RNA–Protein interactions for RNA: ENST00000491165.5

USF3-203, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USF3, Length 2,133 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-203ENST00000491165 C7orf65Q6ZTY9 151 aa12.4□□□□□ -0.42
USF3-203ENST00000491165 LRP2P98164 4655 aa12.37□□□□□ -0.43
USF3-203ENST00000491165 C9orf92A6NGG3 77 aa12.32□□□□□ -0.44
USF3-203ENST00000491165 SPATA8Q6RVD6 105 aa12.26□□□□□ -0.45
USF3-203ENST00000491165 TPRXLQ17RH7 258 aa12.25□□□□□ -0.45
USF3-203ENST00000491165 UQCR11O14957 56 aa12.23□□□□□ -0.45
USF3-203ENST00000491165 MIR22HGQ0VDD5 57 aa12.2□□□□□ -0.46
USF3-203ENST00000491165 RBM12B-AS1Q9P1G2 102 aa12.2□□□□□ -0.46
USF3-203ENST00000491165 XP32Q5T750 250 aa12.16□□□□□ -0.46
USF3-203ENST00000491165 C20orf166-AS1Q96NR2 134 aa12.11□□□□□ -0.47
USF3-203ENST00000491165 A8MUU9 505 aa12.1□□□□□ -0.47
USF3-203ENST00000491165 UBR4Q5T4S7 5183 aa12.02□□□□□ -0.49
USF3-203ENST00000491165 RPL37P61927 97 aaKnown RBP11.97□□□□□ -0.49
USF3-203ENST00000491165 MUC2Q02817 5179 aa11.94□□□□□ -0.5
USF3-203ENST00000491165 MUC17Q685J3 4493 aa11.93□□□□□ -0.5
USF3-203ENST00000491165 PRAC1Q96KF2 57 aa11.93□□□□□ -0.5
USF3-203ENST00000491165 KRTAP3-1Q9BYR8 98 aa11.92□□□□□ -0.5
USF3-203ENST00000491165 ADM2Q7Z4H4 148 aa11.9□□□□□ -0.5
USF3-203ENST00000491165 RNF213Q63HN8 5207 aa11.81□□□□□ -0.52
USF3-203ENST00000491165 H0YAA0 97 aa11.78□□□□□ -0.52
USF3-203ENST00000491165 SEC61BP60468 96 aaKnown RBP11.77□□□□□ -0.52
USF3-203ENST00000491165 KRTAP4-1Q9BYQ7 146 aa11.76□□□□□ -0.53
USF3-203ENST00000491165 A0A1B0GU33 70 aa11.75□□□□□ -0.53
USF3-203ENST00000491165 COX6B2Q6YFQ2 88 aa11.75□□□□□ -0.53
USF3-203ENST00000491165 H1FX-AS1Q4G0G2 97 aa11.71□□□□□ -0.54
USF3-203ENST00000491165 CSAG1Q6PB30 78 aa11.6□□□□□ -0.55
USF3-203ENST00000491165 LINC01554Q52M75 96 aa11.59□□□□□ -0.55
USF3-203ENST00000491165 FAT4Q6V0I7 4981 aa11.44□□□□□ -0.58
USF3-203ENST00000491165 K7ERS5 55 aa11.42□□□□□ -0.58
USF3-203ENST00000491165 KRTAP3-3Q9BYR6 98 aa11.42□□□□□ -0.58
USF3-203ENST00000491165 KRTAP19-2Q3LHN2 52 aa11.36□□□□□ -0.59
USF3-203ENST00000491165 KRTAP10-6P60371 365 aaPredicted RBP11.35□□□□□ -0.59
USF3-203ENST00000491165 S4R3F8 94 aa11.35□□□□□ -0.59
USF3-203ENST00000491165 KRTAP25-1Q3LHN0 102 aa11.31□□□□□ -0.6
USF3-203ENST00000491165 KRTAP3-2Q9BYR7 98 aa11.26□□□□□ -0.61
USF3-203ENST00000491165 LCE2CQ5TA81 110 aa11.25□□□□□ -0.61
USF3-203ENST00000491165 KRTAP13-4Q3LI77 160 aa11.23□□□□□ -0.61
USF3-203ENST00000491165 FLGP20930 4061 aaPredicted RBP11.21□□□□□ -0.61
USF3-203ENST00000491165 A0A0D9SG42 100 aa11.15□□□□□ -0.62
USF3-203ENST00000491165 ROMO1P60602 79 aa11.14□□□□□ -0.63
USF3-203ENST00000491165 P0C880 135 aa11.11□□□□□ -0.63
USF3-203ENST00000491165 CRIPTQ9P021 101 aa11.08□□□□□ -0.64
USF3-203ENST00000491165 MT1HP80294 61 aa11.02□□□□□ -0.64
USF3-203ENST00000491165 LCE2AQ5TA79 106 aaPredicted RBP10.91□□□□□ -0.66
USF3-203ENST00000491165 KRTAP12-2P59991 146 aa10.88□□□□□ -0.67
USF3-203ENST00000491165 KRTAP12-1P59990 96 aa10.81□□□□□ -0.68
USF3-203ENST00000491165 M0QZ58 72 aa10.81□□□□□ -0.68
USF3-203ENST00000491165 M0R2T5 61 aa10.8□□□□□ -0.68
USF3-203ENST00000491165 SPINT4Q6UDR6 99 aa10.78□□□□□ -0.68
USF3-203ENST00000491165 C10orf95Q9H7T3 257 aa10.7□□□□□ -0.7
USF3-203ENST00000491165 LORP23490 312 aaPredicted RBP10.64□□□□□ -0.71
USF3-203ENST00000491165 KRTAP9-8Q9BYQ0 159 aa10.57□□□□□ -0.72
USF3-203ENST00000491165 H3BS24 57 aa10.56□□□□□ -0.72
USF3-203ENST00000491165 R4GN34 69 aa10.52□□□□□ -0.72
USF3-203ENST00000491165 MT2AP02795 61 aa10.48□□□□□ -0.73
USF3-203ENST00000491165 MT1FP04733 61 aa10.43□□□□□ -0.74
USF3-203ENST00000491165 KRTAP10-10P60014 251 aa10.33□□□□□ -0.76
USF3-203ENST00000491165 KRTAP15-1Q3LI76 137 aa10.31□□□□□ -0.76
USF3-203ENST00000491165 KRTAP9-3Q9BYQ3 159 aa10.19□□□□□ -0.78
USF3-203ENST00000491165 KRTAP19-1Q8IUB9 90 aa10.09□□□□□ -0.79
USF3-203ENST00000491165 NDUFAF8A1L188 74 aa10.04□□□□□ -0.8
USF3-203ENST00000491165 LCE2BO14633 110 aa10.02□□□□□ -0.81
USF3-203ENST00000491165 SPRR2GQ9BYE4 73 aa10.01□□□□□ -0.81
USF3-203ENST00000491165 CAMK2N1Q7Z7J9 78 aa10□□□□□ -0.81
USF3-203ENST00000491165 LCE2DQ5TA82 110 aaPredicted RBP9.98□□□□□ -0.81
USF3-203ENST00000491165 USH2AO75445 5202 aa9.97□□□□□ -0.81
USF3-203ENST00000491165 FSIP2Q5CZC0 6907 aa9.93□□□□□ -0.82
USF3-203ENST00000491165 KRTAP9-2Q9BYQ4 174 aa9.9□□□□□ -0.82
USF3-203ENST00000491165 PP632Q6XCG6 107 aa9.88□□□□□ -0.83
USF3-203ENST00000491165 PLAC4Q8WY50 150 aa9.87□□□□□ -0.83
USF3-203ENST00000491165 KRTAP19-8Q3LI54 63 aa9.81□□□□□ -0.84
USF3-203ENST00000491165 MT1BP07438 61 aa9.78□□□□□ -0.84
USF3-203ENST00000491165 SSPOA2VEC9 5147 aa9.72□□□□□ -0.85
USF3-203ENST00000491165 TNP1P09430 55 aa9.64□□□□□ -0.87
USF3-203ENST00000491165 KRTAP23-1A1A580 65 aa9.55□□□□□ -0.88
USF3-203ENST00000491165 CRCT1Q9UGL9 99 aa9.44□□□□□ -0.9
USF3-203ENST00000491165 LUZP6Q538Z0 58 aa9.44□□□□□ -0.9
USF3-203ENST00000491165 KRTAP19-6Q3LI70 58 aa9.43□□□□□ -0.9
USF3-203ENST00000491165 MT1XP80297 61 aa9.37□□□□□ -0.91
USF3-203ENST00000491165 FCGBPQ9Y6R7 5405 aaPredicted RBP9.34□□□□□ -0.91
USF3-203ENST00000491165 KRTAP10-5P60370 271 aa9.34□□□□□ -0.91
USF3-203ENST00000491165 KRTAP9-6A0A140TA67 174 aa9.25□□□□□ -0.93
USF3-203ENST00000491165 SPRR5A0A1B0GTR4 108 aa9.2□□□□□ -0.94
USF3-203ENST00000491165 PRO2289Q9P1D8 64 aa9.16□□□□□ -0.94
USF3-203ENST00000491165 LCE3AQ5TA76 89 aa9.1□□□□□ -0.95
USF3-203ENST00000491165 KMT2DO14686 5537 aa9.02□□□□□ -0.97
USF3-203ENST00000491165 KRTAP10-7P60409 375 aaPredicted RBP8.99□□□□□ -0.97
USF3-203ENST00000491165 MACF1Q9UPN3 7388 aaKnown RBP8.97□□□□□ -0.97
USF3-203ENST00000491165 A0A0A0MQY5 61 aa8.97□□□□□ -0.97
USF3-203ENST00000491165 KRTAP8-1Q8IUC2 63 aa8.89□□□□□ -0.99
USF3-203ENST00000491165 KRTAP10-12P60413 245 aa8.85□□□□□ -0.99
USF3-203ENST00000491165 KRTAP4-8A0A0G2JLE6 195 aa8.79□□□□□ -1
USF3-203ENST00000491165 KRTAP4-8Q9BYQ9 185 aa8.79□□□□□ -1
USF3-203ENST00000491165 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.78□□□□□ -1
USF3-203ENST00000491165 SYNE2Q8WXH0 6885 aaKnown RBP8.77□□□□□ -1.01
USF3-203ENST00000491165 KRTAP12-3P60328 96 aa8.68□□□□□ -1.02
USF3-203ENST00000491165 KRTAP9-7A8MTY7 169 aa8.42□□□□□ -1.06
USF3-203ENST00000491165 MUC12Q9UKN1 5478 aa8.42□□□□□ -1.06
USF3-203ENST00000491165 KRTAP5-9P26371 169 aa8.39□□□□□ -1.07
USF3-203ENST00000491165 KRTAP6-3Q3LI67 103 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms