RNA–Protein interactions for RNA: ENST00000406134.5

MSH2-202, Transcript of mutS homolog 2, humanhuman

TSL 1 (best) BASIC

Gene MSH2, Length 3,628 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-202ENST00000406134 UQCR11O14957 56 aa5.27□□□□□ -1.57
MSH2-202ENST00000406134 MYCBP2O75592 4640 aa5.26□□□□□ -1.57
MSH2-202ENST00000406134 KRTAP17-1Q9BYP8 105 aa5.25□□□□□ -1.57
MSH2-202ENST00000406134 H0YAA0 97 aa5.19□□□□□ -1.58
MSH2-202ENST00000406134 KRTAP25-1Q3LHN0 102 aa5.16□□□□□ -1.58
MSH2-202ENST00000406134 CRIPTQ9P021 101 aa5.16□□□□□ -1.58
MSH2-202ENST00000406134 KRTAP10-8P60410 259 aa5.15□□□□□ -1.59
MSH2-202ENST00000406134 KIAA1109Q2LD37 5005 aa5.14□□□□□ -1.59
MSH2-202ENST00000406134 EPPK1P58107 5090 aaKnown RBP5.14□□□□□ -1.59
MSH2-202ENST00000406134 P0C880 135 aa5.14□□□□□ -1.59
MSH2-202ENST00000406134 KRTAP3-3Q9BYR6 98 aa5.12□□□□□ -1.59
MSH2-202ENST00000406134 ABCA13Q86UQ4 5058 aa5.12□□□□□ -1.59
MSH2-202ENST00000406134 LRP2P98164 4655 aa5.11□□□□□ -1.59
MSH2-202ENST00000406134 COX6B2Q6YFQ2 88 aa5.09□□□□□ -1.59
MSH2-202ENST00000406134 SPINT4Q6UDR6 99 aa5.08□□□□□ -1.6
MSH2-202ENST00000406134 NDUFAF8A1L188 74 aa5.07□□□□□ -1.6
MSH2-202ENST00000406134 H1FX-AS1Q4G0G2 97 aa5.06□□□□□ -1.6
MSH2-202ENST00000406134 KRTAP10-6P60371 365 aaPredicted RBP5.05□□□□□ -1.6
MSH2-202ENST00000406134 XP32Q5T750 250 aa5.05□□□□□ -1.6
MSH2-202ENST00000406134 RPL37P61927 97 aaKnown RBP5.04□□□□□ -1.6
MSH2-202ENST00000406134 Q5VSD8 79 aa5.04□□□□□ -1.6
MSH2-202ENST00000406134 A0A1B0GU33 70 aa5.04□□□□□ -1.6
MSH2-202ENST00000406134 MT1HL1P0DM35 61 aa5.04□□□□□ -1.6
MSH2-202ENST00000406134 KRTAP3-2Q9BYR7 98 aa5.03□□□□□ -1.6
MSH2-202ENST00000406134 KRTAP13-4Q3LI77 160 aa5.02□□□□□ -1.61
MSH2-202ENST00000406134 MUC17Q685J3 4493 aa5.01□□□□□ -1.61
MSH2-202ENST00000406134 K7ERS5 55 aa4.93□□□□□ -1.62
MSH2-202ENST00000406134 S4R3F8 94 aa4.89□□□□□ -1.63
MSH2-202ENST00000406134 LUZP6Q538Z0 58 aa4.87□□□□□ -1.63
MSH2-202ENST00000406134 KRTAP4-5Q9BYR2 181 aa4.84□□□□□ -1.63
MSH2-202ENST00000406134 TPRXLQ17RH7 258 aa4.82□□□□□ -1.64
MSH2-202ENST00000406134 KRTAP12-2P59991 146 aa4.8□□□□□ -1.64
MSH2-202ENST00000406134 J3QL48 77 aa4.8□□□□□ -1.64
MSH2-202ENST00000406134 C10orf95Q9H7T3 257 aa4.79□□□□□ -1.64
MSH2-202ENST00000406134 A0A0D9SG42 100 aa4.79□□□□□ -1.64
MSH2-202ENST00000406134 KRTAP15-1Q3LI76 137 aa4.78□□□□□ -1.64
MSH2-202ENST00000406134 FLGP20930 4061 aaPredicted RBP4.77□□□□□ -1.65
MSH2-202ENST00000406134 KRTAP12-1P59990 96 aa4.76□□□□□ -1.65
MSH2-202ENST00000406134 KRTAP4-1Q9BYQ7 146 aa4.74□□□□□ -1.65
MSH2-202ENST00000406134 HERC2O95714 4834 aa4.74□□□□□ -1.65
MSH2-202ENST00000406134 MUC2Q02817 5179 aa4.74□□□□□ -1.65
MSH2-202ENST00000406134 KRTAP19-2Q3LHN2 52 aa4.73□□□□□ -1.65
MSH2-202ENST00000406134 BIRC6Q9NR09 4857 aa4.7□□□□□ -1.66
MSH2-202ENST00000406134 LORP23490 312 aaPredicted RBP4.67□□□□□ -1.66
MSH2-202ENST00000406134 PCLOQ9Y6V0 5065 aa4.66□□□□□ -1.66
MSH2-202ENST00000406134 M0QZ58 72 aa4.62□□□□□ -1.67
MSH2-202ENST00000406134 HERC1Q15751 4861 aa4.59□□□□□ -1.67
MSH2-202ENST00000406134 SEC61BP60468 96 aaKnown RBP4.58□□□□□ -1.68
MSH2-202ENST00000406134 HMCN2Q8NDA2 5059 aa4.57□□□□□ -1.68
MSH2-202ENST00000406134 FAT4Q6V0I7 4981 aa4.49□□□□□ -1.69
MSH2-202ENST00000406134 R4GN34 69 aa4.48□□□□□ -1.69
MSH2-202ENST00000406134 PLAC4Q8WY50 150 aa4.42□□□□□ -1.7
MSH2-202ENST00000406134 LCE2CQ5TA81 110 aa4.4□□□□□ -1.71
MSH2-202ENST00000406134 M0R2T5 61 aa4.39□□□□□ -1.71
MSH2-202ENST00000406134 RNF213Q63HN8 5207 aa4.34□□□□□ -1.71
MSH2-202ENST00000406134 UBR4Q5T4S7 5183 aa4.33□□□□□ -1.72
MSH2-202ENST00000406134 CAMK2N1Q7Z7J9 78 aa4.26□□□□□ -1.73
MSH2-202ENST00000406134 KRTAP19-1Q8IUB9 90 aa4.25□□□□□ -1.73
MSH2-202ENST00000406134 SPRR2GQ9BYE4 73 aa4.22□□□□□ -1.73
MSH2-202ENST00000406134 MT1HP80294 61 aa4.2□□□□□ -1.74
MSH2-202ENST00000406134 PP632Q6XCG6 107 aa4.17□□□□□ -1.74
MSH2-202ENST00000406134 MT1FP04733 61 aa4.15□□□□□ -1.74
MSH2-202ENST00000406134 KRTAP9-8Q9BYQ0 159 aa4.15□□□□□ -1.75
MSH2-202ENST00000406134 MT2AP02795 61 aa4.13□□□□□ -1.75
MSH2-202ENST00000406134 KRTAP23-1A1A580 65 aa4.12□□□□□ -1.75
MSH2-202ENST00000406134 PRO2289Q9P1D8 64 aa4.09□□□□□ -1.75
MSH2-202ENST00000406134 SPRR5A0A1B0GTR4 108 aa4.09□□□□□ -1.76
MSH2-202ENST00000406134 TNP1P09430 55 aa4.09□□□□□ -1.76
MSH2-202ENST00000406134 KRTAP19-8Q3LI54 63 aa4.04□□□□□ -1.76
MSH2-202ENST00000406134 MT1BP07438 61 aa4.03□□□□□ -1.76
MSH2-202ENST00000406134 LCE3AQ5TA76 89 aa4.01□□□□□ -1.77
MSH2-202ENST00000406134 KRTAP10-10P60014 251 aa4.01□□□□□ -1.77
MSH2-202ENST00000406134 KRTAP10-5P60370 271 aa4.01□□□□□ -1.77
MSH2-202ENST00000406134 MT1XP80297 61 aa4□□□□□ -1.77
MSH2-202ENST00000406134 KRTAP9-3Q9BYQ3 159 aa3.96□□□□□ -1.78
MSH2-202ENST00000406134 KRTAP8-1Q8IUC2 63 aa3.91□□□□□ -1.78
MSH2-202ENST00000406134 FSIP2Q5CZC0 6907 aa3.9□□□□□ -1.79
MSH2-202ENST00000406134 KRTAP10-7P60409 375 aaPredicted RBP3.88□□□□□ -1.79
MSH2-202ENST00000406134 INE1O15225 51 aa3.88□□□□□ -1.79
MSH2-202ENST00000406134 USH2AO75445 5202 aa3.88□□□□□ -1.79
MSH2-202ENST00000406134 KMT2DO14686 5537 aa3.84□□□□□ -1.79
MSH2-202ENST00000406134 LCE2BO14633 110 aa3.82□□□□□ -1.8
MSH2-202ENST00000406134 KRTAP10-12P60413 245 aa3.8□□□□□ -1.8
MSH2-202ENST00000406134 KRTAP12-3P60328 96 aa3.76□□□□□ -1.81
MSH2-202ENST00000406134 LCE2AQ5TA79 106 aaPredicted RBP3.75□□□□□ -1.81
MSH2-202ENST00000406134 KRTAP19-5Q3LI72 72 aa3.68□□□□□ -1.82
MSH2-202ENST00000406134 SSPOA2VEC9 5147 aa3.66□□□□□ -1.82
MSH2-202ENST00000406134 KRTAP4-8A0A0G2JLE6 195 aa3.64□□□□□ -1.83
MSH2-202ENST00000406134 KRTAP4-8Q9BYQ9 185 aa3.64□□□□□ -1.83
MSH2-202ENST00000406134 KRTAP9-6A8MVA2 160 aa3.59□□□□□ -1.84
MSH2-202ENST00000406134 LCE3CQ5T5A8 94 aa3.58□□□□□ -1.84
MSH2-202ENST00000406134 KRTAP19-7Q3SYF9 63 aa3.58□□□□□ -1.84
MSH2-202ENST00000406134 KRTAP4-7Q9BYR0 210 aa3.5□□□□□ -1.85
MSH2-202ENST00000406134 MT1EP04732 61 aa3.44□□□□□ -1.86
MSH2-202ENST00000406134 MT1LQ93083 61 aa3.43□□□□□ -1.86
MSH2-202ENST00000406134 FCGBPQ9Y6R7 5405 aaPredicted RBP3.41□□□□□ -1.86
MSH2-202ENST00000406134 KRTAP2-3P0C7H8 128 aa3.4□□□□□ -1.86
MSH2-202ENST00000406134 KRTAP2-4Q9BYR9 128 aa3.4□□□□□ -1.86
MSH2-202ENST00000406134 KRTAP2-1Q9BYU5 128 aa3.4□□□□□ -1.86
MSH2-202ENST00000406134 KRTAP19-6Q3LI70 58 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms