RNA–Protein interactions for RNA: ENST00000455554.2

LINC02540-201, Transcript of long intergenic non-protein coding RNA 2540, humanhuman

TSL 3 BASIC

Gene LINC02540, Length 570 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC02540-201ENST00000455554 LOC400499M0QZD8 3231 aa0.81□□□□□ -2.28
LINC02540-201ENST00000455554 M0QZ58 72 aa0.81□□□□□ -2.28
LINC02540-201ENST00000455554 DEFB135Q30KP9 77 aa0.81□□□□□ -2.28
LINC02540-201ENST00000455554 Q5VSD8 79 aa0.81□□□□□ -2.28
LINC02540-201ENST00000455554 PIEZO1Q92508 2521 aa0.81□□□□□ -2.28
LINC02540-201ENST00000455554 VPS13DQ5THJ4 4388 aa0.81□□□□□ -2.28
LINC02540-201ENST00000455554 BSNQ9UPA5 3926 aa0.81□□□□□ -2.28
LINC02540-201ENST00000455554 BRCA2P51587 3418 aa0.8□□□□□ -2.28
LINC02540-201ENST00000455554 GCN1Q92616 2671 aaKnown RBP0.8□□□□□ -2.28
LINC02540-201ENST00000455554 DNAH11Q96DT5 4516 aa0.8□□□□□ -2.28
LINC02540-201ENST00000455554 NBEAL1Q6ZS30 2694 aa0.8□□□□□ -2.28
LINC02540-201ENST00000455554 HIVEP1P15822 2718 aa0.8□□□□□ -2.28
LINC02540-201ENST00000455554 TGP01266 2768 aa0.79□□□□□ -2.28
LINC02540-201ENST00000455554 PDZD2O15018 2839 aa0.79□□□□□ -2.28
LINC02540-201ENST00000455554 NIPBLQ6KC79 2804 aaeCLIP0.79□□□□□ -2.28
LINC02540-201ENST00000455554 TRRAPQ9Y4A5 3859 aa0.79□□□□□ -2.28
LINC02540-201ENST00000455554 RELNP78509 3460 aa0.79□□□□□ -2.28
LINC02540-201ENST00000455554 ADGRG4Q8IZF6 3080 aa0.79□□□□□ -2.28
LINC02540-201ENST00000455554 FRAS1Q86XX4 4008 aa0.79□□□□□ -2.28
LINC02540-201ENST00000455554 FASNP49327 2511 aaKnown RBP0.79□□□□□ -2.28
LINC02540-201ENST00000455554 ATRQ13535 2644 aa0.79□□□□□ -2.28
LINC02540-201ENST00000455554 USP24Q9UPU5 2620 aa0.79□□□□□ -2.28
LINC02540-201ENST00000455554 ZNF292O60281 2723 aa0.79□□□□□ -2.28
LINC02540-201ENST00000455554 MXRA5Q9NR99 2828 aa0.79□□□□□ -2.28
LINC02540-201ENST00000455554 STAB2Q8WWQ8 2551 aa0.78□□□□□ -2.28
LINC02540-201ENST00000455554 ITPR2Q14571 2701 aa0.78□□□□□ -2.28
LINC02540-201ENST00000455554 J3QKU1 62 aa0.78□□□□□ -2.28
LINC02540-201ENST00000455554 ACACBO00763 2458 aa0.78□□□□□ -2.28
LINC02540-201ENST00000455554 HRNRQ86YZ3 2850 aaPredicted RBP0.78□□□□□ -2.29
LINC02540-201ENST00000455554 ITPR3Q14573 2671 aa0.77□□□□□ -2.29
LINC02540-201ENST00000455554 VPS13CQ709C8 3753 aa0.77□□□□□ -2.29
LINC02540-201ENST00000455554 CEP295Q9C0D2 2601 aa0.77□□□□□ -2.29
LINC02540-201ENST00000455554 COL7A1Q02388 2944 aa0.77□□□□□ -2.29
LINC02540-201ENST00000455554 LYSTQ99698 3801 aa0.77□□□□□ -2.29
LINC02540-201ENST00000455554 ANK2Q01484 3957 aa0.76□□□□□ -2.29
LINC02540-201ENST00000455554 MYO15AQ9UKN7 3530 aa0.76□□□□□ -2.29
LINC02540-201ENST00000455554 CSMD3Q7Z407 3707 aa0.76□□□□□ -2.29
LINC02540-201ENST00000455554 FLNCQ14315 2725 aa0.76□□□□□ -2.29
LINC02540-201ENST00000455554 TEP1Q99973 2627 aaKnown RBP0.76□□□□□ -2.29
LINC02540-201ENST00000455554 MUC3AQ02505 3323 aa0.76□□□□□ -2.29
LINC02540-201ENST00000455554 DNAH3Q8TD57 4116 aa0.75□□□□□ -2.29
LINC02540-201ENST00000455554 CMYA5Q8N3K9 4069 aa0.75□□□□□ -2.29
LINC02540-201ENST00000455554 MYO18BQ8IUG5 2567 aa0.75□□□□□ -2.29
LINC02540-201ENST00000455554 SVEP1Q4LDE5 3571 aa0.75□□□□□ -2.29
LINC02540-201ENST00000455554 DNAH1Q9P2D7 4330 aa0.75□□□□□ -2.29
LINC02540-201ENST00000455554 TENM4Q6N022 2769 aa0.74□□□□□ -2.29
LINC02540-201ENST00000455554 NOTCH1P46531 2555 aa0.74□□□□□ -2.29
LINC02540-201ENST00000455554 DNAH8Q96JB1 4490 aa0.74□□□□□ -2.29
LINC02540-201ENST00000455554 ZANQ9Y493 2812 aa0.74□□□□□ -2.29
LINC02540-201ENST00000455554 EYSQ5T1H1 3165 aa0.74□□□□□ -2.29
LINC02540-201ENST00000455554 STAB1Q9NY15 2570 aa0.74□□□□□ -2.29
LINC02540-201ENST00000455554 ANKRD11Q6UB99 2663 aaPredicted RBP0.73□□□□□ -2.29
LINC02540-201ENST00000455554 CSMD2Q7Z408 3487 aa0.73□□□□□ -2.29
LINC02540-201ENST00000455554 FBN2P35556 2912 aa0.73□□□□□ -2.29
LINC02540-201ENST00000455554 DNAH2Q9P225 4427 aa0.73□□□□□ -2.29
LINC02540-201ENST00000455554 RPS29P62273 56 aaKnown RBP0.73□□□□□ -2.29
LINC02540-201ENST00000455554 MYCBP2O75592 4640 aa0.73□□□□□ -2.29
LINC02540-201ENST00000455554 CUBNO60494 3623 aa0.72□□□□□ -2.29
LINC02540-201ENST00000455554 DNAH6Q9C0G6 4158 aa0.72□□□□□ -2.29
LINC02540-201ENST00000455554 TNP1P09430 55 aa0.72□□□□□ -2.29
LINC02540-201ENST00000455554 SMR3AQ99954 134 aa0.72□□□□□ -2.29
LINC02540-201ENST00000455554 ANK3Q12955 4377 aaKnown RBP0.72□□□□□ -2.29
LINC02540-201ENST00000455554 PKD1L1Q8TDX9 2849 aa0.72□□□□□ -2.29
LINC02540-201ENST00000455554 DNAH7Q8WXX0 4024 aa0.72□□□□□ -2.29
LINC02540-201ENST00000455554 DNAH9Q9NYC9 4486 aa0.72□□□□□ -2.29
LINC02540-201ENST00000455554 IGSF10Q6WRI0 2623 aa0.71□□□□□ -2.3
LINC02540-201ENST00000455554 DNAH17Q9UFH2 4485 aa0.71□□□□□ -2.3
LINC02540-201ENST00000455554 MGAM2Q2M2H8 2515 aa0.71□□□□□ -2.3
LINC02540-201ENST00000455554 AHNAK2Q8IVF2 5795 aa0.71□□□□□ -2.3
LINC02540-201ENST00000455554 C9orf92A6NGG3 77 aa0.71□□□□□ -2.3
LINC02540-201ENST00000455554 KRTAP5-10Q6L8G5 202 aa0.71□□□□□ -2.3
LINC02540-201ENST00000455554 FLNAP21333 2647 aaKnown RBP0.71□□□□□ -2.3
LINC02540-201ENST00000455554 HECTD4Q9Y4D8 3996 aa0.71□□□□□ -2.3
LINC02540-201ENST00000455554 VPS13BQ7Z7G8 4022 aa0.71□□□□□ -2.3
LINC02540-201ENST00000455554 KMT2AQ03164 3969 aa0.71□□□□□ -2.3
LINC02540-201ENST00000455554 NSD1Q96L73 2696 aaPredicted RBP0.71□□□□□ -2.3
LINC02540-201ENST00000455554 DYNC2H1Q8NCM8 4307 aaKnown RBP0.7□□□□□ -2.3
LINC02540-201ENST00000455554 MAST4O15021 2626 aa0.7□□□□□ -2.3
LINC02540-201ENST00000455554 FLNBO75369 2602 aaKnown RBP0.7□□□□□ -2.3
LINC02540-201ENST00000455554 DNAH10Q8IVF4 4471 aa0.7□□□□□ -2.3
LINC02540-201ENST00000455554 TENM3Q9P273 2699 aa0.7□□□□□ -2.3
LINC02540-201ENST00000455554 KRTAP21-3Q3LHN1 58 aa0.7□□□□□ -2.3
LINC02540-201ENST00000455554 ZNF469Q96JG9 3925 aaPredicted RBP0.7□□□□□ -2.3
LINC02540-201ENST00000455554 MUC16Q8WXI7 14507 aa0.7□□□□□ -2.3
LINC02540-201ENST00000455554 HUWE1Q7Z6Z7 4374 aaKnown RBP0.69□□□□□ -2.3
LINC02540-201ENST00000455554 SACSQ9NZJ4 4579 aa0.69□□□□□ -2.3
LINC02540-201ENST00000455554 APOBP04114 4563 aaKnown RBP0.68□□□□□ -2.3
LINC02540-201ENST00000455554 PRKDCP78527 4128 aaKnown RBP0.68□□□□□ -2.3
LINC02540-201ENST00000455554 FLGP20930 4061 aaPredicted RBP0.68□□□□□ -2.3
LINC02540-201ENST00000455554 PKD1P98161 4303 aa0.67□□□□□ -2.3
LINC02540-201ENST00000455554 PKHD1L1Q86WI1 4243 aa0.66□□□□□ -2.3
LINC02540-201ENST00000455554 HSPG2P98160 4391 aa0.66□□□□□ -2.3
LINC02540-201ENST00000455554 FAT3Q8TDW7 4589 aa0.65□□□□□ -2.31
LINC02540-201ENST00000455554 KRTAP2-3P0C7H8 128 aa0.65□□□□□ -2.31
LINC02540-201ENST00000455554 KRTAP8-1Q8IUC2 63 aa0.65□□□□□ -2.31
LINC02540-201ENST00000455554 KRTAP2-4Q9BYR9 128 aa0.65□□□□□ -2.31
LINC02540-201ENST00000455554 KRTAP2-1Q9BYU5 128 aa0.65□□□□□ -2.31
LINC02540-201ENST00000455554 KRTAP10-4P60372 401 aaPredicted RBP0.64□□□□□ -2.31
LINC02540-201ENST00000455554 LRP1Q07954 4544 aaKnown RBP0.64□□□□□ -2.31
LINC02540-201ENST00000455554 PLECQ15149 4684 aaKnown RBP0.64□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms