RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 A0A1B0GU69 56 aa7.97□□□□□ -1.13
USP4-203ENST00000415188 SPINK7P58062 85 aa7.97□□□□□ -1.13
USP4-203ENST00000415188 A8MU10 97 aa7.95□□□□□ -1.14
USP4-203ENST00000415188 SPTSSBQ8NFR3 76 aa7.94□□□□□ -1.14
USP4-203ENST00000415188 PMAIP1Q13794 54 aa7.93□□□□□ -1.14
USP4-203ENST00000415188 MUC17Q685J3 4493 aa7.9□□□□□ -1.14
USP4-203ENST00000415188 FAT4Q6V0I7 4981 aa7.85□□□□□ -1.15
USP4-203ENST00000415188 A6NN06 94 aa7.84□□□□□ -1.15
USP4-203ENST00000415188 SPATA8Q6RVD6 105 aa7.84□□□□□ -1.15
USP4-203ENST00000415188 UQCR11O14957 56 aa7.83□□□□□ -1.16
USP4-203ENST00000415188 TPRXLQ17RH7 258 aa7.83□□□□□ -1.16
USP4-203ENST00000415188 SEC61GP60059 68 aa7.82□□□□□ -1.16
USP4-203ENST00000415188 MIR22HGQ0VDD5 57 aa7.78□□□□□ -1.16
USP4-203ENST00000415188 COX6B2Q6YFQ2 88 aa7.78□□□□□ -1.16
USP4-203ENST00000415188 KTN1-AS1Q86SY8 53 aa7.78□□□□□ -1.16
USP4-203ENST00000415188 KRTAP3-1Q9BYR8 98 aa7.78□□□□□ -1.16
USP4-203ENST00000415188 RPL37P61927 97 aaKnown RBP7.76□□□□□ -1.17
USP4-203ENST00000415188 LCE2AQ5TA79 106 aaPredicted RBP7.73□□□□□ -1.17
USP4-203ENST00000415188 XP32Q5T750 250 aa7.69□□□□□ -1.18
USP4-203ENST00000415188 KRTAP9-2Q9BYQ4 174 aa7.65□□□□□ -1.18
USP4-203ENST00000415188 KRTAP4-1Q9BYQ7 146 aa7.62□□□□□ -1.19
USP4-203ENST00000415188 A0A1B0GU33 70 aa7.59□□□□□ -1.19
USP4-203ENST00000415188 SEC61BP60468 96 aaKnown RBP7.58□□□□□ -1.2
USP4-203ENST00000415188 H1FX-AS1Q4G0G2 97 aa7.58□□□□□ -1.2
USP4-203ENST00000415188 H0YAA0 97 aa7.53□□□□□ -1.2
USP4-203ENST00000415188 S4R3F8 94 aa7.5□□□□□ -1.21
USP4-203ENST00000415188 KRTAP3-3Q9BYR6 98 aa7.49□□□□□ -1.21
USP4-203ENST00000415188 RBM12B-AS1Q9P1G2 102 aa7.46□□□□□ -1.22
USP4-203ENST00000415188 LCE2CQ5TA81 110 aa7.43□□□□□ -1.22
USP4-203ENST00000415188 KRTAP9-6A0A140TA67 174 aa7.42□□□□□ -1.22
USP4-203ENST00000415188 KRTAP19-2Q3LHN2 52 aa7.41□□□□□ -1.22
USP4-203ENST00000415188 K7ERS5 55 aa7.38□□□□□ -1.23
USP4-203ENST00000415188 KRTAP10-6P60371 365 aaPredicted RBP7.38□□□□□ -1.23
USP4-203ENST00000415188 KRTAP3-2Q9BYR7 98 aa7.36□□□□□ -1.23
USP4-203ENST00000415188 MT1HP80294 61 aa7.34□□□□□ -1.23
USP4-203ENST00000415188 PRAC1Q96KF2 57 aa7.34□□□□□ -1.23
USP4-203ENST00000415188 LCE2DQ5TA82 110 aaPredicted RBP7.33□□□□□ -1.24
USP4-203ENST00000415188 ADM2Q7Z4H4 148 aa7.32□□□□□ -1.24
USP4-203ENST00000415188 FSIP2Q5CZC0 6907 aa7.29□□□□□ -1.24
USP4-203ENST00000415188 CSAG1Q6PB30 78 aa7.28□□□□□ -1.24
USP4-203ENST00000415188 FLGP20930 4061 aaPredicted RBP7.23□□□□□ -1.25
USP4-203ENST00000415188 KRTAP13-4Q3LI77 160 aa7.22□□□□□ -1.25
USP4-203ENST00000415188 P0C880 135 aa7.21□□□□□ -1.26
USP4-203ENST00000415188 LORP23490 312 aaPredicted RBP7.21□□□□□ -1.26
USP4-203ENST00000415188 CRCT1Q9UGL9 99 aa7.2□□□□□ -1.26
USP4-203ENST00000415188 M0R2T5 61 aa7.17□□□□□ -1.26
USP4-203ENST00000415188 LINC01554Q52M75 96 aa7.16□□□□□ -1.26
USP4-203ENST00000415188 M0QZ58 72 aa7.15□□□□□ -1.27
USP4-203ENST00000415188 A0A0D9SG42 100 aa7.13□□□□□ -1.27
USP4-203ENST00000415188 ROMO1P60602 79 aa7.13□□□□□ -1.27
USP4-203ENST00000415188 KRTAP25-1Q3LHN0 102 aa7.11□□□□□ -1.27
USP4-203ENST00000415188 KRTAP12-1P59990 96 aa7□□□□□ -1.29
USP4-203ENST00000415188 KRTAP12-2P59991 146 aa6.98□□□□□ -1.29
USP4-203ENST00000415188 SPINT4Q6UDR6 99 aa6.94□□□□□ -1.3
USP4-203ENST00000415188 KRTAP9-8Q9BYQ0 159 aa6.92□□□□□ -1.3
USP4-203ENST00000415188 R4GN34 69 aa6.92□□□□□ -1.3
USP4-203ENST00000415188 USH2AO75445 5202 aa6.91□□□□□ -1.3
USP4-203ENST00000415188 SSPOA2VEC9 5147 aa6.87□□□□□ -1.31
USP4-203ENST00000415188 CRIPTQ9P021 101 aa6.85□□□□□ -1.31
USP4-203ENST00000415188 MT2AP02795 61 aa6.82□□□□□ -1.32
USP4-203ENST00000415188 MT1FP04733 61 aa6.79□□□□□ -1.32
USP4-203ENST00000415188 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.73□□□□□ -1.33
USP4-203ENST00000415188 KRTAP10-10P60014 251 aa6.73□□□□□ -1.33
USP4-203ENST00000415188 LCE2BO14633 110 aa6.72□□□□□ -1.33
USP4-203ENST00000415188 KRTAP9-3Q9BYQ3 159 aa6.72□□□□□ -1.33
USP4-203ENST00000415188 FCGBPQ9Y6R7 5405 aaPredicted RBP6.7□□□□□ -1.34
USP4-203ENST00000415188 C10orf95Q9H7T3 257 aa6.7□□□□□ -1.34
USP4-203ENST00000415188 KRTAP9-7A8MTY7 169 aa6.66□□□□□ -1.34
USP4-203ENST00000415188 KRTAP19-1Q8IUB9 90 aa6.65□□□□□ -1.35
USP4-203ENST00000415188 CAMK2N1Q7Z7J9 78 aa6.54□□□□□ -1.36
USP4-203ENST00000415188 SYNE2Q8WXH0 6885 aaKnown RBP6.49□□□□□ -1.37
USP4-203ENST00000415188 MACF1Q9UPN3 7388 aaKnown RBP6.49□□□□□ -1.37
USP4-203ENST00000415188 KRTAP19-6Q3LI70 58 aa6.47□□□□□ -1.37
USP4-203ENST00000415188 PP632Q6XCG6 107 aa6.47□□□□□ -1.37
USP4-203ENST00000415188 KRTAP15-1Q3LI76 137 aa6.42□□□□□ -1.38
USP4-203ENST00000415188 SPRR2GQ9BYE4 73 aa6.42□□□□□ -1.38
USP4-203ENST00000415188 KRTAP23-1A1A580 65 aa6.35□□□□□ -1.39
USP4-203ENST00000415188 TNP1P09430 55 aa6.34□□□□□ -1.4
USP4-203ENST00000415188 PLAC4Q8WY50 150 aa6.34□□□□□ -1.4
USP4-203ENST00000415188 KRTAP6-3Q3LI67 103 aa6.22□□□□□ -1.41
USP4-203ENST00000415188 KRTAP19-8Q3LI54 63 aa6.2□□□□□ -1.42
USP4-203ENST00000415188 H3BS24 57 aa6.19□□□□□ -1.42
USP4-203ENST00000415188 MT1BP07438 61 aa6.19□□□□□ -1.42
USP4-203ENST00000415188 NEBP20929 6669 aa6.12□□□□□ -1.43
USP4-203ENST00000415188 NDUFAF8A1L188 74 aa6.11□□□□□ -1.43
USP4-203ENST00000415188 MUC12Q9UKN1 5478 aa6.08□□□□□ -1.44
USP4-203ENST00000415188 KRTAP10-5P60370 271 aa6.05□□□□□ -1.44
USP4-203ENST00000415188 LUZP6Q538Z0 58 aa5.96□□□□□ -1.46
USP4-203ENST00000415188 MT1XP80297 61 aa5.94□□□□□ -1.46
USP4-203ENST00000415188 LCE3AQ5TA76 89 aa5.93□□□□□ -1.46
USP4-203ENST00000415188 SPRR5A0A1B0GTR4 108 aa5.91□□□□□ -1.46
USP4-203ENST00000415188 KMT2DO14686 5537 aa5.91□□□□□ -1.46
USP4-203ENST00000415188 MDN1Q9NU22 5596 aa5.9□□□□□ -1.47
USP4-203ENST00000415188 KRTAP5-9P26371 169 aa5.89□□□□□ -1.47
USP4-203ENST00000415188 KRTAP8-1Q8IUC2 63 aa5.89□□□□□ -1.47
USP4-203ENST00000415188 PRO2289Q9P1D8 64 aa5.87□□□□□ -1.47
USP4-203ENST00000415188 KRTAP20-1Q3LI63 56 aa5.83□□□□□ -1.48
USP4-203ENST00000415188 KRTAP10-12P60413 245 aa5.82□□□□□ -1.48
USP4-203ENST00000415188 KRTAP10-7P60409 375 aaPredicted RBP5.71□□□□□ -1.49
USP4-203ENST00000415188 SPRR2FQ96RM1 72 aa5.71□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms