RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 KRTAP4-1Q9BYQ7 146 aa7.09□□□□□ -1.27
CLK3-204ENST00000483723 MUC17Q685J3 4493 aa7.07□□□□□ -1.28
CLK3-204ENST00000483723 SVIPQ8NHG7 77 aa7.07□□□□□ -1.28
CLK3-204ENST00000483723 SPTSSBQ8NFR3 76 aa7.06□□□□□ -1.28
CLK3-204ENST00000483723 RBM12B-AS1Q9P1G2 102 aa7.06□□□□□ -1.28
CLK3-204ENST00000483723 H1FX-AS1Q4G0G2 97 aa7.05□□□□□ -1.28
CLK3-204ENST00000483723 PSPHP1O15172 72 aa7.04□□□□□ -1.28
CLK3-204ENST00000483723 Q5VV11 94 aa7.02□□□□□ -1.29
CLK3-204ENST00000483723 PRR15LQ9BU68 103 aa7.01□□□□□ -1.29
CLK3-204ENST00000483723 LCA10Q71F78 164 aa6.98□□□□□ -1.29
CLK3-204ENST00000483723 S4R3F8 94 aa6.98□□□□□ -1.29
CLK3-204ENST00000483723 KRTAP19-2Q3LHN2 52 aa6.96□□□□□ -1.3
CLK3-204ENST00000483723 A0A1B0GU69 56 aa6.95□□□□□ -1.3
CLK3-204ENST00000483723 RNF213Q63HN8 5207 aa6.93□□□□□ -1.3
CLK3-204ENST00000483723 SEC61GP60059 68 aa6.87□□□□□ -1.31
CLK3-204ENST00000483723 CSAG1Q6PB30 78 aa6.84□□□□□ -1.31
CLK3-204ENST00000483723 A6NED7 52 aa6.81□□□□□ -1.32
CLK3-204ENST00000483723 BRK1Q8WUW1 75 aa6.79□□□□□ -1.32
CLK3-204ENST00000483723 KRTAP10-6P60371 365 aaPredicted RBP6.79□□□□□ -1.32
CLK3-204ENST00000483723 UQCR11O14957 56 aa6.76□□□□□ -1.33
CLK3-204ENST00000483723 CDC42SE1Q9NRR8 79 aa6.76□□□□□ -1.33
CLK3-204ENST00000483723 SPATA8Q6RVD6 105 aa6.74□□□□□ -1.33
CLK3-204ENST00000483723 A0A1B0GU33 70 aa6.73□□□□□ -1.33
CLK3-204ENST00000483723 H0YAA0 97 aa6.73□□□□□ -1.33
CLK3-204ENST00000483723 LCE2CQ5TA81 110 aa6.73□□□□□ -1.33
CLK3-204ENST00000483723 MUC2Q02817 5179 aa6.72□□□□□ -1.33
CLK3-204ENST00000483723 A8MU10 97 aa6.72□□□□□ -1.33
CLK3-204ENST00000483723 PRO0628Q9UI54 55 aa6.72□□□□□ -1.33
CLK3-204ENST00000483723 MIR22HGQ0VDD5 57 aa6.69□□□□□ -1.34
CLK3-204ENST00000483723 ADM2Q7Z4H4 148 aa6.69□□□□□ -1.34
CLK3-204ENST00000483723 P0C880 135 aa6.68□□□□□ -1.34
CLK3-204ENST00000483723 FLGP20930 4061 aaPredicted RBP6.63□□□□□ -1.35
CLK3-204ENST00000483723 KRTAP13-4Q3LI77 160 aa6.59□□□□□ -1.36
CLK3-204ENST00000483723 FAT4Q6V0I7 4981 aa6.58□□□□□ -1.36
CLK3-204ENST00000483723 MT1HP80294 61 aa6.56□□□□□ -1.36
CLK3-204ENST00000483723 LCE2AQ5TA79 106 aaPredicted RBP6.56□□□□□ -1.36
CLK3-204ENST00000483723 M0QZ58 72 aa6.53□□□□□ -1.36
CLK3-204ENST00000483723 LORP23490 312 aaPredicted RBP6.48□□□□□ -1.37
CLK3-204ENST00000483723 A6NN06 94 aa6.44□□□□□ -1.38
CLK3-204ENST00000483723 PMAIP1Q13794 54 aa6.44□□□□□ -1.38
CLK3-204ENST00000483723 M0R2T5 61 aa6.43□□□□□ -1.38
CLK3-204ENST00000483723 KRTAP9-2Q9BYQ4 174 aa6.42□□□□□ -1.38
CLK3-204ENST00000483723 R4GN34 69 aa6.42□□□□□ -1.38
CLK3-204ENST00000483723 A0A0D9SG42 100 aa6.4□□□□□ -1.38
CLK3-204ENST00000483723 CRIPTQ9P021 101 aa6.4□□□□□ -1.38
CLK3-204ENST00000483723 KRTAP9-8Q9BYQ0 159 aa6.36□□□□□ -1.39
CLK3-204ENST00000483723 K7ERS5 55 aa6.34□□□□□ -1.39
CLK3-204ENST00000483723 KRTAP12-1P59990 96 aa6.34□□□□□ -1.39
CLK3-204ENST00000483723 MT2AP02795 61 aa6.33□□□□□ -1.4
CLK3-204ENST00000483723 KRTAP12-2P59991 146 aa6.31□□□□□ -1.4
CLK3-204ENST00000483723 MT1FP04733 61 aa6.29□□□□□ -1.4
CLK3-204ENST00000483723 LINC01554Q52M75 96 aa6.28□□□□□ -1.4
CLK3-204ENST00000483723 SPINT4Q6UDR6 99 aa6.26□□□□□ -1.41
CLK3-204ENST00000483723 SPRR2GQ9BYE4 73 aa6.26□□□□□ -1.41
CLK3-204ENST00000483723 KRTAP10-10P60014 251 aa6.25□□□□□ -1.41
CLK3-204ENST00000483723 KRTAP19-1Q8IUB9 90 aa6.24□□□□□ -1.41
CLK3-204ENST00000483723 KRTAP9-6A0A140TA67 174 aa6.22□□□□□ -1.41
CLK3-204ENST00000483723 KTN1-AS1Q86SY8 53 aa6.2□□□□□ -1.42
CLK3-204ENST00000483723 LCE2BO14633 110 aa6.18□□□□□ -1.42
CLK3-204ENST00000483723 ROMO1P60602 79 aa6.13□□□□□ -1.43
CLK3-204ENST00000483723 KRTAP9-3Q9BYQ3 159 aa6.13□□□□□ -1.43
CLK3-204ENST00000483723 KRTAP19-8Q3LI54 63 aa6.11□□□□□ -1.43
CLK3-204ENST00000483723 CRCT1Q9UGL9 99 aa6.08□□□□□ -1.44
CLK3-204ENST00000483723 FSIP2Q5CZC0 6907 aa6.04□□□□□ -1.44
CLK3-204ENST00000483723 PRAC1Q96KF2 57 aa6.02□□□□□ -1.45
CLK3-204ENST00000483723 PLAC4Q8WY50 150 aa6.02□□□□□ -1.45
CLK3-204ENST00000483723 CAMK2N1Q7Z7J9 78 aa6.01□□□□□ -1.45
CLK3-204ENST00000483723 C10orf95Q9H7T3 257 aa6.01□□□□□ -1.45
CLK3-204ENST00000483723 MT1BP07438 61 aa6□□□□□ -1.45
CLK3-204ENST00000483723 KRTAP25-1Q3LHN0 102 aa5.9□□□□□ -1.47
CLK3-204ENST00000483723 MT1XP80297 61 aa5.81□□□□□ -1.48
CLK3-204ENST00000483723 KRTAP10-5P60370 271 aa5.8□□□□□ -1.48
CLK3-204ENST00000483723 TNP1P09430 55 aa5.77□□□□□ -1.49
CLK3-204ENST00000483723 USH2AO75445 5202 aa5.74□□□□□ -1.49
CLK3-204ENST00000483723 SSPOA2VEC9 5147 aa5.71□□□□□ -1.5
CLK3-204ENST00000483723 KRTAP23-1A1A580 65 aa5.69□□□□□ -1.5
CLK3-204ENST00000483723 PRO2289Q9P1D8 64 aa5.69□□□□□ -1.5
CLK3-204ENST00000483723 PP632Q6XCG6 107 aa5.66□□□□□ -1.5
CLK3-204ENST00000483723 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.65□□□□□ -1.51
CLK3-204ENST00000483723 KRTAP9-7A8MTY7 169 aa5.6□□□□□ -1.51
CLK3-204ENST00000483723 FCGBPQ9Y6R7 5405 aaPredicted RBP5.57□□□□□ -1.52
CLK3-204ENST00000483723 KRTAP10-7P60409 375 aaPredicted RBP5.57□□□□□ -1.52
CLK3-204ENST00000483723 KRTAP19-6Q3LI70 58 aa5.56□□□□□ -1.52
CLK3-204ENST00000483723 KRTAP10-12P60413 245 aa5.52□□□□□ -1.53
CLK3-204ENST00000483723 LCE3AQ5TA76 89 aa5.51□□□□□ -1.53
CLK3-204ENST00000483723 KRTAP8-1Q8IUC2 63 aa5.45□□□□□ -1.54
CLK3-204ENST00000483723 MACF1Q9UPN3 7388 aaKnown RBP5.44□□□□□ -1.54
CLK3-204ENST00000483723 SYNE2Q8WXH0 6885 aaKnown RBP5.39□□□□□ -1.55
CLK3-204ENST00000483723 KRTAP4-8A0A0G2JLE6 195 aa5.33□□□□□ -1.56
CLK3-204ENST00000483723 KRTAP4-8Q9BYQ9 185 aa5.33□□□□□ -1.56
CLK3-204ENST00000483723 KRTAP12-3P60328 96 aa5.3□□□□□ -1.56
CLK3-204ENST00000483723 KRTAP6-3Q3LI67 103 aa5.3□□□□□ -1.56
CLK3-204ENST00000483723 KRTAP15-1Q3LI76 137 aa5.26□□□□□ -1.57
CLK3-204ENST00000483723 KRTAP19-5Q3LI72 72 aa5.25□□□□□ -1.57
CLK3-204ENST00000483723 KRTAP19-7Q3SYF9 63 aa5.2□□□□□ -1.58
CLK3-204ENST00000483723 KMT2DO14686 5537 aa5.14□□□□□ -1.59
CLK3-204ENST00000483723 LOC100996750A0A140TA64 210 aa5.13□□□□□ -1.59
CLK3-204ENST00000483723 KRTAP4-6Q9BYQ5 205 aa5.13□□□□□ -1.59
CLK3-204ENST00000483723 SPRR5A0A1B0GTR4 108 aa5.1□□□□□ -1.59
CLK3-204ENST00000483723 MT1EP04732 61 aa5.09□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms