RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 A0A1B0GU69 56 aa13.35□□□□□ -0.27
LDB1-202ENST00000425280 HERC1Q15751 4861 aa13.32□□□□□ -0.28
LDB1-202ENST00000425280 RBM12B-AS1Q9P1G2 102 aa13.32□□□□□ -0.28
LDB1-202ENST00000425280 KRTAP4-1Q9BYQ7 146 aa13.3□□□□□ -0.28
LDB1-202ENST00000425280 H1FX-AS1Q4G0G2 97 aa13.3□□□□□ -0.28
LDB1-202ENST00000425280 LCA10Q71F78 164 aa13.28□□□□□ -0.28
LDB1-202ENST00000425280 KRTAP3-3Q9BYR6 98 aa13.27□□□□□ -0.28
LDB1-202ENST00000425280 S4R3F8 94 aa13.27□□□□□ -0.28
LDB1-202ENST00000425280 MUC17Q685J3 4493 aa13.26□□□□□ -0.29
LDB1-202ENST00000425280 HMCN2Q8NDA2 5059 aa13.22□□□□□ -0.29
LDB1-202ENST00000425280 A6NED7 52 aa13.21□□□□□ -0.29
LDB1-202ENST00000425280 SEC61GP60059 68 aa13.16□□□□□ -0.3
LDB1-202ENST00000425280 A8MU10 97 aa13.08□□□□□ -0.32
LDB1-202ENST00000425280 CDC42SE1Q9NRR8 79 aa13.01□□□□□ -0.33
LDB1-202ENST00000425280 UQCR11O14957 56 aa12.98□□□□□ -0.33
LDB1-202ENST00000425280 KRTAP19-2Q3LHN2 52 aa12.98□□□□□ -0.33
LDB1-202ENST00000425280 PMAIP1Q13794 54 aa12.93□□□□□ -0.34
LDB1-202ENST00000425280 CSAG1Q6PB30 78 aa12.92□□□□□ -0.34
LDB1-202ENST00000425280 SPATA8Q6RVD6 105 aa12.89□□□□□ -0.35
LDB1-202ENST00000425280 MIR22HGQ0VDD5 57 aa12.87□□□□□ -0.35
LDB1-202ENST00000425280 A0A1B0GU33 70 aa12.87□□□□□ -0.35
LDB1-202ENST00000425280 KRTAP10-6P60371 365 aaPredicted RBP12.87□□□□□ -0.35
LDB1-202ENST00000425280 KRTAP3-2Q9BYR7 98 aa12.87□□□□□ -0.35
LDB1-202ENST00000425280 MUC2Q02817 5179 aa12.85□□□□□ -0.35
LDB1-202ENST00000425280 H0YAA0 97 aa12.74□□□□□ -0.37
LDB1-202ENST00000425280 ADM2Q7Z4H4 148 aa12.74□□□□□ -0.37
LDB1-202ENST00000425280 P0C880 135 aa12.73□□□□□ -0.37
LDB1-202ENST00000425280 KTN1-AS1Q86SY8 53 aa12.65□□□□□ -0.38
LDB1-202ENST00000425280 A6NN06 94 aa12.65□□□□□ -0.39
LDB1-202ENST00000425280 FLGP20930 4061 aaPredicted RBP12.63□□□□□ -0.39
LDB1-202ENST00000425280 UBR4Q5T4S7 5183 aa12.59□□□□□ -0.39
LDB1-202ENST00000425280 KRTAP13-4Q3LI77 160 aa12.58□□□□□ -0.4
LDB1-202ENST00000425280 RNF213Q63HN8 5207 aa12.56□□□□□ -0.4
LDB1-202ENST00000425280 LCE2CQ5TA81 110 aa12.56□□□□□ -0.4
LDB1-202ENST00000425280 A0A0D9SG42 100 aa12.35□□□□□ -0.43
LDB1-202ENST00000425280 M0QZ58 72 aa12.35□□□□□ -0.43
LDB1-202ENST00000425280 FAT4Q6V0I7 4981 aa12.29□□□□□ -0.44
LDB1-202ENST00000425280 LORP23490 312 aaPredicted RBP12.29□□□□□ -0.44
LDB1-202ENST00000425280 MT1HP80294 61 aa12.27□□□□□ -0.45
LDB1-202ENST00000425280 R4GN34 69 aa12.23□□□□□ -0.45
LDB1-202ENST00000425280 K7ERS5 55 aa12.18□□□□□ -0.46
LDB1-202ENST00000425280 M0R2T5 61 aa12.16□□□□□ -0.46
LDB1-202ENST00000425280 KRTAP12-1P59990 96 aa12.08□□□□□ -0.48
LDB1-202ENST00000425280 KRTAP12-2P59991 146 aa12.08□□□□□ -0.48
LDB1-202ENST00000425280 LINC01554Q52M75 96 aa12.07□□□□□ -0.48
LDB1-202ENST00000425280 PRAC1Q96KF2 57 aa12.04□□□□□ -0.48
LDB1-202ENST00000425280 SPINT4Q6UDR6 99 aa12.02□□□□□ -0.49
LDB1-202ENST00000425280 CRIPTQ9P021 101 aa11.99□□□□□ -0.49
LDB1-202ENST00000425280 KRTAP9-8Q9BYQ0 159 aa11.87□□□□□ -0.51
LDB1-202ENST00000425280 MT2AP02795 61 aa11.86□□□□□ -0.51
LDB1-202ENST00000425280 MT1FP04733 61 aa11.8□□□□□ -0.52
LDB1-202ENST00000425280 ROMO1P60602 79 aa11.78□□□□□ -0.52
LDB1-202ENST00000425280 KRTAP10-10P60014 251 aa11.76□□□□□ -0.53
LDB1-202ENST00000425280 SPRR2GQ9BYE4 73 aa11.72□□□□□ -0.53
LDB1-202ENST00000425280 KRTAP19-1Q8IUB9 90 aa11.7□□□□□ -0.54
LDB1-202ENST00000425280 LCE2AQ5TA79 106 aaPredicted RBP11.58□□□□□ -0.56
LDB1-202ENST00000425280 CAMK2N1Q7Z7J9 78 aa11.49□□□□□ -0.57
LDB1-202ENST00000425280 KRTAP25-1Q3LHN0 102 aa11.44□□□□□ -0.58
LDB1-202ENST00000425280 C10orf95Q9H7T3 257 aa11.44□□□□□ -0.58
LDB1-202ENST00000425280 KRTAP9-3Q9BYQ3 159 aa11.42□□□□□ -0.58
LDB1-202ENST00000425280 PLAC4Q8WY50 150 aa11.38□□□□□ -0.59
LDB1-202ENST00000425280 KRTAP19-8Q3LI54 63 aa11.37□□□□□ -0.59
LDB1-202ENST00000425280 MT1BP07438 61 aa11.23□□□□□ -0.61
LDB1-202ENST00000425280 LCE2BO14633 110 aa11.08□□□□□ -0.64
LDB1-202ENST00000425280 TNP1P09430 55 aa10.97□□□□□ -0.65
LDB1-202ENST00000425280 MT1XP80297 61 aa10.94□□□□□ -0.66
LDB1-202ENST00000425280 KRTAP10-5P60370 271 aa10.93□□□□□ -0.66
LDB1-202ENST00000425280 PP632Q6XCG6 107 aa10.77□□□□□ -0.69
LDB1-202ENST00000425280 USH2AO75445 5202 aa10.7□□□□□ -0.7
LDB1-202ENST00000425280 PRO2289Q9P1D8 64 aa10.7□□□□□ -0.7
LDB1-202ENST00000425280 KRTAP23-1A1A580 65 aa10.69□□□□□ -0.7
LDB1-202ENST00000425280 H3BS24 57 aa10.61□□□□□ -0.71
LDB1-202ENST00000425280 KRTAP10-7P60409 375 aaPredicted RBP10.53□□□□□ -0.72
LDB1-202ENST00000425280 LCE3AQ5TA76 89 aa10.51□□□□□ -0.73
LDB1-202ENST00000425280 KRTAP10-12P60413 245 aa10.43□□□□□ -0.74
LDB1-202ENST00000425280 KRTAP15-1Q3LI76 137 aa10.38□□□□□ -0.75
LDB1-202ENST00000425280 LCE2DQ5TA82 110 aaPredicted RBP10.38□□□□□ -0.75
LDB1-202ENST00000425280 SSPOA2VEC9 5147 aa10.35□□□□□ -0.75
LDB1-202ENST00000425280 KRTAP19-6Q3LI70 58 aa10.29□□□□□ -0.76
LDB1-202ENST00000425280 KRTAP8-1Q8IUC2 63 aa10.27□□□□□ -0.76
LDB1-202ENST00000425280 FSIP2Q5CZC0 6907 aa10.25□□□□□ -0.77
LDB1-202ENST00000425280 NDUFAF8A1L188 74 aa10.13□□□□□ -0.79
LDB1-202ENST00000425280 KRTAP4-8A0A0G2JLE6 195 aa10.06□□□□□ -0.8
LDB1-202ENST00000425280 KRTAP12-3P60328 96 aa10.06□□□□□ -0.8
LDB1-202ENST00000425280 KRTAP4-8Q9BYQ9 185 aa10.06□□□□□ -0.8
LDB1-202ENST00000425280 KMT2DO14686 5537 aa10□□□□□ -0.81
LDB1-202ENST00000425280 KRTAP19-5Q3LI72 72 aa9.95□□□□□ -0.82
LDB1-202ENST00000425280 KRTAP9-2Q9BYQ4 174 aa9.94□□□□□ -0.82
LDB1-202ENST00000425280 FCGBPQ9Y6R7 5405 aaPredicted RBP9.83□□□□□ -0.84
LDB1-202ENST00000425280 KRTAP19-7Q3SYF9 63 aa9.75□□□□□ -0.85
LDB1-202ENST00000425280 SPRR5A0A1B0GTR4 108 aa9.7□□□□□ -0.86
LDB1-202ENST00000425280 LUZP6Q538Z0 58 aa9.58□□□□□ -0.88
LDB1-202ENST00000425280 MT1EP04732 61 aa9.55□□□□□ -0.88
LDB1-202ENST00000425280 CRCT1Q9UGL9 99 aa9.54□□□□□ -0.88
LDB1-202ENST00000425280 LCE3CQ5T5A8 94 aa9.43□□□□□ -0.9
LDB1-202ENST00000425280 MT1LQ93083 61 aa9.41□□□□□ -0.9
LDB1-202ENST00000425280 KRTAP19-4Q3LI73 84 aa9.27□□□□□ -0.93
LDB1-202ENST00000425280 MACF1Q9UPN3 7388 aaKnown RBP9.27□□□□□ -0.93
LDB1-202ENST00000425280 KRTAP4-7Q9BYR0 210 aa9.2□□□□□ -0.94
LDB1-202ENST00000425280 KRTAP9-6A0A140TA67 174 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms