-203ENST00000494546 SCGB1A1P11684 91 aa14.51□□□□□ -0.09
CBX4-203ENST00000494546 H3BPC8 53 aa14.49□□□□□ -0.09
CBX4-203ENST00000494546 DMAC1Q96GE9 116 aa14.33□□□□□ -0.12
CBX4-203ENST00000494546 MT-ATP8P03928 68 aa14.19□□□□□ -0.14
CBX4-203ENST00000494546 P0C880 135 aa14.18□□□□□ -0.14
CBX4-203ENST00000494546 C20orf197Q8N268 126 aa14.15□□□□□ -0.14
CBX4-203ENST00000494546 R4GN34 69 aa14.14□□□□□ -0.15
CBX4-203ENST00000494546 K7ERU9 68 aa14.1□□□□□ -0.15
CBX4-203ENST00000494546 PLAC4Q8WY50 150 aa14.06□□□□□ -0.16
CBX4-203ENST00000494546 TRAV7A0A075B6U4 112 aa14.05□□□□□ -0.16
CBX4-203ENST00000494546 M0QZ58 72 aa14.05□□□□□ -0.16
CBX4-203ENST00000494546 SMIM20Q8N5G0 67 aa14.05□□□□□ -0.16
CBX4-203ENST00000494546 KRTAP3-2Q9BYR7 98 aa14.02□□□□□ -0.17
CBX4-203ENST00000494546 PRO2289Q9P1D8 64 aa14.01□□□□□ -0.17
CBX4-203ENST00000494546 ACYP2P14621 99 aa14□□□□□ -0.17
CBX4-203ENST00000494546 MT1XP80297 61 aa13.96□□□□□ -0.17
CBX4-203ENST00000494546 KRTAP5-9P26371 169 aa13.93□□□□□ -0.18
CBX4-203ENST00000494546 NEBP20929 6669 aa13.89□□□□□ -0.19
CBX4-203ENST00000494546 MUC12Q9UKN1 5478 aa13.88□□□□□ -0.19
CBX4-203ENST00000494546 LINC01554Q52M75 96 aa13.87□□□□□ -0.19
CBX4-203ENST00000494546 SPTSSBQ8NFR3 76 aa13.84□□□□□ -0.19
CBX4-203ENST00000494546 SNURFQ9Y675 71 aa13.82□□□□□ -0.2
CBX4-203ENST00000494546 CHKB-CPT1BH3BT56 60 aa13.78□□□□□ -0.2
CBX4-203ENST00000494546 KMT2DO14686 5537 aa13.68□□□□□ -0.22
CBX4-203ENST00000494546 KRTAP12-2P59991 146 aa13.59□□□□□ -0.23
CBX4-203ENST00000494546 SPRR2FQ96RM1 72 aa13.59□□□□□ -0.23
CBX4-203ENST00000494546 SERP2Q8N6R1 65 aa13.58□□□□□ -0.24
CBX4-203ENST00000494546 SPANXA2-OT1Q8N9U9 137 aa13.58□□□□□ -0.24
CBX4-203ENST00000494546 KRTAP20-1Q3LI63 56 aa13.56□□□□□ -0.24
CBX4-203ENST00000494546 KRTAP8-1Q8IUC2 63 aa13.55□□□□□ -0.24
CBX4-203ENST00000494546 MDN1Q9NU22 5596 aa13.5□□□□□ -0.25
CBX4-203ENST00000494546 SPRR2EP22531 72 aa13.39□□□□□ -0.27
CBX4-203ENST00000494546 SPRR2BP35325 72 aa13.39□□□□□ -0.27
CBX4-203ENST00000494546 SPRR2AP35326 72 aa13.39□□□□□ -0.27
CBX4-203ENST00000494546 KRTAP4-8A0A0G2JLE6 195 aa13.37□□□□□ -0.27
CBX4-203ENST00000494546 KRTAP4-8Q9BYQ9 185 aa13.37□□□□□ -0.27
CBX4-203ENST00000494546 KRTAP10-7P60409 375 aaPredicted RBP13.34□□□□□ -0.27
CBX4-203ENST00000494546 KRTAP10-12P60413 245 aa13.24□□□□□ -0.29
CBX4-203ENST00000494546 KRTAP13-4Q3LI77 160 aa13.24□□□□□ -0.29
CBX4-203ENST00000494546 COA5Q86WW8 74 aa13.24□□□□□ -0.29
CBX4-203ENST00000494546 KRTAP2-3P0C7H8 128 aa13.19□□□□□ -0.3
CBX4-203ENST00000494546 KRTAP2-4Q9BYR9 128 aa13.19□□□□□ -0.3
CBX4-203ENST00000494546 LCE1AQ5T7P2 110 aa13.18□□□□□ -0.3
CBX4-203ENST00000494546 COX7CP15954 63 aa13.15□□□□□ -0.3
CBX4-203ENST00000494546 SEC61GP60059 68 aa13.04□□□□□ -0.32
CBX4-203ENST00000494546 CAMK2N1Q7Z7J9 78 aa13.03□□□□□ -0.32
CBX4-203ENST00000494546 SERP1Q9Y6X1 66 aa13.01□□□□□ -0.33
CBX4-203ENST00000494546 CYSTM1Q9H1C7 97 aa12.97□□□□□ -0.33
CBX4-203ENST00000494546 H7BZZ5 65 aa12.95□□□□□ -0.34
CBX4-203ENST00000494546 SPRR2DP22532 72 aa12.94□□□□□ -0.34
CBX4-203ENST00000494546 A0A0D9SG42 100 aa12.89□□□□□ -0.35
CBX4-203ENST00000494546 SPATA8Q6RVD6 105 aa12.84□□□□□ -0.35
CBX4-203ENST00000494546 A0A1B0GU33 70 aa12.8□□□□□ -0.36
CBX4-203ENST00000494546 KRTAP2-2Q9BYT5 123 aa12.77□□□□□ -0.37
CBX4-203ENST00000494546 KRTAP2-1Q9BYU5 128 aa12.77□□□□□ -0.37
CBX4-203ENST00000494546 SPINT4Q6UDR6 99 aa12.7□□□□□ -0.38
CBX4-203ENST00000494546 ANAPC13Q9BS18 74 aa12.69□□□□□ -0.38
CBX4-203ENST00000494546 A0A1B0GU69 56 aa12.58□□□□□ -0.4
CBX4-203ENST00000494546 LCE3BQ5TA77 95 aa12.58□□□□□ -0.4
CBX4-203ENST00000494546 KRTAP12-1P59990 96 aa12.57□□□□□ -0.4
CBX4-203ENST00000494546 KRTAP19-7Q3SYF9 63 aa12.46□□□□□ -0.41
CBX4-203ENST00000494546 CCDC179H3BU77 68 aa12.45□□□□□ -0.42
CBX4-203ENST00000494546 SMIM26A0A096LP01 95 aa12.43□□□□□ -0.42
CBX4-203ENST00000494546 MT1EP04732 61 aa12.37□□□□□ -0.43
CBX4-203ENST00000494546 A8MU10 97 aa12.36□□□□□ -0.43
CBX4-203ENST00000494546 ATP5EP56381 51 aaPredicted RBP12.27□□□□□ -0.45
CBX4-203ENST00000494546 LCE5AQ5TCM9 118 aa12.27□□□□□ -0.45
CBX4-203ENST00000494546 KRTAP19-3Q7Z4W3 81 aa12.26□□□□□ -0.45
CBX4-203ENST00000494546 KRTAP19-5Q3LI72 72 aa12.19□□□□□ -0.46
CBX4-203ENST00000494546 PRR15LQ9BU68 103 aa12.19□□□□□ -0.46
CBX4-203ENST00000494546 LINC01558Q9Y6Z2 57 aa12.05□□□□□ -0.48
CBX4-203ENST00000494546 C10orf95Q9H7T3 257 aa12.03□□□□□ -0.48
CBX4-203ENST00000494546 TNP1P09430 55 aa11.99□□□□□ -0.49
CBX4-203ENST00000494546 MT1GP13640 62 aa11.97□□□□□ -0.49
CBX4-203ENST00000494546 TMEM258P61165 79 aa11.95□□□□□ -0.5
CBX4-203ENST00000494546 LCE3AQ5TA76 89 aa11.93□□□□□ -0.5
CBX4-203ENST00000494546 DSTQ03001 7570 aaKnown RBP11.92□□□□□ -0.5
CBX4-203ENST00000494546 PP632Q6XCG6 107 aa11.88□□□□□ -0.51
CBX4-203ENST00000494546 MT1LQ93083 61 aa11.83□□□□□ -0.52
CBX4-203ENST00000494546 UQCR11O14957 56 aa11.78□□□□□ -0.52
CBX4-203ENST00000494546 MT1MQ8N339 61 aa11.78□□□□□ -0.52
CBX4-203ENST00000494546 KRTAP4-9Q9BYQ8 210 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms