RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 C1orf64Q8NEQ6 169 aa3.05□□□□□ -1.92
USP54-202ENST00000413442 KRTAP9-3Q9BYQ3 159 aa3.05□□□□□ -1.92
USP54-202ENST00000413442 CYP4F30PQ9H0H9 118 aa3.05□□□□□ -1.92
USP54-202ENST00000413442 K7ERU9 68 aa3.04□□□□□ -1.92
USP54-202ENST00000413442 MT1FP04733 61 aa3.04□□□□□ -1.92
USP54-202ENST00000413442 HIST1H4AP62805 103 aaKnown RBP3.04□□□□□ -1.92
USP54-202ENST00000413442 A8MUN3 132 aa3.02□□□□□ -1.93
USP54-202ENST00000413442 H3BPC8 53 aa3.02□□□□□ -1.93
USP54-202ENST00000413442 SCGB1A1P11684 91 aa3.02□□□□□ -1.93
USP54-202ENST00000413442 C5orf47Q569G3 176 aa3.02□□□□□ -1.93
USP54-202ENST00000413442 SVIPQ8NHG7 77 aa3.02□□□□□ -1.93
USP54-202ENST00000413442 S4R3F8 94 aa3.02□□□□□ -1.93
USP54-202ENST00000413442 MP68P56378 58 aa3□□□□□ -1.93
USP54-202ENST00000413442 KRTAP3-1Q9BYR8 98 aa3□□□□□ -1.93
USP54-202ENST00000413442 IMUPQ9GZP8 106 aa3□□□□□ -1.93
USP54-202ENST00000413442 H0Y9P7 68 aa2.99□□□□□ -1.93
USP54-202ENST00000413442 KRTAP5-3Q6L8H2 238 aa2.99□□□□□ -1.93
USP54-202ENST00000413442 CRIPTQ9P021 101 aa2.99□□□□□ -1.93
USP54-202ENST00000413442 NDUFC1O43677 76 aa2.97□□□□□ -1.93
USP54-202ENST00000413442 LCA10Q71F78 164 aa2.97□□□□□ -1.93
USP54-202ENST00000413442 SMIM20Q8N5G0 67 aa2.97□□□□□ -1.93
USP54-202ENST00000413442 H0YAA0 97 aa2.96□□□□□ -1.94
USP54-202ENST00000413442 KRTAP19-6Q3LI70 58 aa2.96□□□□□ -1.94
USP54-202ENST00000413442 OCR1Q9BZK8 76 aa2.96□□□□□ -1.94
USP54-202ENST00000413442 USH2AO75445 5202 aa2.95□□□□□ -1.94
USP54-202ENST00000413442 FAM236AA0A1B0GUQ0 79 aa2.95□□□□□ -1.94
USP54-202ENST00000413442 FAM236BA0A1B0GV22 79 aa2.95□□□□□ -1.94
USP54-202ENST00000413442 LINC00208Q96KT6 92 aa2.95□□□□□ -1.94
USP54-202ENST00000413442 A0A087WVE0 104 aa2.94□□□□□ -1.94
USP54-202ENST00000413442 KLKP1Q107X0 134 aa2.93□□□□□ -1.94
USP54-202ENST00000413442 SPRR2GQ9BYE4 73 aa2.93□□□□□ -1.94
USP54-202ENST00000413442 KRTAP19-8Q3LI54 63 aa2.89□□□□□ -1.95
USP54-202ENST00000413442 Q5VV11 94 aa2.89□□□□□ -1.95
USP54-202ENST00000413442 C20orf197Q8N268 126 aa2.89□□□□□ -1.95
USP54-202ENST00000413442 SSPOA2VEC9 5147 aa2.88□□□□□ -1.95
USP54-202ENST00000413442 TRAV7A0A075B6U4 112 aa2.88□□□□□ -1.95
USP54-202ENST00000413442 FCGBPQ9Y6R7 5405 aaPredicted RBP2.87□□□□□ -1.95
USP54-202ENST00000413442 ACYP2P14621 99 aa2.87□□□□□ -1.95
USP54-202ENST00000413442 SPTSSBQ8NFR3 76 aa2.87□□□□□ -1.95
USP54-202ENST00000413442 DMAC1Q96GE9 116 aa2.87□□□□□ -1.95
USP54-202ENST00000413442 A6NN06 94 aa2.83□□□□□ -1.96
USP54-202ENST00000413442 H3BS24 57 aa2.83□□□□□ -1.96
USP54-202ENST00000413442 ANAPC13Q9BS18 74 aa2.83□□□□□ -1.96
USP54-202ENST00000413442 MT-ATP8P03928 68 aa2.82□□□□□ -1.96
USP54-202ENST00000413442 MT1BP07438 61 aa2.82□□□□□ -1.96
USP54-202ENST00000413442 ADM2Q7Z4H4 148 aa2.82□□□□□ -1.96
USP54-202ENST00000413442 SPANXA2-OT1Q8N9U9 137 aa2.81□□□□□ -1.96
USP54-202ENST00000413442 KRTAP10-5P60370 271 aa2.8□□□□□ -1.96
USP54-202ENST00000413442 KRTAP6-3Q3LI67 103 aa2.8□□□□□ -1.96
USP54-202ENST00000413442 PRO2289Q9P1D8 64 aa2.8□□□□□ -1.96
USP54-202ENST00000413442 R4GN34 69 aa2.8□□□□□ -1.96
USP54-202ENST00000413442 SERP2Q8N6R1 65 aa2.79□□□□□ -1.96
USP54-202ENST00000413442 PLAC4Q8WY50 150 aa2.79□□□□□ -1.96
USP54-202ENST00000413442 MACF1Q9UPN3 7388 aaKnown RBP2.78□□□□□ -1.96
USP54-202ENST00000413442 CHKB-CPT1BH3BT56 60 aa2.77□□□□□ -1.97
USP54-202ENST00000413442 M0QZ58 72 aa2.76□□□□□ -1.97
USP54-202ENST00000413442 SYNE2Q8WXH0 6885 aaKnown RBP2.74□□□□□ -1.97
USP54-202ENST00000413442 P0C880 135 aa2.73□□□□□ -1.97
USP54-202ENST00000413442 CCDC179H3BU77 68 aa2.72□□□□□ -1.97
USP54-202ENST00000413442 RPS28P62857 69 aaKnown RBP2.72□□□□□ -1.97
USP54-202ENST00000413442 SNURFQ9Y675 71 aa2.72□□□□□ -1.97
USP54-202ENST00000413442 COX7CP15954 63 aa2.71□□□□□ -1.98
USP54-202ENST00000413442 SEC61GP60059 68 aa2.69□□□□□ -1.98
USP54-202ENST00000413442 TMEM258P61165 79 aa2.69□□□□□ -1.98
USP54-202ENST00000413442 KRTAP5-9P26371 169 aa2.68□□□□□ -1.98
USP54-202ENST00000413442 KRTAP12-2P59991 146 aa2.68□□□□□ -1.98
USP54-202ENST00000413442 SERP1Q9Y6X1 66 aa2.67□□□□□ -1.98
USP54-202ENST00000413442 MT1XP80297 61 aa2.65□□□□□ -1.99
USP54-202ENST00000413442 LINC01554Q52M75 96 aa2.65□□□□□ -1.99
USP54-202ENST00000413442 COA5Q86WW8 74 aa2.64□□□□□ -1.99
USP54-202ENST00000413442 H7BZZ5 65 aa2.63□□□□□ -1.99
USP54-202ENST00000413442 ATP5EP56381 51 aaPredicted RBP2.61□□□□□ -1.99
USP54-202ENST00000413442 A0A1B0GU33 70 aa2.59□□□□□ -1.99
USP54-202ENST00000413442 KRTAP8-1Q8IUC2 63 aa2.59□□□□□ -1.99
USP54-202ENST00000413442 PRO0628Q9UI54 55 aa2.59□□□□□ -1.99
USP54-202ENST00000413442 NEBP20929 6669 aa2.57□□□□□ -2
USP54-202ENST00000413442 SMIM26A0A096LP01 95 aa2.57□□□□□ -2
USP54-202ENST00000413442 KRTAP10-12P60413 245 aa2.57□□□□□ -2
USP54-202ENST00000413442 CAMK2N1Q7Z7J9 78 aa2.57□□□□□ -2
USP54-202ENST00000413442 A0A1B0GU69 56 aa2.56□□□□□ -2
USP54-202ENST00000413442 SPRR2FQ96RM1 72 aa2.55□□□□□ -2
USP54-202ENST00000413442 PRR15LQ9BU68 103 aa2.55□□□□□ -2
USP54-202ENST00000413442 KRTAP2-3P0C7H8 128 aa2.53□□□□□ -2
USP54-202ENST00000413442 KRTAP20-1Q3LI63 56 aa2.53□□□□□ -2
USP54-202ENST00000413442 KRTAP13-4Q3LI77 160 aa2.53□□□□□ -2
USP54-202ENST00000413442 LCE1AQ5T7P2 110 aa2.53□□□□□ -2
USP54-202ENST00000413442 KRTAP2-4Q9BYR9 128 aa2.53□□□□□ -2
USP54-202ENST00000413442 CYSTM1Q9H1C7 97 aa2.53□□□□□ -2
USP54-202ENST00000413442 MUC12Q9UKN1 5478 aa2.53□□□□□ -2
USP54-202ENST00000413442 KMT2DO14686 5537 aa2.52□□□□□ -2.01
USP54-202ENST00000413442 SPRR2EP22531 72 aa2.51□□□□□ -2.01
USP54-202ENST00000413442 SPRR2BP35325 72 aa2.51□□□□□ -2.01
USP54-202ENST00000413442 SPRR2AP35326 72 aa2.51□□□□□ -2.01
USP54-202ENST00000413442 KRTAP10-7P60409 375 aaPredicted RBP2.51□□□□□ -2.01
USP54-202ENST00000413442 V9GYY9 64 aa2.5□□□□□ -2.01
USP54-202ENST00000413442 SPATA8Q6RVD6 105 aa2.49□□□□□ -2.01
USP54-202ENST00000413442 SPINT4Q6UDR6 99 aa2.49□□□□□ -2.01
USP54-202ENST00000413442 LINC01558Q9Y6Z2 57 aa2.49□□□□□ -2.01
USP54-202ENST00000413442 MDN1Q9NU22 5596 aa2.49□□□□□ -2.01
USP54-202ENST00000413442 A0A0D9SG42 100 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms