RNA–Protein interactions for RNA: ENST00000439717.2

HSPG2-206, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 2

Gene HSPG2, Length 637 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-206ENST00000439717 FAM236BA0A1B0GV22 79 aa5.52□□□□□ -1.53
HSPG2-206ENST00000439717 LCE2BO14633 110 aa5.51□□□□□ -1.53
HSPG2-206ENST00000439717 KRTAP3-3Q9BYR6 98 aa5.51□□□□□ -1.53
HSPG2-206ENST00000439717 TRAV7A0A075B6U4 112 aa5.5□□□□□ -1.53
HSPG2-206ENST00000439717 USH2AO75445 5202 aa5.47□□□□□ -1.53
HSPG2-206ENST00000439717 NDUFC1O43677 76 aa5.46□□□□□ -1.54
HSPG2-206ENST00000439717 DMAC1Q96GE9 116 aa5.42□□□□□ -1.54
HSPG2-206ENST00000439717 H0YAA0 97 aa5.39□□□□□ -1.55
HSPG2-206ENST00000439717 SERP2Q8N6R1 65 aa5.37□□□□□ -1.55
HSPG2-206ENST00000439717 KRTAP19-1Q8IUB9 90 aa5.36□□□□□ -1.55
HSPG2-206ENST00000439717 SSPOA2VEC9 5147 aa5.36□□□□□ -1.55
HSPG2-206ENST00000439717 CRIPTQ9P021 101 aa5.35□□□□□ -1.55
HSPG2-206ENST00000439717 SPRR2GQ9BYE4 73 aa5.34□□□□□ -1.55
HSPG2-206ENST00000439717 SNURFQ9Y675 71 aa5.34□□□□□ -1.55
HSPG2-206ENST00000439717 ACYP2P14621 99 aa5.33□□□□□ -1.56
HSPG2-206ENST00000439717 KRTAP19-6Q3LI70 58 aa5.31□□□□□ -1.56
HSPG2-206ENST00000439717 C20orf197Q8N268 126 aa5.31□□□□□ -1.56
HSPG2-206ENST00000439717 ADM2Q7Z4H4 148 aa5.3□□□□□ -1.56
HSPG2-206ENST00000439717 SPANXA2-OT1Q8N9U9 137 aa5.29□□□□□ -1.56
HSPG2-206ENST00000439717 KRTAP19-8Q3LI54 63 aa5.28□□□□□ -1.56
HSPG2-206ENST00000439717 Q5VV11 94 aa5.27□□□□□ -1.57
HSPG2-206ENST00000439717 FCGBPQ9Y6R7 5405 aaPredicted RBP5.26□□□□□ -1.57
HSPG2-206ENST00000439717 COX7CP15954 63 aa5.25□□□□□ -1.57
HSPG2-206ENST00000439717 SPTSSBQ8NFR3 76 aa5.25□□□□□ -1.57
HSPG2-206ENST00000439717 MT1BP07438 61 aa5.24□□□□□ -1.57
HSPG2-206ENST00000439717 CHKB-CPT1BH3BT56 60 aa5.22□□□□□ -1.57
HSPG2-206ENST00000439717 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.2□□□□□ -1.58
HSPG2-206ENST00000439717 P0C880 135 aa5.19□□□□□ -1.58
HSPG2-206ENST00000439717 KRTAP3-2Q9BYR7 98 aa5.18□□□□□ -1.58
HSPG2-206ENST00000439717 R4GN34 69 aa5.16□□□□□ -1.58
HSPG2-206ENST00000439717 ANAPC13Q9BS18 74 aa5.14□□□□□ -1.59
HSPG2-206ENST00000439717 A6NN06 94 aa5.13□□□□□ -1.59
HSPG2-206ENST00000439717 H7BZZ5 65 aa5.12□□□□□ -1.59
HSPG2-206ENST00000439717 MACF1Q9UPN3 7388 aaKnown RBP5.11□□□□□ -1.59
HSPG2-206ENST00000439717 M0QZ58 72 aa5.11□□□□□ -1.59
HSPG2-206ENST00000439717 KRTAP10-5P60370 271 aa5.1□□□□□ -1.59
HSPG2-206ENST00000439717 COA5Q86WW8 74 aa5.1□□□□□ -1.59
HSPG2-206ENST00000439717 CYSTM1Q9H1C7 97 aa5.1□□□□□ -1.59
HSPG2-206ENST00000439717 KRTAP9-7A8MTY7 169 aa5.08□□□□□ -1.6
HSPG2-206ENST00000439717 PLAC4Q8WY50 150 aa5.06□□□□□ -1.6
HSPG2-206ENST00000439717 SYNE2Q8WXH0 6885 aaKnown RBP5.05□□□□□ -1.6
HSPG2-206ENST00000439717 CCDC179H3BU77 68 aa5.02□□□□□ -1.61
HSPG2-206ENST00000439717 LINC01554Q52M75 96 aa5.02□□□□□ -1.61
HSPG2-206ENST00000439717 PRO2289Q9P1D8 64 aa5□□□□□ -1.61
HSPG2-206ENST00000439717 SEC61GP60059 68 aa4.98□□□□□ -1.61
HSPG2-206ENST00000439717 ATP5EP56381 51 aaPredicted RBP4.96□□□□□ -1.62
HSPG2-206ENST00000439717 SERP1Q9Y6X1 66 aa4.96□□□□□ -1.62
HSPG2-206ENST00000439717 MT1XP80297 61 aa4.95□□□□□ -1.62
HSPG2-206ENST00000439717 KRTAP6-3Q3LI67 103 aa4.94□□□□□ -1.62
HSPG2-206ENST00000439717 KRTAP13-4Q3LI77 160 aa4.9□□□□□ -1.63
HSPG2-206ENST00000439717 TMEM258P61165 79 aa4.87□□□□□ -1.63
HSPG2-206ENST00000439717 A0A1B0GU33 70 aa4.86□□□□□ -1.63
HSPG2-206ENST00000439717 A0A1B0GU69 56 aa4.84□□□□□ -1.63
HSPG2-206ENST00000439717 KRTAP12-2P59991 146 aa4.84□□□□□ -1.63
HSPG2-206ENST00000439717 SPATA8Q6RVD6 105 aa4.8□□□□□ -1.64
HSPG2-206ENST00000439717 A0A0D9SG42 100 aa4.78□□□□□ -1.64
HSPG2-206ENST00000439717 KRTAP5-9P26371 169 aa4.78□□□□□ -1.64
HSPG2-206ENST00000439717 CAMK2N1Q7Z7J9 78 aa4.77□□□□□ -1.65
HSPG2-206ENST00000439717 PRR15LQ9BU68 103 aa4.77□□□□□ -1.65
HSPG2-206ENST00000439717 NEBP20929 6669 aa4.75□□□□□ -1.65
HSPG2-206ENST00000439717 LINC01558Q9Y6Z2 57 aa4.75□□□□□ -1.65
HSPG2-206ENST00000439717 SMIM26A0A096LP01 95 aa4.74□□□□□ -1.65
HSPG2-206ENST00000439717 KRTAP10-12P60413 245 aa4.73□□□□□ -1.65
HSPG2-206ENST00000439717 KRTAP10-7P60409 375 aaPredicted RBP4.72□□□□□ -1.65
HSPG2-206ENST00000439717 KMT2DO14686 5537 aa4.71□□□□□ -1.66
HSPG2-206ENST00000439717 SPINT4Q6UDR6 99 aa4.71□□□□□ -1.66
HSPG2-206ENST00000439717 KRTAP8-1Q8IUC2 63 aa4.71□□□□□ -1.66
HSPG2-206ENST00000439717 KRTAP12-1P59990 96 aa4.7□□□□□ -1.66
HSPG2-206ENST00000439717 MUC12Q9UKN1 5478 aa4.68□□□□□ -1.66
HSPG2-206ENST00000439717 KRTAP4-8A0A0G2JLE6 195 aa4.66□□□□□ -1.66
HSPG2-206ENST00000439717 SPRR2FQ96RM1 72 aa4.66□□□□□ -1.66
HSPG2-206ENST00000439717 KRTAP4-8Q9BYQ9 185 aa4.66□□□□□ -1.66
HSPG2-206ENST00000439717 A8MU10 97 aa4.65□□□□□ -1.67
HSPG2-206ENST00000439717 MDN1Q9NU22 5596 aa4.62□□□□□ -1.67
HSPG2-206ENST00000439717 UQCR11O14957 56 aa4.61□□□□□ -1.67
HSPG2-206ENST00000439717 V9GYY9 64 aa4.6□□□□□ -1.67
HSPG2-206ENST00000439717 SPRR2EP22531 72 aa4.56□□□□□ -1.68
HSPG2-206ENST00000439717 SPRR2BP35325 72 aa4.56□□□□□ -1.68
HSPG2-206ENST00000439717 SPRR2AP35326 72 aa4.56□□□□□ -1.68
HSPG2-206ENST00000439717 Q1T7F1 81 aa4.56□□□□□ -1.68
HSPG2-206ENST00000439717 PCP4P48539 62 aa4.55□□□□□ -1.68
HSPG2-206ENST00000439717 LCE1AQ5T7P2 110 aa4.52□□□□□ -1.69
HSPG2-206ENST00000439717 MIR22HGQ0VDD5 57 aa4.51□□□□□ -1.69
HSPG2-206ENST00000439717 PSPHP1O15172 72 aa4.5□□□□□ -1.69
HSPG2-206ENST00000439717 RPS28P62857 69 aaKnown RBP4.49□□□□□ -1.69
HSPG2-206ENST00000439717 KRTAP20-1Q3LI63 56 aa4.48□□□□□ -1.69
HSPG2-206ENST00000439717 C10orf95Q9H7T3 257 aa4.47□□□□□ -1.69
HSPG2-206ENST00000439717 TNP1P09430 55 aa4.45□□□□□ -1.7
HSPG2-206ENST00000439717 KRTAP19-7Q3SYF9 63 aa4.43□□□□□ -1.7
HSPG2-206ENST00000439717 K7ERS5 55 aa4.42□□□□□ -1.7
HSPG2-206ENST00000439717 KRTAP2-3P0C7H8 128 aa4.42□□□□□ -1.7
HSPG2-206ENST00000439717 KRTAP2-4Q9BYR9 128 aa4.42□□□□□ -1.7
HSPG2-206ENST00000439717 SPRR2DP22532 72 aa4.41□□□□□ -1.7
HSPG2-206ENST00000439717 MT1EP04732 61 aa4.39□□□□□ -1.71
HSPG2-206ENST00000439717 A6NED7 52 aa4.37□□□□□ -1.71
HSPG2-206ENST00000439717 KRTAP19-5Q3LI72 72 aa4.36□□□□□ -1.71
HSPG2-206ENST00000439717 LCE3AQ5TA76 89 aa4.34□□□□□ -1.71
HSPG2-206ENST00000439717 KRTAP19-3Q7Z4W3 81 aa4.32□□□□□ -1.72
HSPG2-206ENST00000439717 LCE5AQ5TCM9 118 aa4.31□□□□□ -1.72
HSPG2-206ENST00000439717 KRTAP25-1Q3LHN0 102 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms