RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 USH2AO75445 5202 aa6.61□□□□□ -1.35
VAMP4-203ENST00000474047 OCR1Q9BZK8 76 aa6.6□□□□□ -1.35
VAMP4-203ENST00000474047 KRTAP19-1Q8IUB9 90 aa6.56□□□□□ -1.36
VAMP4-203ENST00000474047 K7ERU9 68 aa6.55□□□□□ -1.36
VAMP4-203ENST00000474047 SSPOA2VEC9 5147 aa6.54□□□□□ -1.36
VAMP4-203ENST00000474047 KLKP1Q107X0 134 aa6.54□□□□□ -1.36
VAMP4-203ENST00000474047 A8MUN3 132 aa6.53□□□□□ -1.36
VAMP4-203ENST00000474047 NDUFC1O43677 76 aa6.53□□□□□ -1.36
VAMP4-203ENST00000474047 H3BPC8 53 aa6.52□□□□□ -1.37
VAMP4-203ENST00000474047 IMUPQ9GZP8 106 aa6.5□□□□□ -1.37
VAMP4-203ENST00000474047 MT-ATP8P03928 68 aa6.47□□□□□ -1.37
VAMP4-203ENST00000474047 SYNE2Q8WXH0 6885 aaKnown RBP6.47□□□□□ -1.37
VAMP4-203ENST00000474047 FCGBPQ9Y6R7 5405 aaPredicted RBP6.47□□□□□ -1.37
VAMP4-203ENST00000474047 KRTAP19-6Q3LI70 58 aa6.45□□□□□ -1.38
VAMP4-203ENST00000474047 SMIM20Q8N5G0 67 aa6.42□□□□□ -1.38
VAMP4-203ENST00000474047 MACF1Q9UPN3 7388 aaKnown RBP6.4□□□□□ -1.38
VAMP4-203ENST00000474047 SPRR2GQ9BYE4 73 aa6.39□□□□□ -1.39
VAMP4-203ENST00000474047 TRAV7A0A075B6U4 112 aa6.39□□□□□ -1.39
VAMP4-203ENST00000474047 Q5VV11 94 aa6.39□□□□□ -1.39
VAMP4-203ENST00000474047 CRIPTQ9P021 101 aa6.39□□□□□ -1.39
VAMP4-203ENST00000474047 H0YAA0 97 aa6.36□□□□□ -1.39
VAMP4-203ENST00000474047 DMAC1Q96GE9 116 aa6.36□□□□□ -1.39
VAMP4-203ENST00000474047 ADM2Q7Z4H4 148 aa6.35□□□□□ -1.39
VAMP4-203ENST00000474047 KRTAP19-8Q3LI54 63 aa6.33□□□□□ -1.4
VAMP4-203ENST00000474047 MT1BP07438 61 aa6.3□□□□□ -1.4
VAMP4-203ENST00000474047 KRTAP6-3Q3LI67 103 aa6.3□□□□□ -1.4
VAMP4-203ENST00000474047 ACYP2P14621 99 aa6.29□□□□□ -1.4
VAMP4-203ENST00000474047 A6NN06 94 aa6.27□□□□□ -1.41
VAMP4-203ENST00000474047 C20orf197Q8N268 126 aa6.25□□□□□ -1.41
VAMP4-203ENST00000474047 SNURFQ9Y675 71 aa6.25□□□□□ -1.41
VAMP4-203ENST00000474047 KRTAP20-1Q3LI63 56 aa6.25□□□□□ -1.41
VAMP4-203ENST00000474047 SPTSSBQ8NFR3 76 aa6.22□□□□□ -1.41
VAMP4-203ENST00000474047 NEBP20929 6669 aa6.22□□□□□ -1.41
VAMP4-203ENST00000474047 CHKB-CPT1BH3BT56 60 aa6.21□□□□□ -1.42
VAMP4-203ENST00000474047 SERP2Q8N6R1 65 aa6.21□□□□□ -1.42
VAMP4-203ENST00000474047 R4GN34 69 aa6.2□□□□□ -1.42
VAMP4-203ENST00000474047 P0C880 135 aa6.18□□□□□ -1.42
VAMP4-203ENST00000474047 KRTAP10-5P60370 271 aa6.16□□□□□ -1.42
VAMP4-203ENST00000474047 M0QZ58 72 aa6.15□□□□□ -1.42
VAMP4-203ENST00000474047 SPANXA2-OT1Q8N9U9 137 aa6.13□□□□□ -1.43
VAMP4-203ENST00000474047 PLAC4Q8WY50 150 aa6.13□□□□□ -1.43
VAMP4-203ENST00000474047 LINC01554Q52M75 96 aa6.08□□□□□ -1.44
VAMP4-203ENST00000474047 KRTAP4-8Q9BYQ9 185 aa6.05□□□□□ -1.44
VAMP4-203ENST00000474047 PRO2289Q9P1D8 64 aa6.05□□□□□ -1.44
VAMP4-203ENST00000474047 COX7CP15954 63 aa6.05□□□□□ -1.44
VAMP4-203ENST00000474047 COA5Q86WW8 74 aa5.97□□□□□ -1.45
VAMP4-203ENST00000474047 MT1XP80297 61 aa5.95□□□□□ -1.46
VAMP4-203ENST00000474047 MUC12Q9UKN1 5478 aa5.94□□□□□ -1.46
VAMP4-203ENST00000474047 ANAPC13Q9BS18 74 aa5.93□□□□□ -1.46
VAMP4-203ENST00000474047 SEC61GP60059 68 aa5.91□□□□□ -1.46
VAMP4-203ENST00000474047 H7BZZ5 65 aa5.9□□□□□ -1.47
VAMP4-203ENST00000474047 CYSTM1Q9H1C7 97 aa5.88□□□□□ -1.47
VAMP4-203ENST00000474047 SERP1Q9Y6X1 66 aa5.88□□□□□ -1.47
VAMP4-203ENST00000474047 KRTAP2-3P0C7H8 128 aa5.86□□□□□ -1.47
VAMP4-203ENST00000474047 KRTAP2-4Q9BYR9 128 aa5.86□□□□□ -1.47
VAMP4-203ENST00000474047 KRTAP5-9P26371 169 aa5.8□□□□□ -1.48
VAMP4-203ENST00000474047 KRTAP13-4Q3LI77 160 aa5.79□□□□□ -1.48
VAMP4-203ENST00000474047 KRTAP12-2P59991 146 aa5.79□□□□□ -1.48
VAMP4-203ENST00000474047 CCDC179H3BU77 68 aa5.76□□□□□ -1.49
VAMP4-203ENST00000474047 KRTAP8-1Q8IUC2 63 aa5.76□□□□□ -1.49
VAMP4-203ENST00000474047 CAMK2N1Q7Z7J9 78 aa5.75□□□□□ -1.49
VAMP4-203ENST00000474047 A0A1B0GU33 70 aa5.74□□□□□ -1.49
VAMP4-203ENST00000474047 SPRR2FQ96RM1 72 aa5.73□□□□□ -1.49
VAMP4-203ENST00000474047 KMT2DO14686 5537 aa5.73□□□□□ -1.49
VAMP4-203ENST00000474047 A0A0D9SG42 100 aa5.72□□□□□ -1.49
VAMP4-203ENST00000474047 LCE3BQ5TA77 95 aa5.72□□□□□ -1.49
VAMP4-203ENST00000474047 GPR98Q8WXG9 6306 aa5.72□□□□□ -1.49
VAMP4-203ENST00000474047 KRTAP4-8A0A0G2JLE6 195 aa5.71□□□□□ -1.5
VAMP4-203ENST00000474047 A0A1B0GU69 56 aa5.71□□□□□ -1.5
VAMP4-203ENST00000474047 SPATA8Q6RVD6 105 aa5.7□□□□□ -1.5
VAMP4-203ENST00000474047 KRTAP10-7P60409 375 aaPredicted RBP5.69□□□□□ -1.5
VAMP4-203ENST00000474047 ATP5EP56381 51 aaPredicted RBP5.68□□□□□ -1.5
VAMP4-203ENST00000474047 KRTAP9-9Q9BYP9 154 aa5.67□□□□□ -1.5
VAMP4-203ENST00000474047 KRTAP9-4Q9BYQ2 154 aa5.67□□□□□ -1.5
VAMP4-203ENST00000474047 KRTAP10-12P60413 245 aa5.65□□□□□ -1.51
VAMP4-203ENST00000474047 SPINT4Q6UDR6 99 aa5.65□□□□□ -1.51
VAMP4-203ENST00000474047 MDN1Q9NU22 5596 aa5.64□□□□□ -1.51
VAMP4-203ENST00000474047 KRTAP2-2Q9BYT5 123 aa5.62□□□□□ -1.51
VAMP4-203ENST00000474047 KRTAP2-1Q9BYU5 128 aa5.62□□□□□ -1.51
VAMP4-203ENST00000474047 SPRR2EP22531 72 aa5.62□□□□□ -1.51
VAMP4-203ENST00000474047 SPRR2BP35325 72 aa5.62□□□□□ -1.51
VAMP4-203ENST00000474047 SPRR2AP35326 72 aa5.62□□□□□ -1.51
VAMP4-203ENST00000474047 SMIM26A0A096LP01 95 aa5.6□□□□□ -1.51
VAMP4-203ENST00000474047 PRR15LQ9BU68 103 aa5.6□□□□□ -1.51
VAMP4-203ENST00000474047 TMEM258P61165 79 aa5.57□□□□□ -1.52
VAMP4-203ENST00000474047 KRTAP4-12Q9BQ66 201 aa5.56□□□□□ -1.52
VAMP4-203ENST00000474047 KRTAP4-7Q9BYR0 210 aa5.56□□□□□ -1.52
VAMP4-203ENST00000474047 KRTAP12-1P59990 96 aa5.54□□□□□ -1.52
VAMP4-203ENST00000474047 LCE1AQ5T7P2 110 aa5.51□□□□□ -1.53
VAMP4-203ENST00000474047 A8MU10 97 aa5.5□□□□□ -1.53
VAMP4-203ENST00000474047 LINC01558Q9Y6Z2 57 aa5.49□□□□□ -1.53
VAMP4-203ENST00000474047 SPRR2DP22532 72 aa5.43□□□□□ -1.54
VAMP4-203ENST00000474047 UQCR11O14957 56 aa5.38□□□□□ -1.55
VAMP4-203ENST00000474047 LCE1DQ5T752 114 aa5.34□□□□□ -1.55
VAMP4-203ENST00000474047 KRTAP4-2Q9BYR5 136 aa5.32□□□□□ -1.56
VAMP4-203ENST00000474047 TNP1P09430 55 aa5.31□□□□□ -1.56
VAMP4-203ENST00000474047 KRTAP19-7Q3SYF9 63 aa5.3□□□□□ -1.56
VAMP4-203ENST00000474047 C10orf95Q9H7T3 257 aa5.28□□□□□ -1.56
VAMP4-203ENST00000474047 V9GYY9 64 aa5.28□□□□□ -1.56
VAMP4-203ENST00000474047 KRTAP4-9Q9BYQ8 210 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 86.8 ms