RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-209ENST00000465132 COX7CP15954 63 aa8.56□□□□□ -1.04
CPSF4-209ENST00000465132 FCGBPQ9Y6R7 5405 aaPredicted RBP8.55□□□□□ -1.04
CPSF4-209ENST00000465132 C20orf197Q8N268 126 aa8.55□□□□□ -1.04
CPSF4-209ENST00000465132 ANAPC13Q9BS18 74 aa8.55□□□□□ -1.04
CPSF4-209ENST00000465132 MT1FP04733 61 aa8.5□□□□□ -1.05
CPSF4-209ENST00000465132 SNURFQ9Y675 71 aa8.5□□□□□ -1.05
CPSF4-209ENST00000465132 S4R3F8 94 aa8.5□□□□□ -1.05
CPSF4-209ENST00000465132 LCE2BO14633 110 aa8.49□□□□□ -1.05
CPSF4-209ENST00000465132 KRTAP3-1Q9BYR8 98 aa8.49□□□□□ -1.05
CPSF4-209ENST00000465132 NDUFC1O43677 76 aa8.48□□□□□ -1.05
CPSF4-209ENST00000465132 KRTAP19-1Q8IUB9 90 aa8.47□□□□□ -1.05
CPSF4-209ENST00000465132 KRTAP9-3Q9BYQ3 159 aa8.46□□□□□ -1.06
CPSF4-209ENST00000465132 KRTAP10-10P60014 251 aa8.44□□□□□ -1.06
CPSF4-209ENST00000465132 SPANXA2-OT1Q8N9U9 137 aa8.43□□□□□ -1.06
CPSF4-209ENST00000465132 DMAC1Q96GE9 116 aa8.43□□□□□ -1.06
CPSF4-209ENST00000465132 CSAG1Q6PB30 78 aa8.42□□□□□ -1.06
CPSF4-209ENST00000465132 ACYP2P14621 99 aa8.41□□□□□ -1.06
CPSF4-209ENST00000465132 LCA10Q71F78 164 aa8.38□□□□□ -1.07
CPSF4-209ENST00000465132 MACF1Q9UPN3 7388 aaKnown RBP8.33□□□□□ -1.08
CPSF4-209ENST00000465132 SYNE2Q8WXH0 6885 aaKnown RBP8.31□□□□□ -1.08
CPSF4-209ENST00000465132 SPTSSBQ8NFR3 76 aa8.3□□□□□ -1.08
CPSF4-209ENST00000465132 CHKB-CPT1BH3BT56 60 aa8.27□□□□□ -1.09
CPSF4-209ENST00000465132 H7BZZ5 65 aa8.26□□□□□ -1.09
CPSF4-209ENST00000465132 CCDC179H3BU77 68 aa8.24□□□□□ -1.09
CPSF4-209ENST00000465132 KRTAP19-6Q3LI70 58 aa8.24□□□□□ -1.09
CPSF4-209ENST00000465132 KRTAP3-3Q9BYR6 98 aa8.23□□□□□ -1.09
CPSF4-209ENST00000465132 ATP5EP56381 51 aaPredicted RBP8.2□□□□□ -1.1
CPSF4-209ENST00000465132 H0YAA0 97 aa8.16□□□□□ -1.1
CPSF4-209ENST00000465132 CYSTM1Q9H1C7 97 aa8.16□□□□□ -1.1
CPSF4-209ENST00000465132 TMEM258P61165 79 aa8.11□□□□□ -1.11
CPSF4-209ENST00000465132 COA5Q86WW8 74 aa8.1□□□□□ -1.11
CPSF4-209ENST00000465132 CRIPTQ9P021 101 aa8.05□□□□□ -1.12
CPSF4-209ENST00000465132 KRTAP6-3Q3LI67 103 aa8.04□□□□□ -1.12
CPSF4-209ENST00000465132 ADM2Q7Z4H4 148 aa8.02□□□□□ -1.13
CPSF4-209ENST00000465132 PCP4P48539 62 aa7.97□□□□□ -1.13
CPSF4-209ENST00000465132 SEC61GP60059 68 aa7.95□□□□□ -1.14
CPSF4-209ENST00000465132 SERP1Q9Y6X1 66 aa7.89□□□□□ -1.15
CPSF4-209ENST00000465132 NEBP20929 6669 aa7.86□□□□□ -1.15
CPSF4-209ENST00000465132 R4GN34 69 aa7.85□□□□□ -1.15
CPSF4-209ENST00000465132 SPRR2GQ9BYE4 73 aa7.84□□□□□ -1.15
CPSF4-209ENST00000465132 P0C880 135 aa7.82□□□□□ -1.16
CPSF4-209ENST00000465132 KRTAP3-2Q9BYR7 98 aa7.81□□□□□ -1.16
CPSF4-209ENST00000465132 M0QZ58 72 aa7.77□□□□□ -1.17
CPSF4-209ENST00000465132 PRR15LQ9BU68 103 aa7.77□□□□□ -1.17
CPSF4-209ENST00000465132 A0A1B0GU69 56 aa7.76□□□□□ -1.17
CPSF4-209ENST00000465132 MUC12Q9UKN1 5478 aa7.75□□□□□ -1.17
CPSF4-209ENST00000465132 A6NN06 94 aa7.74□□□□□ -1.17
CPSF4-209ENST00000465132 Q5VV11 94 aa7.74□□□□□ -1.17
CPSF4-209ENST00000465132 MT1BP07438 61 aa7.72□□□□□ -1.17
CPSF4-209ENST00000465132 KRTAP19-8Q3LI54 63 aa7.69□□□□□ -1.18
CPSF4-209ENST00000465132 V9GYY9 64 aa7.67□□□□□ -1.18
CPSF4-209ENST00000465132 LINC01558Q9Y6Z2 57 aa7.66□□□□□ -1.18
CPSF4-209ENST00000465132 A0A1B0GU33 70 aa7.65□□□□□ -1.18
CPSF4-209ENST00000465132 RPS28P62857 69 aaKnown RBP7.63□□□□□ -1.19
CPSF4-209ENST00000465132 LINC01554Q52M75 96 aa7.61□□□□□ -1.19
CPSF4-209ENST00000465132 PLAC4Q8WY50 150 aa7.61□□□□□ -1.19
CPSF4-209ENST00000465132 KRTAP10-5P60370 271 aa7.6□□□□□ -1.19
CPSF4-209ENST00000465132 SMIM26A0A096LP01 95 aa7.58□□□□□ -1.2
CPSF4-209ENST00000465132 KRTAP20-1Q3LI63 56 aa7.58□□□□□ -1.2
CPSF4-209ENST00000465132 KRTAP5-9P26371 169 aa7.54□□□□□ -1.2
CPSF4-209ENST00000465132 Q1T7F1 81 aa7.53□□□□□ -1.2
CPSF4-209ENST00000465132 KMT2DO14686 5537 aa7.51□□□□□ -1.21
CPSF4-209ENST00000465132 MDN1Q9NU22 5596 aa7.51□□□□□ -1.21
CPSF4-209ENST00000465132 UQCR11O14957 56 aa7.46□□□□□ -1.22
CPSF4-209ENST00000465132 KRTAP13-4Q3LI77 160 aa7.45□□□□□ -1.22
CPSF4-209ENST00000465132 SPATA8Q6RVD6 105 aa7.44□□□□□ -1.22
CPSF4-209ENST00000465132 PRO2289Q9P1D8 64 aa7.44□□□□□ -1.22
CPSF4-209ENST00000465132 A0A0D9SG42 100 aa7.39□□□□□ -1.23
CPSF4-209ENST00000465132 PSPHP1O15172 72 aa7.37□□□□□ -1.23
CPSF4-209ENST00000465132 CAMK2N1Q7Z7J9 78 aa7.32□□□□□ -1.24
CPSF4-209ENST00000465132 KRTAP2-3P0C7H8 128 aa7.3□□□□□ -1.24
CPSF4-209ENST00000465132 SPINT4Q6UDR6 99 aa7.3□□□□□ -1.24
CPSF4-209ENST00000465132 KRTAP2-4Q9BYR9 128 aa7.3□□□□□ -1.24
CPSF4-209ENST00000465132 MIR22HGQ0VDD5 57 aa7.29□□□□□ -1.24
CPSF4-209ENST00000465132 A6NED7 52 aa7.24□□□□□ -1.25
CPSF4-209ENST00000465132 SPRR2FQ96RM1 72 aa7.24□□□□□ -1.25
CPSF4-209ENST00000465132 A8MU10 97 aa7.23□□□□□ -1.25
CPSF4-209ENST00000465132 KRTAP12-1P59990 96 aa7.22□□□□□ -1.25
CPSF4-209ENST00000465132 K7ERS5 55 aa7.21□□□□□ -1.26
CPSF4-209ENST00000465132 MT1XP80297 61 aa7.21□□□□□ -1.26
CPSF4-209ENST00000465132 SPRR2EP22531 72 aa7.2□□□□□ -1.26
CPSF4-209ENST00000465132 SPRR2BP35325 72 aa7.2□□□□□ -1.26
CPSF4-209ENST00000465132 SPRR2AP35326 72 aa7.2□□□□□ -1.26
CPSF4-209ENST00000465132 KRTAP12-2P59991 146 aa7.16□□□□□ -1.26
CPSF4-209ENST00000465132 KRTAP8-1Q8IUC2 63 aa7.11□□□□□ -1.27
CPSF4-209ENST00000465132 LCE1AQ5T7P2 110 aa7.08□□□□□ -1.28
CPSF4-209ENST00000465132 KRTAP2-2Q9BYT5 123 aa7.06□□□□□ -1.28
CPSF4-209ENST00000465132 KRTAP2-1Q9BYU5 128 aa7.06□□□□□ -1.28
CPSF4-209ENST00000465132 CDC42SE1Q9NRR8 79 aa7.01□□□□□ -1.29
CPSF4-209ENST00000465132 SPRR2DP22532 72 aa6.97□□□□□ -1.29
CPSF4-209ENST00000465132 KRTAP4-8A0A0G2JLE6 195 aa6.95□□□□□ -1.3
CPSF4-209ENST00000465132 KRTAP4-8Q9BYQ9 185 aa6.95□□□□□ -1.3
CPSF4-209ENST00000465132 KRTAP10-12P60413 245 aa6.9□□□□□ -1.3
CPSF4-209ENST00000465132 TNP1P09430 55 aa6.88□□□□□ -1.31
CPSF4-209ENST00000465132 KRTAP10-7P60409 375 aaPredicted RBP6.87□□□□□ -1.31
CPSF4-209ENST00000465132 C10orf95Q9H7T3 257 aa6.84□□□□□ -1.31
CPSF4-209ENST00000465132 LCE3BQ5TA77 95 aa6.8□□□□□ -1.32
CPSF4-209ENST00000465132 BRK1Q8WUW1 75 aa6.76□□□□□ -1.33
CPSF4-209ENST00000465132 KRTAP25-1Q3LHN0 102 aa6.75□□□□□ -1.33
CPSF4-209ENST00000465132 ROMO1P60602 79 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms