RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 ACYP2P14621 99 aa5.23□□□□□ -1.57
CUX1-206ENST00000437600 A0A1B0GU69 56 aa5.22□□□□□ -1.57
CUX1-206ENST00000437600 HERC1Q15751 4861 aa5.19□□□□□ -1.58
CUX1-206ENST00000437600 MIR22HGQ0VDD5 57 aa5.19□□□□□ -1.58
CUX1-206ENST00000437600 DMAC1Q96GE9 116 aa5.18□□□□□ -1.58
CUX1-206ENST00000437600 SPATA8Q6RVD6 105 aa5.17□□□□□ -1.58
CUX1-206ENST00000437600 P0C880 135 aa5.17□□□□□ -1.58
CUX1-206ENST00000437600 LPAP08519 4548 aa5.15□□□□□ -1.58
CUX1-206ENST00000437600 UQCR11O14957 56 aa5.15□□□□□ -1.59
CUX1-206ENST00000437600 MT1HL1P0DM35 61 aa5.13□□□□□ -1.59
CUX1-206ENST00000437600 KRTAP10-8P60410 259 aa5.13□□□□□ -1.59
CUX1-206ENST00000437600 RPS29P62273 56 aaKnown RBP5.11□□□□□ -1.59
CUX1-206ENST00000437600 LRP2P98164 4655 aa5.09□□□□□ -1.59
CUX1-206ENST00000437600 KRTAP25-1Q3LHN0 102 aa5.07□□□□□ -1.6
CUX1-206ENST00000437600 KRTAP3-1Q9BYR8 98 aa5.06□□□□□ -1.6
CUX1-206ENST00000437600 J3QL48 77 aa5.04□□□□□ -1.6
CUX1-206ENST00000437600 A8MUU9 505 aa5.04□□□□□ -1.6
CUX1-206ENST00000437600 C20orf166-AS1Q96NR2 134 aa5.03□□□□□ -1.6
CUX1-206ENST00000437600 NDUFAF8A1L188 74 aa5□□□□□ -1.61
CUX1-206ENST00000437600 MUC2Q02817 5179 aa4.98□□□□□ -1.61
CUX1-206ENST00000437600 XP32Q5T750 250 aa4.95□□□□□ -1.62
CUX1-206ENST00000437600 HMCN2Q8NDA2 5059 aa4.94□□□□□ -1.62
CUX1-206ENST00000437600 LUZP6Q538Z0 58 aa4.93□□□□□ -1.62
CUX1-206ENST00000437600 H0YAA0 97 aa4.92□□□□□ -1.62
CUX1-206ENST00000437600 SEC61BP60468 96 aaKnown RBP4.91□□□□□ -1.62
CUX1-206ENST00000437600 CRIPTQ9P021 101 aa4.91□□□□□ -1.62
CUX1-206ENST00000437600 UBR4Q5T4S7 5183 aa4.91□□□□□ -1.62
CUX1-206ENST00000437600 COX6B2Q6YFQ2 88 aa4.89□□□□□ -1.63
CUX1-206ENST00000437600 RNF213Q63HN8 5207 aa4.89□□□□□ -1.63
CUX1-206ENST00000437600 RPL37P61927 97 aaKnown RBP4.89□□□□□ -1.63
CUX1-206ENST00000437600 SPINT4Q6UDR6 99 aa4.86□□□□□ -1.63
CUX1-206ENST00000437600 A0A1B0GU33 70 aa4.85□□□□□ -1.63
CUX1-206ENST00000437600 LCE2DQ5TA82 110 aaPredicted RBP4.83□□□□□ -1.64
CUX1-206ENST00000437600 KRTAP3-3Q9BYR6 98 aa4.82□□□□□ -1.64
CUX1-206ENST00000437600 K7ERS5 55 aa4.82□□□□□ -1.64
CUX1-206ENST00000437600 TPRXLQ17RH7 258 aa4.8□□□□□ -1.64
CUX1-206ENST00000437600 H1FX-AS1Q4G0G2 97 aa4.8□□□□□ -1.64
CUX1-206ENST00000437600 KRTAP15-1Q3LI76 137 aa4.79□□□□□ -1.64
CUX1-206ENST00000437600 A0A0D9SG42 100 aa4.79□□□□□ -1.64
CUX1-206ENST00000437600 MUC17Q685J3 4493 aa4.76□□□□□ -1.65
CUX1-206ENST00000437600 KRTAP13-4Q3LI77 160 aa4.75□□□□□ -1.65
CUX1-206ENST00000437600 KRTAP10-6P60371 365 aaPredicted RBP4.75□□□□□ -1.65
CUX1-206ENST00000437600 S4R3F8 94 aa4.75□□□□□ -1.65
CUX1-206ENST00000437600 FAT4Q6V0I7 4981 aa4.74□□□□□ -1.65
CUX1-206ENST00000437600 KRTAP3-2Q9BYR7 98 aa4.71□□□□□ -1.66
CUX1-206ENST00000437600 KRTAP4-1Q9BYQ7 146 aa4.7□□□□□ -1.66
CUX1-206ENST00000437600 C10orf95Q9H7T3 257 aa4.64□□□□□ -1.67
CUX1-206ENST00000437600 KRTAP12-2P59991 146 aa4.58□□□□□ -1.68
CUX1-206ENST00000437600 LORP23490 312 aaPredicted RBP4.53□□□□□ -1.68
CUX1-206ENST00000437600 FLGP20930 4061 aaPredicted RBP4.51□□□□□ -1.69
CUX1-206ENST00000437600 M0QZ58 72 aa4.49□□□□□ -1.69
CUX1-206ENST00000437600 KRTAP12-1P59990 96 aa4.49□□□□□ -1.69
CUX1-206ENST00000437600 KRTAP19-2Q3LHN2 52 aa4.48□□□□□ -1.69
CUX1-206ENST00000437600 R4GN34 69 aa4.46□□□□□ -1.69
CUX1-206ENST00000437600 LCE2CQ5TA81 110 aa4.42□□□□□ -1.7
CUX1-206ENST00000437600 CAMK2N1Q7Z7J9 78 aa4.42□□□□□ -1.7
CUX1-206ENST00000437600 M0R2T5 61 aa4.35□□□□□ -1.71
CUX1-206ENST00000437600 MT1HP80294 61 aa4.34□□□□□ -1.71
CUX1-206ENST00000437600 PLAC4Q8WY50 150 aa4.25□□□□□ -1.73
CUX1-206ENST00000437600 PRO2289Q9P1D8 64 aa4.19□□□□□ -1.74
CUX1-206ENST00000437600 LCE2AQ5TA79 106 aaPredicted RBP4.19□□□□□ -1.74
CUX1-206ENST00000437600 USH2AO75445 5202 aa4.18□□□□□ -1.74
CUX1-206ENST00000437600 FSIP2Q5CZC0 6907 aa4.18□□□□□ -1.74
CUX1-206ENST00000437600 KRTAP9-8Q9BYQ0 159 aa4.16□□□□□ -1.74
CUX1-206ENST00000437600 MT1FP04733 61 aa4.16□□□□□ -1.74
CUX1-206ENST00000437600 MT2AP02795 61 aa4.15□□□□□ -1.75
CUX1-206ENST00000437600 LCE2BO14633 110 aa4.14□□□□□ -1.75
CUX1-206ENST00000437600 KRTAP10-10P60014 251 aa4.14□□□□□ -1.75
CUX1-206ENST00000437600 KRTAP19-1Q8IUB9 90 aa4.09□□□□□ -1.75
CUX1-206ENST00000437600 SPRR2GQ9BYE4 73 aa4.03□□□□□ -1.76
CUX1-206ENST00000437600 PP632Q6XCG6 107 aa4.01□□□□□ -1.77
CUX1-206ENST00000437600 KRTAP9-3Q9BYQ3 159 aa4□□□□□ -1.77
CUX1-206ENST00000437600 TNP1P09430 55 aa3.99□□□□□ -1.77
CUX1-206ENST00000437600 SSPOA2VEC9 5147 aa3.93□□□□□ -1.78
CUX1-206ENST00000437600 INE1O15225 51 aa3.92□□□□□ -1.78
CUX1-206ENST00000437600 KRTAP23-1A1A580 65 aa3.91□□□□□ -1.78
CUX1-206ENST00000437600 KMT2DO14686 5537 aa3.91□□□□□ -1.78
CUX1-206ENST00000437600 MT1BP07438 61 aa3.91□□□□□ -1.78
CUX1-206ENST00000437600 KRTAP19-8Q3LI54 63 aa3.87□□□□□ -1.79
CUX1-206ENST00000437600 LCE3AQ5TA76 89 aa3.87□□□□□ -1.79
CUX1-206ENST00000437600 SPRR5A0A1B0GTR4 108 aa3.83□□□□□ -1.8
CUX1-206ENST00000437600 MT1XP80297 61 aa3.82□□□□□ -1.8
CUX1-206ENST00000437600 KRTAP10-5P60370 271 aa3.82□□□□□ -1.8
CUX1-206ENST00000437600 KRTAP9-2Q9BYQ4 174 aa3.78□□□□□ -1.8
CUX1-206ENST00000437600 KRTAP10-7P60409 375 aaPredicted RBP3.77□□□□□ -1.81
CUX1-206ENST00000437600 FCGBPQ9Y6R7 5405 aaPredicted RBP3.75□□□□□ -1.81
CUX1-206ENST00000437600 KRTAP10-12P60413 245 aa3.69□□□□□ -1.82
CUX1-206ENST00000437600 KRTAP4-8A0A0G2JLE6 195 aa3.65□□□□□ -1.82
CUX1-206ENST00000437600 KRTAP4-8Q9BYQ9 185 aa3.65□□□□□ -1.82
CUX1-206ENST00000437600 KRTAP12-3P60328 96 aa3.65□□□□□ -1.83
CUX1-206ENST00000437600 KRTAP8-1Q8IUC2 63 aa3.65□□□□□ -1.83
CUX1-206ENST00000437600 KRTAP19-6Q3LI70 58 aa3.62□□□□□ -1.83
CUX1-206ENST00000437600 MACF1Q9UPN3 7388 aaKnown RBP3.62□□□□□ -1.83
CUX1-206ENST00000437600 SYNE2Q8WXH0 6885 aaKnown RBP3.6□□□□□ -1.83
CUX1-206ENST00000437600 CRCT1Q9UGL9 99 aa3.6□□□□□ -1.83
CUX1-206ENST00000437600 KRTAP19-5Q3LI72 72 aa3.57□□□□□ -1.84
CUX1-206ENST00000437600 MUC12Q9UKN1 5478 aa3.54□□□□□ -1.84
CUX1-206ENST00000437600 KRTAP4-7Q9BYR0 210 aa3.49□□□□□ -1.85
CUX1-206ENST00000437600 KRTAP9-6A0A140TA67 174 aa3.46□□□□□ -1.85
CUX1-206ENST00000437600 DSTQ03001 7570 aaKnown RBP3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms