RNA–Protein interactions for RNA: ENST00000493886.5

VCP-207, Transcript of valosin containing protein, humanhuman

TSL 2

Gene VCP, Length 2,942 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-207ENST00000493886 KRTAP10-8P60410 259 aa7.48□□□□□ -1.21
VCP-207ENST00000493886 LUZP6Q538Z0 58 aa7.47□□□□□ -1.21
VCP-207ENST00000493886 SPINT4Q6UDR6 99 aa7.46□□□□□ -1.22
VCP-207ENST00000493886 LRP1Q07954 4544 aaKnown RBP7.46□□□□□ -1.22
VCP-207ENST00000493886 RYR1P21817 5038 aa7.45□□□□□ -1.22
VCP-207ENST00000493886 TNXBP22105 4242 aa7.44□□□□□ -1.22
VCP-207ENST00000493886 KRTAP17-1Q9BYP8 105 aa7.44□□□□□ -1.22
VCP-207ENST00000493886 FAT3Q8TDW7 4589 aa7.4□□□□□ -1.23
VCP-207ENST00000493886 KIAA1109Q2LD37 5005 aa7.35□□□□□ -1.23
VCP-207ENST00000493886 DMBT1Q9UGM3 2413 aaPredicted RBP7.35□□□□□ -1.23
VCP-207ENST00000493886 MT1HL1P0DM35 61 aa7.31□□□□□ -1.24
VCP-207ENST00000493886 SEC61BP60468 96 aaKnown RBP7.28□□□□□ -1.24
VCP-207ENST00000493886 EPPK1P58107 5090 aaKnown RBP7.26□□□□□ -1.25
VCP-207ENST00000493886 KRTAP3-1Q9BYR8 98 aa7.25□□□□□ -1.25
VCP-207ENST00000493886 MYCBP2O75592 4640 aa7.24□□□□□ -1.25
VCP-207ENST00000493886 K7ERS5 55 aa7.24□□□□□ -1.25
VCP-207ENST00000493886 RPL37P61927 97 aaKnown RBP7.24□□□□□ -1.25
VCP-207ENST00000493886 XP32Q5T750 250 aa7.23□□□□□ -1.25
VCP-207ENST00000493886 KRTAP15-1Q3LI76 137 aa7.22□□□□□ -1.25
VCP-207ENST00000493886 J3QL48 77 aa7.22□□□□□ -1.25
VCP-207ENST00000493886 H0YAA0 97 aa7.2□□□□□ -1.26
VCP-207ENST00000493886 COX6B2Q6YFQ2 88 aa7.17□□□□□ -1.26
VCP-207ENST00000493886 KRTAP4-5Q9BYR2 181 aa7.15□□□□□ -1.27
VCP-207ENST00000493886 A0A1B0GU33 70 aa7.14□□□□□ -1.27
VCP-207ENST00000493886 H1FX-AS1Q4G0G2 97 aa7.09□□□□□ -1.27
VCP-207ENST00000493886 TPRXLQ17RH7 258 aa7.08□□□□□ -1.28
VCP-207ENST00000493886 C10orf95Q9H7T3 257 aa7.01□□□□□ -1.29
VCP-207ENST00000493886 LRP2P98164 4655 aa6.97□□□□□ -1.29
VCP-207ENST00000493886 KRTAP3-3Q9BYR6 98 aa6.95□□□□□ -1.3
VCP-207ENST00000493886 ABCA13Q86UQ4 5058 aa6.95□□□□□ -1.3
VCP-207ENST00000493886 A0A0D9SG42 100 aa6.94□□□□□ -1.3
VCP-207ENST00000493886 S4R3F8 94 aa6.94□□□□□ -1.3
VCP-207ENST00000493886 LPAP08519 4548 aa6.93□□□□□ -1.3
VCP-207ENST00000493886 KRTAP13-4Q3LI77 160 aa6.9□□□□□ -1.3
VCP-207ENST00000493886 KRTAP10-6P60371 365 aaPredicted RBP6.89□□□□□ -1.31
VCP-207ENST00000493886 HERC2O95714 4834 aa6.86□□□□□ -1.31
VCP-207ENST00000493886 BIRC6Q9NR09 4857 aa6.83□□□□□ -1.32
VCP-207ENST00000493886 KRTAP3-2Q9BYR7 98 aa6.83□□□□□ -1.32
VCP-207ENST00000493886 KRTAP4-1Q9BYQ7 146 aa6.71□□□□□ -1.33
VCP-207ENST00000493886 MUC17Q685J3 4493 aa6.7□□□□□ -1.34
VCP-207ENST00000493886 KRTAP12-2P59991 146 aa6.67□□□□□ -1.34
VCP-207ENST00000493886 KRTAP12-1P59990 96 aa6.57□□□□□ -1.36
VCP-207ENST00000493886 KRTAP19-2Q3LHN2 52 aa6.57□□□□□ -1.36
VCP-207ENST00000493886 CAMK2N1Q7Z7J9 78 aa6.55□□□□□ -1.36
VCP-207ENST00000493886 M0QZ58 72 aa6.52□□□□□ -1.37
VCP-207ENST00000493886 PCLOQ9Y6V0 5065 aa6.51□□□□□ -1.37
VCP-207ENST00000493886 HERC1Q15751 4861 aa6.5□□□□□ -1.37
VCP-207ENST00000493886 HMCN2Q8NDA2 5059 aa6.46□□□□□ -1.38
VCP-207ENST00000493886 PLAC4Q8WY50 150 aa6.44□□□□□ -1.38
VCP-207ENST00000493886 R4GN34 69 aa6.42□□□□□ -1.38
VCP-207ENST00000493886 MUC2Q02817 5179 aa6.42□□□□□ -1.38
VCP-207ENST00000493886 LORP23490 312 aaPredicted RBP6.39□□□□□ -1.39
VCP-207ENST00000493886 FLGP20930 4061 aaPredicted RBP6.38□□□□□ -1.39
VCP-207ENST00000493886 LCE2CQ5TA81 110 aa6.28□□□□□ -1.4
VCP-207ENST00000493886 PRO2289Q9P1D8 64 aa6.26□□□□□ -1.41
VCP-207ENST00000493886 RNF213Q63HN8 5207 aa6.16□□□□□ -1.42
VCP-207ENST00000493886 FAT4Q6V0I7 4981 aa6.14□□□□□ -1.43
VCP-207ENST00000493886 UBR4Q5T4S7 5183 aa6.14□□□□□ -1.43
VCP-207ENST00000493886 MT1HP80294 61 aa6.13□□□□□ -1.43
VCP-207ENST00000493886 M0R2T5 61 aa6.12□□□□□ -1.43
VCP-207ENST00000493886 SPRR2GQ9BYE4 73 aa5.99□□□□□ -1.45
VCP-207ENST00000493886 KRTAP19-1Q8IUB9 90 aa5.97□□□□□ -1.45
VCP-207ENST00000493886 MT2AP02795 61 aa5.97□□□□□ -1.45
VCP-207ENST00000493886 MT1FP04733 61 aa5.95□□□□□ -1.46
VCP-207ENST00000493886 KRTAP9-8Q9BYQ0 159 aa5.95□□□□□ -1.46
VCP-207ENST00000493886 KRTAP10-10P60014 251 aa5.95□□□□□ -1.46
VCP-207ENST00000493886 PP632Q6XCG6 107 aa5.85□□□□□ -1.47
VCP-207ENST00000493886 TNP1P09430 55 aa5.81□□□□□ -1.48
VCP-207ENST00000493886 INE1O15225 51 aa5.81□□□□□ -1.48
VCP-207ENST00000493886 KRTAP19-8Q3LI54 63 aa5.78□□□□□ -1.48
VCP-207ENST00000493886 KRTAP23-1A1A580 65 aa5.73□□□□□ -1.49
VCP-207ENST00000493886 KRTAP9-3Q9BYQ3 159 aa5.72□□□□□ -1.49
VCP-207ENST00000493886 MT1BP07438 61 aa5.71□□□□□ -1.5
VCP-207ENST00000493886 SPRR5A0A1B0GTR4 108 aa5.63□□□□□ -1.51
VCP-207ENST00000493886 LCE2AQ5TA79 106 aaPredicted RBP5.63□□□□□ -1.51
VCP-207ENST00000493886 KRTAP10-5P60370 271 aa5.6□□□□□ -1.51
VCP-207ENST00000493886 MT1XP80297 61 aa5.6□□□□□ -1.51
VCP-207ENST00000493886 LCE3AQ5TA76 89 aa5.58□□□□□ -1.52
VCP-207ENST00000493886 LCE2BO14633 110 aa5.52□□□□□ -1.53
VCP-207ENST00000493886 KRTAP10-7P60409 375 aaPredicted RBP5.41□□□□□ -1.54
VCP-207ENST00000493886 KRTAP10-12P60413 245 aa5.41□□□□□ -1.54
VCP-207ENST00000493886 KRTAP8-1Q8IUC2 63 aa5.4□□□□□ -1.55
VCP-207ENST00000493886 USH2AO75445 5202 aa5.33□□□□□ -1.56
VCP-207ENST00000493886 KRTAP12-3P60328 96 aa5.28□□□□□ -1.56
VCP-207ENST00000493886 KMT2DO14686 5537 aa5.27□□□□□ -1.57
VCP-207ENST00000493886 KRTAP19-5Q3LI72 72 aa5.14□□□□□ -1.59
VCP-207ENST00000493886 KRTAP4-8A0A0G2JLE6 195 aa5.13□□□□□ -1.59
VCP-207ENST00000493886 KRTAP4-8Q9BYQ9 185 aa5.13□□□□□ -1.59
VCP-207ENST00000493886 SSPOA2VEC9 5147 aa5.09□□□□□ -1.6
VCP-207ENST00000493886 KRTAP19-6Q3LI70 58 aa5.06□□□□□ -1.6
VCP-207ENST00000493886 LCE2DQ5TA82 110 aaPredicted RBP5.02□□□□□ -1.61
VCP-207ENST00000493886 KRTAP19-7Q3SYF9 63 aa4.99□□□□□ -1.61
VCP-207ENST00000493886 LCE3CQ5T5A8 94 aa4.95□□□□□ -1.62
VCP-207ENST00000493886 FSIP2Q5CZC0 6907 aa4.91□□□□□ -1.62
VCP-207ENST00000493886 KRTAP9-2Q9BYQ4 174 aa4.88□□□□□ -1.63
VCP-207ENST00000493886 MT1EP04732 61 aa4.87□□□□□ -1.63
VCP-207ENST00000493886 KRTAP4-7Q9BYR0 210 aa4.86□□□□□ -1.63
VCP-207ENST00000493886 KRTAP9-6A8MVA2 160 aa4.84□□□□□ -1.63
VCP-207ENST00000493886 MT1LQ93083 61 aa4.83□□□□□ -1.64
VCP-207ENST00000493886 KRTAP19-4Q3LI73 84 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms