RNA–Protein interactions for RNA: ENST00000395860.6

VCPKMT-202, Transcript of valosin containing protein lysine methyltransferase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VCPKMT, Length 1,761 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCPKMT-202ENST00000395860 RPS28P62857 69 aaKnown RBP10.08□□□□□ -0.8
VCPKMT-202ENST00000395860 LCA10Q71F78 164 aa10.07□□□□□ -0.8
VCPKMT-202ENST00000395860 LCE2CQ5TA81 110 aa10.01□□□□□ -0.81
VCPKMT-202ENST00000395860 SPTSSBQ8NFR3 76 aa10□□□□□ -0.81
VCPKMT-202ENST00000395860 KRTAP3-3Q9BYR6 98 aa9.99□□□□□ -0.81
VCPKMT-202ENST00000395860 SMIM26A0A096LP01 95 aa9.91□□□□□ -0.82
VCPKMT-202ENST00000395860 CSAG1Q6PB30 78 aa9.91□□□□□ -0.82
VCPKMT-202ENST00000395860 FLGP20930 4061 aaPredicted RBP9.85□□□□□ -0.83
VCPKMT-202ENST00000395860 MT1HP80294 61 aa9.85□□□□□ -0.83
VCPKMT-202ENST00000395860 FAT4Q6V0I7 4981 aa9.82□□□□□ -0.84
VCPKMT-202ENST00000395860 M0R2T5 61 aa9.78□□□□□ -0.84
VCPKMT-202ENST00000395860 Q1T7F1 81 aa9.76□□□□□ -0.85
VCPKMT-202ENST00000395860 V9GYY9 64 aa9.76□□□□□ -0.85
VCPKMT-202ENST00000395860 LINC01558Q9Y6Z2 57 aa9.75□□□□□ -0.85
VCPKMT-202ENST00000395860 A0A1B0GU69 56 aa9.7□□□□□ -0.86
VCPKMT-202ENST00000395860 SEC61GP60059 68 aa9.7□□□□□ -0.86
VCPKMT-202ENST00000395860 PRR15LQ9BU68 103 aa9.65□□□□□ -0.86
VCPKMT-202ENST00000395860 H0YAA0 97 aa9.64□□□□□ -0.87
VCPKMT-202ENST00000395860 ADM2Q7Z4H4 148 aa9.64□□□□□ -0.87
VCPKMT-202ENST00000395860 PSPHP1O15172 72 aa9.62□□□□□ -0.87
VCPKMT-202ENST00000395860 KRTAP3-2Q9BYR7 98 aa9.58□□□□□ -0.88
VCPKMT-202ENST00000395860 LCE2AQ5TA79 106 aaPredicted RBP9.57□□□□□ -0.88
VCPKMT-202ENST00000395860 KRTAP10-6P60371 365 aaPredicted RBP9.55□□□□□ -0.88
VCPKMT-202ENST00000395860 P0C880 135 aa9.54□□□□□ -0.88
VCPKMT-202ENST00000395860 Q5VV11 94 aa9.51□□□□□ -0.89
VCPKMT-202ENST00000395860 LORP23490 312 aaPredicted RBP9.45□□□□□ -0.9
VCPKMT-202ENST00000395860 KRTAP9-8Q9BYQ0 159 aa9.45□□□□□ -0.9
VCPKMT-202ENST00000395860 A0A1B0GU33 70 aa9.44□□□□□ -0.9
VCPKMT-202ENST00000395860 MT2AP02795 61 aa9.41□□□□□ -0.9
VCPKMT-202ENST00000395860 UQCR11O14957 56 aa9.36□□□□□ -0.91
VCPKMT-202ENST00000395860 MT1FP04733 61 aa9.35□□□□□ -0.91
VCPKMT-202ENST00000395860 KRTAP10-10P60014 251 aa9.35□□□□□ -0.91
VCPKMT-202ENST00000395860 A6NED7 52 aa9.33□□□□□ -0.92
VCPKMT-202ENST00000395860 R4GN34 69 aa9.32□□□□□ -0.92
VCPKMT-202ENST00000395860 CRIPTQ9P021 101 aa9.3□□□□□ -0.92
VCPKMT-202ENST00000395860 M0QZ58 72 aa9.29□□□□□ -0.92
VCPKMT-202ENST00000395860 SPATA8Q6RVD6 105 aa9.29□□□□□ -0.92
VCPKMT-202ENST00000395860 KRTAP13-4Q3LI77 160 aa9.28□□□□□ -0.92
VCPKMT-202ENST00000395860 MIR22HGQ0VDD5 57 aa9.24□□□□□ -0.93
VCPKMT-202ENST00000395860 PRO0628Q9UI54 55 aa9.23□□□□□ -0.93
VCPKMT-202ENST00000395860 LINC01554Q52M75 96 aa9.14□□□□□ -0.95
VCPKMT-202ENST00000395860 A0A0D9SG42 100 aa9.13□□□□□ -0.95
VCPKMT-202ENST00000395860 A8MU10 97 aa9.13□□□□□ -0.95
VCPKMT-202ENST00000395860 SPRR2GQ9BYE4 73 aa9.13□□□□□ -0.95
VCPKMT-202ENST00000395860 CDC42SE1Q9NRR8 79 aa9.13□□□□□ -0.95
VCPKMT-202ENST00000395860 KRTAP19-1Q8IUB9 90 aa9.11□□□□□ -0.95
VCPKMT-202ENST00000395860 KRTAP9-3Q9BYQ3 159 aa9.11□□□□□ -0.95
VCPKMT-202ENST00000395860 BRK1Q8WUW1 75 aa9.1□□□□□ -0.95
VCPKMT-202ENST00000395860 A6NN06 94 aa8.94□□□□□ -0.98
VCPKMT-202ENST00000395860 SPINT4Q6UDR6 99 aa8.94□□□□□ -0.98
VCPKMT-202ENST00000395860 KRTAP12-1P59990 96 aa8.92□□□□□ -0.98
VCPKMT-202ENST00000395860 KRTAP19-8Q3LI54 63 aa8.91□□□□□ -0.98
VCPKMT-202ENST00000395860 KRTAP12-2P59991 146 aa8.89□□□□□ -0.99
VCPKMT-202ENST00000395860 LCE2BO14633 110 aa8.89□□□□□ -0.99
VCPKMT-202ENST00000395860 K7ERS5 55 aa8.87□□□□□ -0.99
VCPKMT-202ENST00000395860 PLAC4Q8WY50 150 aa8.84□□□□□ -1
VCPKMT-202ENST00000395860 MT1BP07438 61 aa8.81□□□□□ -1
VCPKMT-202ENST00000395860 LCE2DQ5TA82 110 aaPredicted RBP8.8□□□□□ -1
VCPKMT-202ENST00000395860 CAMK2N1Q7Z7J9 78 aa8.71□□□□□ -1.01
VCPKMT-202ENST00000395860 PMAIP1Q13794 54 aa8.63□□□□□ -1.03
VCPKMT-202ENST00000395860 USH2AO75445 5202 aa8.59□□□□□ -1.03
VCPKMT-202ENST00000395860 KRTAP9-2Q9BYQ4 174 aa8.53□□□□□ -1.04
VCPKMT-202ENST00000395860 MT1XP80297 61 aa8.48□□□□□ -1.05
VCPKMT-202ENST00000395860 KRTAP10-5P60370 271 aa8.47□□□□□ -1.05
VCPKMT-202ENST00000395860 C10orf95Q9H7T3 257 aa8.45□□□□□ -1.06
VCPKMT-202ENST00000395860 PRO2289Q9P1D8 64 aa8.45□□□□□ -1.06
VCPKMT-202ENST00000395860 ROMO1P60602 79 aa8.45□□□□□ -1.06
VCPKMT-202ENST00000395860 KTN1-AS1Q86SY8 53 aa8.44□□□□□ -1.06
VCPKMT-202ENST00000395860 KRTAP19-6Q3LI70 58 aa8.39□□□□□ -1.07
VCPKMT-202ENST00000395860 FSIP2Q5CZC0 6907 aa8.36□□□□□ -1.07
VCPKMT-202ENST00000395860 SSPOA2VEC9 5147 aa8.36□□□□□ -1.07
VCPKMT-202ENST00000395860 TNP1P09430 55 aa8.25□□□□□ -1.09
VCPKMT-202ENST00000395860 KRTAP25-1Q3LHN0 102 aa8.21□□□□□ -1.1
VCPKMT-202ENST00000395860 CRCT1Q9UGL9 99 aa8.2□□□□□ -1.1
VCPKMT-202ENST00000395860 KRTAP10-7P60409 375 aaPredicted RBP8.15□□□□□ -1.11
VCPKMT-202ENST00000395860 KRTAP10-12P60413 245 aa8.05□□□□□ -1.12
VCPKMT-202ENST00000395860 PRAC1Q96KF2 57 aa8.05□□□□□ -1.12
VCPKMT-202ENST00000395860 FCGBPQ9Y6R7 5405 aaPredicted RBP8.02□□□□□ -1.13
VCPKMT-202ENST00000395860 KRTAP9-6A0A140TA67 174 aa7.92□□□□□ -1.14
VCPKMT-202ENST00000395860 LCE3AQ5TA76 89 aa7.92□□□□□ -1.14
VCPKMT-202ENST00000395860 KRTAP23-1A1A580 65 aa7.92□□□□□ -1.14
VCPKMT-202ENST00000395860 PP632Q6XCG6 107 aa7.89□□□□□ -1.15
VCPKMT-202ENST00000395860 KRTAP4-8A0A0G2JLE6 195 aa7.87□□□□□ -1.15
VCPKMT-202ENST00000395860 KRTAP4-8Q9BYQ9 185 aa7.87□□□□□ -1.15
VCPKMT-202ENST00000395860 KMT2DO14686 5537 aa7.77□□□□□ -1.17
VCPKMT-202ENST00000395860 LOC100996750A0A140TA64 210 aa7.75□□□□□ -1.17
VCPKMT-202ENST00000395860 KRTAP4-6Q9BYQ5 205 aa7.75□□□□□ -1.17
VCPKMT-202ENST00000395860 KRTAP8-1Q8IUC2 63 aa7.73□□□□□ -1.17
VCPKMT-202ENST00000395860 MACF1Q9UPN3 7388 aaKnown RBP7.68□□□□□ -1.18
VCPKMT-202ENST00000395860 KRTAP19-5Q3LI72 72 aa7.64□□□□□ -1.19
VCPKMT-202ENST00000395860 KRTAP12-3P60328 96 aa7.61□□□□□ -1.19
VCPKMT-202ENST00000395860 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.59□□□□□ -1.19
VCPKMT-202ENST00000395860 KRTAP19-7Q3SYF9 63 aa7.56□□□□□ -1.2
VCPKMT-202ENST00000395860 SPRR2FQ96RM1 72 aa7.46□□□□□ -1.21
VCPKMT-202ENST00000395860 MT1EP04732 61 aa7.45□□□□□ -1.22
VCPKMT-202ENST00000395860 SYNE2Q8WXH0 6885 aaKnown RBP7.45□□□□□ -1.22
VCPKMT-202ENST00000395860 KRTAP15-1Q3LI76 137 aa7.41□□□□□ -1.22
VCPKMT-202ENST00000395860 KRTAP5-9P26371 169 aa7.41□□□□□ -1.22
VCPKMT-202ENST00000395860 KRTAP6-3Q3LI67 103 aa7.37□□□□□ -1.23
VCPKMT-202ENST00000395860 MT1LQ93083 61 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 285.5 ms