RNA–Protein interactions for RNA: ENST00000461654.1

TMEM39A-203, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 588 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-203ENST00000461654 ACYP2P14621 99 aa7.7□□□□□ -1.18
TMEM39A-203ENST00000461654 MPLKIPQ8TAP9 179 aa7.69□□□□□ -1.18
TMEM39A-203ENST00000461654 KRTAP9-6A0A140TA67 174 aa7.66□□□□□ -1.18
TMEM39A-203ENST00000461654 LCE2BO14633 110 aa7.63□□□□□ -1.19
TMEM39A-203ENST00000461654 KRTAP3-1Q9BYR8 98 aa7.63□□□□□ -1.19
TMEM39A-203ENST00000461654 H1FX-AS1Q4G0G2 97 aa7.62□□□□□ -1.19
TMEM39A-203ENST00000461654 CHKB-CPT1BH3BT56 60 aa7.61□□□□□ -1.19
TMEM39A-203ENST00000461654 LORP23490 312 aaPredicted RBP7.6□□□□□ -1.19
TMEM39A-203ENST00000461654 COA5Q86WW8 74 aa7.59□□□□□ -1.19
TMEM39A-203ENST00000461654 SERP1Q9Y6X1 66 aa7.59□□□□□ -1.19
TMEM39A-203ENST00000461654 KRTAP10-6P60371 365 aaPredicted RBP7.57□□□□□ -1.2
TMEM39A-203ENST00000461654 S4R3F8 94 aa7.54□□□□□ -1.2
TMEM39A-203ENST00000461654 M0R2T5 61 aa7.53□□□□□ -1.2
TMEM39A-203ENST00000461654 SPTSSBQ8NFR3 76 aa7.52□□□□□ -1.21
TMEM39A-203ENST00000461654 RPS28P62857 69 aaKnown RBP7.49□□□□□ -1.21
TMEM39A-203ENST00000461654 FSIP2Q5CZC0 6907 aa7.49□□□□□ -1.21
TMEM39A-203ENST00000461654 CRCT1Q9UGL9 99 aa7.48□□□□□ -1.21
TMEM39A-203ENST00000461654 LCA10Q71F78 164 aa7.46□□□□□ -1.22
TMEM39A-203ENST00000461654 FLGP20930 4061 aaPredicted RBP7.45□□□□□ -1.22
TMEM39A-203ENST00000461654 CSAG1Q6PB30 78 aa7.41□□□□□ -1.22
TMEM39A-203ENST00000461654 SMIM26A0A096LP01 95 aa7.38□□□□□ -1.23
TMEM39A-203ENST00000461654 KRTAP9-8Q9BYQ0 159 aa7.33□□□□□ -1.24
TMEM39A-203ENST00000461654 V9GYY9 64 aa7.31□□□□□ -1.24
TMEM39A-203ENST00000461654 SEC61GP60059 68 aa7.28□□□□□ -1.24
TMEM39A-203ENST00000461654 Q1T7F1 81 aa7.24□□□□□ -1.25
TMEM39A-203ENST00000461654 PRR15LQ9BU68 103 aa7.24□□□□□ -1.25
TMEM39A-203ENST00000461654 LINC01558Q9Y6Z2 57 aa7.24□□□□□ -1.25
TMEM39A-203ENST00000461654 A0A1B0GU69 56 aa7.23□□□□□ -1.25
TMEM39A-203ENST00000461654 H0YAA0 97 aa7.19□□□□□ -1.26
TMEM39A-203ENST00000461654 MT2AP02795 61 aa7.19□□□□□ -1.26
TMEM39A-203ENST00000461654 ADM2Q7Z4H4 148 aa7.17□□□□□ -1.26
TMEM39A-203ENST00000461654 MT1FP04733 61 aa7.13□□□□□ -1.27
TMEM39A-203ENST00000461654 PSPHP1O15172 72 aa7.12□□□□□ -1.27
TMEM39A-203ENST00000461654 KRTAP9-3Q9BYQ3 159 aa7.1□□□□□ -1.27
TMEM39A-203ENST00000461654 KRTAP10-10P60014 251 aa7.08□□□□□ -1.28
TMEM39A-203ENST00000461654 P0C880 135 aa7.05□□□□□ -1.28
TMEM39A-203ENST00000461654 USH2AO75445 5202 aa7.04□□□□□ -1.28
TMEM39A-203ENST00000461654 A0A1B0GU33 70 aa7.03□□□□□ -1.28
TMEM39A-203ENST00000461654 Q5VV11 94 aa7.02□□□□□ -1.29
TMEM39A-203ENST00000461654 SSPOA2VEC9 5147 aa7.02□□□□□ -1.29
TMEM39A-203ENST00000461654 UQCR11O14957 56 aa6.98□□□□□ -1.29
TMEM39A-203ENST00000461654 CRIPTQ9P021 101 aa6.98□□□□□ -1.29
TMEM39A-203ENST00000461654 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.96□□□□□ -1.3
TMEM39A-203ENST00000461654 R4GN34 69 aa6.96□□□□□ -1.3
TMEM39A-203ENST00000461654 A6NED7 52 aa6.95□□□□□ -1.3
TMEM39A-203ENST00000461654 M0QZ58 72 aa6.95□□□□□ -1.3
TMEM39A-203ENST00000461654 KRTAP19-1Q8IUB9 90 aa6.94□□□□□ -1.3
TMEM39A-203ENST00000461654 MIR22HGQ0VDD5 57 aa6.88□□□□□ -1.31
TMEM39A-203ENST00000461654 KRTAP9-7A8MTY7 169 aa6.87□□□□□ -1.31
TMEM39A-203ENST00000461654 SPATA8Q6RVD6 105 aa6.87□□□□□ -1.31
TMEM39A-203ENST00000461654 FCGBPQ9Y6R7 5405 aaPredicted RBP6.86□□□□□ -1.31
TMEM39A-203ENST00000461654 KRTAP19-6Q3LI70 58 aa6.84□□□□□ -1.31
TMEM39A-203ENST00000461654 KRTAP13-4Q3LI77 160 aa6.83□□□□□ -1.32
TMEM39A-203ENST00000461654 LINC01554Q52M75 96 aa6.81□□□□□ -1.32
TMEM39A-203ENST00000461654 A0A0D9SG42 100 aa6.78□□□□□ -1.32
TMEM39A-203ENST00000461654 SPRR2GQ9BYE4 73 aa6.78□□□□□ -1.32
TMEM39A-203ENST00000461654 CDC42SE1Q9NRR8 79 aa6.77□□□□□ -1.33
TMEM39A-203ENST00000461654 BRK1Q8WUW1 75 aa6.75□□□□□ -1.33
TMEM39A-203ENST00000461654 A8MU10 97 aa6.74□□□□□ -1.33
TMEM39A-203ENST00000461654 MACF1Q9UPN3 7388 aaKnown RBP6.74□□□□□ -1.33
TMEM39A-203ENST00000461654 K7ERS5 55 aa6.68□□□□□ -1.34
TMEM39A-203ENST00000461654 SYNE2Q8WXH0 6885 aaKnown RBP6.68□□□□□ -1.34
TMEM39A-203ENST00000461654 A6NN06 94 aa6.67□□□□□ -1.34
TMEM39A-203ENST00000461654 SPINT4Q6UDR6 99 aa6.66□□□□□ -1.34
TMEM39A-203ENST00000461654 PLAC4Q8WY50 150 aa6.63□□□□□ -1.35
TMEM39A-203ENST00000461654 KRTAP19-8Q3LI54 63 aa6.62□□□□□ -1.35
TMEM39A-203ENST00000461654 KRTAP12-1P59990 96 aa6.61□□□□□ -1.35
TMEM39A-203ENST00000461654 KRTAP12-2P59991 146 aa6.57□□□□□ -1.36
TMEM39A-203ENST00000461654 MT1BP07438 61 aa6.55□□□□□ -1.36
TMEM39A-203ENST00000461654 KRTAP6-3Q3LI67 103 aa6.53□□□□□ -1.36
TMEM39A-203ENST00000461654 CAMK2N1Q7Z7J9 78 aa6.53□□□□□ -1.36
TMEM39A-203ENST00000461654 PRO0628Q9UI54 55 aa6.51□□□□□ -1.37
TMEM39A-203ENST00000461654 KRTAP10-5P60370 271 aa6.41□□□□□ -1.38
TMEM39A-203ENST00000461654 PMAIP1Q13794 54 aa6.39□□□□□ -1.39
TMEM39A-203ENST00000461654 PRO2289Q9P1D8 64 aa6.36□□□□□ -1.39
TMEM39A-203ENST00000461654 ROMO1P60602 79 aa6.3□□□□□ -1.4
TMEM39A-203ENST00000461654 NEBP20929 6669 aa6.29□□□□□ -1.4
TMEM39A-203ENST00000461654 MT1XP80297 61 aa6.27□□□□□ -1.41
TMEM39A-203ENST00000461654 LOC100996750A0A140TA64 210 aa6.25□□□□□ -1.41
TMEM39A-203ENST00000461654 KRTAP4-6Q9BYQ5 205 aa6.25□□□□□ -1.41
TMEM39A-203ENST00000461654 C10orf95Q9H7T3 257 aa6.24□□□□□ -1.41
TMEM39A-203ENST00000461654 KRTAP5-9P26371 169 aa6.23□□□□□ -1.41
TMEM39A-203ENST00000461654 TNP1P09430 55 aa6.18□□□□□ -1.42
TMEM39A-203ENST00000461654 MUC12Q9UKN1 5478 aa6.14□□□□□ -1.43
TMEM39A-203ENST00000461654 KRTAP25-1Q3LHN0 102 aa6.14□□□□□ -1.43
TMEM39A-203ENST00000461654 KTN1-AS1Q86SY8 53 aa6.06□□□□□ -1.44
TMEM39A-203ENST00000461654 KMT2DO14686 5537 aa6.05□□□□□ -1.44
TMEM39A-203ENST00000461654 KRTAP20-1Q3LI63 56 aa6.02□□□□□ -1.45
TMEM39A-203ENST00000461654 KRTAP10-7P60409 375 aaPredicted RBP6□□□□□ -1.45
TMEM39A-203ENST00000461654 KRTAP10-12P60413 245 aa5.97□□□□□ -1.45
TMEM39A-203ENST00000461654 SPRR2FQ96RM1 72 aa5.96□□□□□ -1.46
TMEM39A-203ENST00000461654 MDN1Q9NU22 5596 aa5.94□□□□□ -1.46
TMEM39A-203ENST00000461654 KRTAP8-1Q8IUC2 63 aa5.94□□□□□ -1.46
TMEM39A-203ENST00000461654 PRAC1Q96KF2 57 aa5.93□□□□□ -1.46
TMEM39A-203ENST00000461654 KRTAP23-1A1A580 65 aa5.92□□□□□ -1.46
TMEM39A-203ENST00000461654 PP632Q6XCG6 107 aa5.92□□□□□ -1.46
TMEM39A-203ENST00000461654 KRTAP2-3P0C7H8 128 aa5.9□□□□□ -1.46
TMEM39A-203ENST00000461654 KRTAP2-4Q9BYR9 128 aa5.9□□□□□ -1.46
TMEM39A-203ENST00000461654 SPRR2EP22531 72 aa5.89□□□□□ -1.47
TMEM39A-203ENST00000461654 SPRR2BP35325 72 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms