RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 C7orf65Q6ZTY9 151 aa4.62□□□□□ -1.67
CD44-208ENST00000428726 LRP2P98164 4655 aa4.6□□□□□ -1.67
CD44-208ENST00000428726 DMAC1Q96GE9 116 aa4.6□□□□□ -1.67
CD44-208ENST00000428726 Q5VSD8 79 aa4.59□□□□□ -1.67
CD44-208ENST00000428726 LORP23490 312 aaPredicted RBP4.59□□□□□ -1.67
CD44-208ENST00000428726 KRTAP10-4P60372 401 aaPredicted RBP4.57□□□□□ -1.68
CD44-208ENST00000428726 MUC2Q02817 5179 aa4.56□□□□□ -1.68
CD44-208ENST00000428726 MIR22HGQ0VDD5 57 aa4.54□□□□□ -1.68
CD44-208ENST00000428726 KRTAP4-5Q9BYR2 181 aa4.53□□□□□ -1.68
CD44-208ENST00000428726 CRIPTQ9P021 101 aa4.52□□□□□ -1.69
CD44-208ENST00000428726 TNXBP22105 4242 aa4.52□□□□□ -1.69
CD44-208ENST00000428726 C20orf166-AS1Q96NR2 134 aa4.49□□□□□ -1.69
CD44-208ENST00000428726 UQCR11O14957 56 aa4.49□□□□□ -1.69
CD44-208ENST00000428726 A8MUU9 505 aa4.48□□□□□ -1.69
CD44-208ENST00000428726 CSAG1Q6PB30 78 aa4.47□□□□□ -1.69
CD44-208ENST00000428726 KRTAP3-1Q9BYR8 98 aa4.45□□□□□ -1.7
CD44-208ENST00000428726 SPATA8Q6RVD6 105 aa4.45□□□□□ -1.7
CD44-208ENST00000428726 KRTAP10-8P60410 259 aa4.44□□□□□ -1.7
CD44-208ENST00000428726 HERC2O95714 4834 aa4.42□□□□□ -1.7
CD44-208ENST00000428726 HERC1Q15751 4861 aa4.41□□□□□ -1.7
CD44-208ENST00000428726 H0YAA0 97 aa4.38□□□□□ -1.71
CD44-208ENST00000428726 LINC01554Q52M75 96 aa4.37□□□□□ -1.71
CD44-208ENST00000428726 A0A0D9SG42 100 aa4.37□□□□□ -1.71
CD44-208ENST00000428726 XP32Q5T750 250 aa4.37□□□□□ -1.71
CD44-208ENST00000428726 MT1HL1P0DM35 61 aa4.35□□□□□ -1.71
CD44-208ENST00000428726 RNF213Q63HN8 5207 aa4.35□□□□□ -1.71
CD44-208ENST00000428726 A0A1B0GU33 70 aa4.34□□□□□ -1.72
CD44-208ENST00000428726 KRTAP23-1A1A580 65 aa4.33□□□□□ -1.72
CD44-208ENST00000428726 COX6B2Q6YFQ2 88 aa4.33□□□□□ -1.72
CD44-208ENST00000428726 FAT4Q6V0I7 4981 aa4.31□□□□□ -1.72
CD44-208ENST00000428726 RPL37P61927 97 aaKnown RBP4.31□□□□□ -1.72
CD44-208ENST00000428726 PCLOQ9Y6V0 5065 aa4.31□□□□□ -1.72
CD44-208ENST00000428726 H1FX-AS1Q4G0G2 97 aa4.26□□□□□ -1.73
CD44-208ENST00000428726 SEC61BP60468 96 aaKnown RBP4.25□□□□□ -1.73
CD44-208ENST00000428726 P0C880 135 aa4.24□□□□□ -1.73
CD44-208ENST00000428726 UBR4Q5T4S7 5183 aa4.23□□□□□ -1.73
CD44-208ENST00000428726 KRTAP13-4Q3LI77 160 aa4.22□□□□□ -1.73
CD44-208ENST00000428726 C10orf95Q9H7T3 257 aa4.21□□□□□ -1.73
CD44-208ENST00000428726 S4R3F8 94 aa4.21□□□□□ -1.74
CD44-208ENST00000428726 KRTAP25-1Q3LHN0 102 aa4.19□□□□□ -1.74
CD44-208ENST00000428726 TPRXLQ17RH7 258 aa4.18□□□□□ -1.74
CD44-208ENST00000428726 K7ERS5 55 aa4.17□□□□□ -1.74
CD44-208ENST00000428726 SPINT4Q6UDR6 99 aa4.17□□□□□ -1.74
CD44-208ENST00000428726 KRTAP4-1Q9BYQ7 146 aa4.17□□□□□ -1.74
CD44-208ENST00000428726 KRTAP10-6P60371 365 aaPredicted RBP4.15□□□□□ -1.75
CD44-208ENST00000428726 BIRC6Q9NR09 4857 aa4.13□□□□□ -1.75
CD44-208ENST00000428726 ROMO1P60602 79 aa4.12□□□□□ -1.75
CD44-208ENST00000428726 MUC17Q685J3 4493 aa4.1□□□□□ -1.75
CD44-208ENST00000428726 KRTAP12-2P59991 146 aa4.08□□□□□ -1.76
CD44-208ENST00000428726 HMCN2Q8NDA2 5059 aa4.07□□□□□ -1.76
CD44-208ENST00000428726 M0QZ58 72 aa4.03□□□□□ -1.76
CD44-208ENST00000428726 R4GN34 69 aa3.99□□□□□ -1.77
CD44-208ENST00000428726 NDUFAF8A1L188 74 aa3.97□□□□□ -1.77
CD44-208ENST00000428726 KRTAP12-1P59990 96 aa3.96□□□□□ -1.78
CD44-208ENST00000428726 M0R2T5 61 aa3.92□□□□□ -1.78
CD44-208ENST00000428726 FSIP2Q5CZC0 6907 aa3.91□□□□□ -1.78
CD44-208ENST00000428726 USH2AO75445 5202 aa3.89□□□□□ -1.79
CD44-208ENST00000428726 KRTAP19-2Q3LHN2 52 aa3.85□□□□□ -1.79
CD44-208ENST00000428726 FLGP20930 4061 aaPredicted RBP3.84□□□□□ -1.79
CD44-208ENST00000428726 CAMK2N1Q7Z7J9 78 aa3.83□□□□□ -1.8
CD44-208ENST00000428726 KRTAP15-1Q3LI76 137 aa3.81□□□□□ -1.8
CD44-208ENST00000428726 KMT2DO14686 5537 aa3.74□□□□□ -1.81
CD44-208ENST00000428726 KRTAP10-10P60014 251 aa3.72□□□□□ -1.81
CD44-208ENST00000428726 LOC100996750A0A140TA64 210 aa3.7□□□□□ -1.82
CD44-208ENST00000428726 KRTAP4-6Q9BYQ5 205 aa3.7□□□□□ -1.82
CD44-208ENST00000428726 PLAC4Q8WY50 150 aa3.69□□□□□ -1.82
CD44-208ENST00000428726 MT1HP80294 61 aa3.68□□□□□ -1.82
CD44-208ENST00000428726 MT1FP04733 61 aa3.64□□□□□ -1.83
CD44-208ENST00000428726 KRTAP19-1Q8IUB9 90 aa3.6□□□□□ -1.83
CD44-208ENST00000428726 MT2AP02795 61 aa3.59□□□□□ -1.83
CD44-208ENST00000428726 PP632Q6XCG6 107 aa3.58□□□□□ -1.84
CD44-208ENST00000428726 SPRR2GQ9BYE4 73 aa3.56□□□□□ -1.84
CD44-208ENST00000428726 LUZP6Q538Z0 58 aa3.55□□□□□ -1.84
CD44-208ENST00000428726 KRTAP9-8Q9BYQ0 159 aa3.54□□□□□ -1.84
CD44-208ENST00000428726 TNP1P09430 55 aa3.53□□□□□ -1.84
CD44-208ENST00000428726 KRTAP19-4Q3LI73 84 aa3.5□□□□□ -1.85
CD44-208ENST00000428726 LCE3AQ5TA76 89 aa3.46□□□□□ -1.86
CD44-208ENST00000428726 MT1BP07438 61 aa3.42□□□□□ -1.86
CD44-208ENST00000428726 KRTAP19-8Q3LI54 63 aa3.42□□□□□ -1.86
CD44-208ENST00000428726 KRTAP10-7P60409 375 aaPredicted RBP3.4□□□□□ -1.87
CD44-208ENST00000428726 DSTQ03001 7570 aaKnown RBP3.39□□□□□ -1.87
CD44-208ENST00000428726 KRTAP9-4Q9BYQ2 154 aa3.38□□□□□ -1.87
CD44-208ENST00000428726 MT1XP80297 61 aa3.37□□□□□ -1.87
CD44-208ENST00000428726 KRTAP10-5P60370 271 aa3.37□□□□□ -1.87
CD44-208ENST00000428726 KRTAP9-3Q9BYQ3 159 aa3.37□□□□□ -1.87
CD44-208ENST00000428726 KRTAP4-8A0A0G2JLE6 195 aa3.35□□□□□ -1.87
CD44-208ENST00000428726 KRTAP4-8Q9BYQ9 185 aa3.35□□□□□ -1.87
CD44-208ENST00000428726 SSPOA2VEC9 5147 aa3.35□□□□□ -1.87
CD44-208ENST00000428726 LCE4AQ5TA78 99 aa3.34□□□□□ -1.88
CD44-208ENST00000428726 KRTAP9-6A0A140TA67 174 aa3.33□□□□□ -1.88
CD44-208ENST00000428726 KRTAP9-7A8MTY7 169 aa3.33□□□□□ -1.88
CD44-208ENST00000428726 KRTAP9-9Q9BYP9 154 aa3.32□□□□□ -1.88
CD44-208ENST00000428726 MUC12Q9UKN1 5478 aa3.31□□□□□ -1.88
CD44-208ENST00000428726 LCE5AQ5TCM9 118 aa3.29□□□□□ -1.88
CD44-208ENST00000428726 KRTAP10-12P60413 245 aa3.28□□□□□ -1.88
CD44-208ENST00000428726 SPRR5A0A1B0GTR4 108 aa3.27□□□□□ -1.89
CD44-208ENST00000428726 OBSCNQ5VST9 7968 aa3.27□□□□□ -1.89
CD44-208ENST00000428726 KRTAP8-1Q8IUC2 63 aa3.27□□□□□ -1.89
CD44-208ENST00000428726 FCGBPQ9Y6R7 5405 aaPredicted RBP3.25□□□□□ -1.89
CD44-208ENST00000428726 PRO2289Q9P1D8 64 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms