RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 LOC101927531A0A1B0GV80 90 aa5.36□□□□□ -1.55
UBR4-208ENST00000459947 TRAV22A0A0B4J277 110 aa5.36□□□□□ -1.55
UBR4-208ENST00000459947 A0A0A0MQY5 61 aa5.33□□□□□ -1.56
UBR4-208ENST00000459947 H1FX-AS1Q4G0G2 97 aa5.33□□□□□ -1.56
UBR4-208ENST00000459947 KRTAP10-6P60371 365 aaPredicted RBP5.33□□□□□ -1.56
UBR4-208ENST00000459947 A8MUN3 132 aa5.31□□□□□ -1.56
UBR4-208ENST00000459947 H3BPC8 53 aa5.3□□□□□ -1.56
UBR4-208ENST00000459947 CYSTM1Q9H1C7 97 aa5.3□□□□□ -1.56
UBR4-208ENST00000459947 LORP23490 312 aaPredicted RBP5.3□□□□□ -1.56
UBR4-208ENST00000459947 H0Y9P7 68 aa5.29□□□□□ -1.56
UBR4-208ENST00000459947 LCE2DQ5TA82 110 aaPredicted RBP5.28□□□□□ -1.56
UBR4-208ENST00000459947 H7BZZ5 65 aa5.27□□□□□ -1.57
UBR4-208ENST00000459947 CYP4F30PQ9H0H9 118 aa5.27□□□□□ -1.57
UBR4-208ENST00000459947 MUC2Q02817 5179 aa5.27□□□□□ -1.57
UBR4-208ENST00000459947 FLGP20930 4061 aaPredicted RBP5.25□□□□□ -1.57
UBR4-208ENST00000459947 LINC01554Q52M75 96 aa5.25□□□□□ -1.57
UBR4-208ENST00000459947 C1orf64Q8NEQ6 169 aa5.24□□□□□ -1.57
UBR4-208ENST00000459947 OCR1Q9BZK8 76 aa5.24□□□□□ -1.57
UBR4-208ENST00000459947 KRTAP9-2Q9BYQ4 174 aa5.22□□□□□ -1.57
UBR4-208ENST00000459947 LINC00208Q96KT6 92 aa5.2□□□□□ -1.58
UBR4-208ENST00000459947 KLKP1Q107X0 134 aa5.2□□□□□ -1.58
UBR4-208ENST00000459947 S4R3F8 94 aa5.2□□□□□ -1.58
UBR4-208ENST00000459947 PRAC1Q96KF2 57 aa5.16□□□□□ -1.58
UBR4-208ENST00000459947 CSAG1Q6PB30 78 aa5.16□□□□□ -1.58
UBR4-208ENST00000459947 KRTAP9-8Q9BYQ0 159 aa5.15□□□□□ -1.58
UBR4-208ENST00000459947 MT2AP02795 61 aa5.13□□□□□ -1.59
UBR4-208ENST00000459947 KRTAP10-10P60014 251 aa5.12□□□□□ -1.59
UBR4-208ENST00000459947 KRTAP3-1Q9BYR8 98 aa5.11□□□□□ -1.59
UBR4-208ENST00000459947 K7ERS5 55 aa5.1□□□□□ -1.59
UBR4-208ENST00000459947 Q1T7F1 81 aa5.08□□□□□ -1.6
UBR4-208ENST00000459947 MT1FP04733 61 aa5.06□□□□□ -1.6
UBR4-208ENST00000459947 CDC42SE1Q9NRR8 79 aa5.05□□□□□ -1.6
UBR4-208ENST00000459947 SPINT4Q6UDR6 99 aa5.04□□□□□ -1.6
UBR4-208ENST00000459947 DMAC1Q96GE9 116 aa5.04□□□□□ -1.6
UBR4-208ENST00000459947 KRTAP9-6A0A140TA67 174 aa5.02□□□□□ -1.61
UBR4-208ENST00000459947 H0YAA0 97 aa5.01□□□□□ -1.61
UBR4-208ENST00000459947 KRTAP9-3Q9BYQ3 159 aa5□□□□□ -1.61
UBR4-208ENST00000459947 CRIPTQ9P021 101 aa5□□□□□ -1.61
UBR4-208ENST00000459947 ACYP2P14621 99 aa5□□□□□ -1.61
UBR4-208ENST00000459947 CRCT1Q9UGL9 99 aa5□□□□□ -1.61
UBR4-208ENST00000459947 SPANXA2-OT1Q8N9U9 137 aa4.99□□□□□ -1.61
UBR4-208ENST00000459947 Q5VV11 94 aa4.98□□□□□ -1.61
UBR4-208ENST00000459947 KRTAP3-3Q9BYR6 98 aa4.97□□□□□ -1.61
UBR4-208ENST00000459947 A8MU10 97 aa4.97□□□□□ -1.61
UBR4-208ENST00000459947 MIR22HGQ0VDD5 57 aa4.95□□□□□ -1.62
UBR4-208ENST00000459947 A6NN06 94 aa4.92□□□□□ -1.62
UBR4-208ENST00000459947 COA5Q86WW8 74 aa4.92□□□□□ -1.62
UBR4-208ENST00000459947 LUZP6Q538Z0 58 aa4.91□□□□□ -1.62
UBR4-208ENST00000459947 A0A1B0GU69 56 aa4.9□□□□□ -1.63
UBR4-208ENST00000459947 LCE2BO14633 110 aa4.88□□□□□ -1.63
UBR4-208ENST00000459947 ADM2Q7Z4H4 148 aa4.87□□□□□ -1.63
UBR4-208ENST00000459947 SPRR2GQ9BYE4 73 aa4.87□□□□□ -1.63
UBR4-208ENST00000459947 UQCR11O14957 56 aa4.82□□□□□ -1.64
UBR4-208ENST00000459947 KRTAP19-8Q3LI54 63 aa4.82□□□□□ -1.64
UBR4-208ENST00000459947 KRTAP19-1Q8IUB9 90 aa4.81□□□□□ -1.64
UBR4-208ENST00000459947 KRTAP19-6Q3LI70 58 aa4.8□□□□□ -1.64
UBR4-208ENST00000459947 R4GN34 69 aa4.76□□□□□ -1.65
UBR4-208ENST00000459947 NDUFAF8A1L188 74 aa4.76□□□□□ -1.65
UBR4-208ENST00000459947 ROMO1P60602 79 aa4.76□□□□□ -1.65
UBR4-208ENST00000459947 LINC01558Q9Y6Z2 57 aa4.74□□□□□ -1.65
UBR4-208ENST00000459947 M0QZ58 72 aa4.72□□□□□ -1.65
UBR4-208ENST00000459947 MT1BP07438 61 aa4.71□□□□□ -1.66
UBR4-208ENST00000459947 KRTAP3-2Q9BYR7 98 aa4.7□□□□□ -1.66
UBR4-208ENST00000459947 USH2AO75445 5202 aa4.7□□□□□ -1.66
UBR4-208ENST00000459947 P0C880 135 aa4.7□□□□□ -1.66
UBR4-208ENST00000459947 PLAC4Q8WY50 150 aa4.7□□□□□ -1.66
UBR4-208ENST00000459947 PRO2289Q9P1D8 64 aa4.65□□□□□ -1.66
UBR4-208ENST00000459947 KRTAP10-5P60370 271 aa4.63□□□□□ -1.67
UBR4-208ENST00000459947 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.62□□□□□ -1.67
UBR4-208ENST00000459947 KRTAP25-1Q3LHN0 102 aa4.59□□□□□ -1.67
UBR4-208ENST00000459947 SSPOA2VEC9 5147 aa4.58□□□□□ -1.68
UBR4-208ENST00000459947 FSIP2Q5CZC0 6907 aa4.54□□□□□ -1.68
UBR4-208ENST00000459947 A0A1B0GU33 70 aa4.53□□□□□ -1.68
UBR4-208ENST00000459947 KRTAP9-7A8MTY7 169 aa4.52□□□□□ -1.69
UBR4-208ENST00000459947 FCGBPQ9Y6R7 5405 aaPredicted RBP4.51□□□□□ -1.69
UBR4-208ENST00000459947 SPATA8Q6RVD6 105 aa4.49□□□□□ -1.69
UBR4-208ENST00000459947 CAMK2N1Q7Z7J9 78 aa4.47□□□□□ -1.69
UBR4-208ENST00000459947 KRTAP6-3Q3LI67 103 aa4.47□□□□□ -1.69
UBR4-208ENST00000459947 MT1XP80297 61 aa4.46□□□□□ -1.7
UBR4-208ENST00000459947 KRTAP12-2P59991 146 aa4.44□□□□□ -1.7
UBR4-208ENST00000459947 KRTAP13-4Q3LI77 160 aa4.43□□□□□ -1.7
UBR4-208ENST00000459947 A0A0D9SG42 100 aa4.37□□□□□ -1.71
UBR4-208ENST00000459947 KRTAP12-1P59990 96 aa4.31□□□□□ -1.72
UBR4-208ENST00000459947 KRTAP5-9P26371 169 aa4.3□□□□□ -1.72
UBR4-208ENST00000459947 KRTAP10-12P60413 245 aa4.29□□□□□ -1.72
UBR4-208ENST00000459947 KRTAP8-1Q8IUC2 63 aa4.28□□□□□ -1.72
UBR4-208ENST00000459947 MACF1Q9UPN3 7388 aaKnown RBP4.25□□□□□ -1.73
UBR4-208ENST00000459947 KRTAP10-7P60409 375 aaPredicted RBP4.21□□□□□ -1.73
UBR4-208ENST00000459947 SPRR2FQ96RM1 72 aa4.19□□□□□ -1.74
UBR4-208ENST00000459947 C10orf95Q9H7T3 257 aa4.18□□□□□ -1.74
UBR4-208ENST00000459947 TNP1P09430 55 aa4.17□□□□□ -1.74
UBR4-208ENST00000459947 SYNE2Q8WXH0 6885 aaKnown RBP4.11□□□□□ -1.75
UBR4-208ENST00000459947 KRTAP4-8A0A0G2JLE6 195 aa4.11□□□□□ -1.75
UBR4-208ENST00000459947 SPRR2EP22531 72 aa4.11□□□□□ -1.75
UBR4-208ENST00000459947 SPRR2BP35325 72 aa4.11□□□□□ -1.75
UBR4-208ENST00000459947 SPRR2AP35326 72 aa4.11□□□□□ -1.75
UBR4-208ENST00000459947 KRTAP4-8Q9BYQ9 185 aa4.11□□□□□ -1.75
UBR4-208ENST00000459947 NEBP20929 6669 aa4.08□□□□□ -1.76
UBR4-208ENST00000459947 LCE1AQ5T7P2 110 aa4.07□□□□□ -1.76
UBR4-208ENST00000459947 KRTAP20-1Q3LI63 56 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms