RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 KRTAP9-8Q9BYQ0 159 aa3.44□□□□□ -1.86
LIMA1-202ENST00000394943 H1FX-AS1Q4G0G2 97 aa3.43□□□□□ -1.86
LIMA1-202ENST00000394943 KRTAP9-6A0A140TA67 174 aa3.43□□□□□ -1.86
LIMA1-202ENST00000394943 TMEM258P61165 79 aa3.43□□□□□ -1.86
LIMA1-202ENST00000394943 LINC00208Q96KT6 92 aa3.43□□□□□ -1.86
LIMA1-202ENST00000394943 IGKV2D-30A0A075B6S6 120 aa3.42□□□□□ -1.86
LIMA1-202ENST00000394943 A8MUN3 132 aa3.42□□□□□ -1.86
LIMA1-202ENST00000394943 H0Y9P7 68 aa3.41□□□□□ -1.86
LIMA1-202ENST00000394943 MP68P56378 58 aa3.4□□□□□ -1.86
LIMA1-202ENST00000394943 KRTAP4-12Q9BQ66 201 aa3.4□□□□□ -1.86
LIMA1-202ENST00000394943 KLKP1Q107X0 134 aa3.4□□□□□ -1.87
LIMA1-202ENST00000394943 H3BS24 57 aa3.38□□□□□ -1.87
LIMA1-202ENST00000394943 C1orf64Q8NEQ6 169 aa3.37□□□□□ -1.87
LIMA1-202ENST00000394943 CHKB-CPT1BH3BT56 60 aa3.37□□□□□ -1.87
LIMA1-202ENST00000394943 H0YAA0 97 aa3.37□□□□□ -1.87
LIMA1-202ENST00000394943 DMAC1Q96GE9 116 aa3.37□□□□□ -1.87
LIMA1-202ENST00000394943 SPANXA2-OT1Q8N9U9 137 aa3.36□□□□□ -1.87
LIMA1-202ENST00000394943 SMIM26A0A096LP01 95 aa3.35□□□□□ -1.87
LIMA1-202ENST00000394943 MT2AP02795 61 aa3.35□□□□□ -1.87
LIMA1-202ENST00000394943 A6NED7 52 aa3.35□□□□□ -1.87
LIMA1-202ENST00000394943 SERP1Q9Y6X1 66 aa3.34□□□□□ -1.87
LIMA1-202ENST00000394943 H7BZZ5 65 aa3.34□□□□□ -1.88
LIMA1-202ENST00000394943 PMAIP1Q13794 54 aa3.34□□□□□ -1.88
LIMA1-202ENST00000394943 PRR15LQ9BU68 103 aa3.33□□□□□ -1.88
LIMA1-202ENST00000394943 KRTAP9-3Q9BYQ3 159 aa3.33□□□□□ -1.88
LIMA1-202ENST00000394943 KRTAP4-8A0A0G2JLE6 195 aa3.32□□□□□ -1.88
LIMA1-202ENST00000394943 MT1FP04733 61 aa3.31□□□□□ -1.88
LIMA1-202ENST00000394943 LCA10Q71F78 164 aa3.31□□□□□ -1.88
LIMA1-202ENST00000394943 KRTAP9-9Q9BYP9 154 aa3.31□□□□□ -1.88
LIMA1-202ENST00000394943 KRTAP9-4Q9BYQ2 154 aa3.31□□□□□ -1.88
LIMA1-202ENST00000394943 S4R3F8 94 aa3.3□□□□□ -1.88
LIMA1-202ENST00000394943 V9GYY9 64 aa3.3□□□□□ -1.88
LIMA1-202ENST00000394943 NDUFC1O43677 76 aa3.29□□□□□ -1.88
LIMA1-202ENST00000394943 RPS28P62857 69 aaKnown RBP3.28□□□□□ -1.88
LIMA1-202ENST00000394943 CRCT1Q9UGL9 99 aa3.27□□□□□ -1.89
LIMA1-202ENST00000394943 PRO0628Q9UI54 55 aa3.27□□□□□ -1.89
LIMA1-202ENST00000394943 KRTAP4-7Q9BYR0 210 aa3.26□□□□□ -1.89
LIMA1-202ENST00000394943 SPRR2GQ9BYE4 73 aa3.26□□□□□ -1.89
LIMA1-202ENST00000394943 CRIPTQ9P021 101 aa3.25□□□□□ -1.89
LIMA1-202ENST00000394943 SEC61GP60059 68 aa3.24□□□□□ -1.89
LIMA1-202ENST00000394943 CSAG1Q6PB30 78 aa3.24□□□□□ -1.89
LIMA1-202ENST00000394943 KRTAP19-8Q3LI54 63 aa3.24□□□□□ -1.89
LIMA1-202ENST00000394943 ACYP2P14621 99 aa3.23□□□□□ -1.89
LIMA1-202ENST00000394943 KRTAP19-1Q8IUB9 90 aa3.23□□□□□ -1.89
LIMA1-202ENST00000394943 A8MU10 97 aa3.22□□□□□ -1.89
LIMA1-202ENST00000394943 M0R2T5 61 aa3.22□□□□□ -1.89
LIMA1-202ENST00000394943 LCE3BQ5TA77 95 aa3.22□□□□□ -1.89
LIMA1-202ENST00000394943 ATP5EP56381 51 aaPredicted RBP3.21□□□□□ -1.9
LIMA1-202ENST00000394943 COA5Q86WW8 74 aa3.18□□□□□ -1.9
LIMA1-202ENST00000394943 KRTAP19-6Q3LI70 58 aa3.17□□□□□ -1.9
LIMA1-202ENST00000394943 KRTAP10-10P60014 251 aa3.16□□□□□ -1.9
LIMA1-202ENST00000394943 USH2AO75445 5202 aa3.16□□□□□ -1.9
LIMA1-202ENST00000394943 KRTAP4-9Q9BYQ8 210 aa3.15□□□□□ -1.91
LIMA1-202ENST00000394943 SSPOA2VEC9 5147 aa3.15□□□□□ -1.91
LIMA1-202ENST00000394943 MT1BP07438 61 aa3.14□□□□□ -1.91
LIMA1-202ENST00000394943 LCE1DQ5T752 114 aa3.14□□□□□ -1.91
LIMA1-202ENST00000394943 A0A1B0GU69 56 aa3.13□□□□□ -1.91
LIMA1-202ENST00000394943 PRAC1Q96KF2 57 aa3.13□□□□□ -1.91
LIMA1-202ENST00000394943 LCE4AQ5TA78 99 aa3.12□□□□□ -1.91
LIMA1-202ENST00000394943 KRTAP4-2Q9BYR5 136 aa3.11□□□□□ -1.91
LIMA1-202ENST00000394943 A6NN06 94 aa3.09□□□□□ -1.91
LIMA1-202ENST00000394943 ADM2Q7Z4H4 148 aa3.08□□□□□ -1.92
LIMA1-202ENST00000394943 Q5VV11 94 aa3.08□□□□□ -1.92
LIMA1-202ENST00000394943 P0C880 135 aa3.07□□□□□ -1.92
LIMA1-202ENST00000394943 M0QZ58 72 aa3.06□□□□□ -1.92
LIMA1-202ENST00000394943 KRTAP10-5P60370 271 aa3.05□□□□□ -1.92
LIMA1-202ENST00000394943 A0A0D9SG42 100 aa3.05□□□□□ -1.92
LIMA1-202ENST00000394943 Q1T7F1 81 aa3.05□□□□□ -1.92
LIMA1-202ENST00000394943 KRTAP9-7A8MTY7 169 aa3.04□□□□□ -1.92
LIMA1-202ENST00000394943 LINC01558Q9Y6Z2 57 aa3.03□□□□□ -1.93
LIMA1-202ENST00000394943 MIR22HGQ0VDD5 57 aa3.02□□□□□ -1.93
LIMA1-202ENST00000394943 KTN1-AS1Q86SY8 53 aa3.01□□□□□ -1.93
LIMA1-202ENST00000394943 UQCR11O14957 56 aa3□□□□□ -1.93
LIMA1-202ENST00000394943 K7ERS5 55 aa3□□□□□ -1.93
LIMA1-202ENST00000394943 KRTAP13-4Q3LI77 160 aa2.99□□□□□ -1.93
LIMA1-202ENST00000394943 CDC42SE1Q9NRR8 79 aa2.99□□□□□ -1.93
LIMA1-202ENST00000394943 KRTAP12-2P59991 146 aa2.98□□□□□ -1.93
LIMA1-202ENST00000394943 MT1XP80297 61 aa2.98□□□□□ -1.93
LIMA1-202ENST00000394943 LINC01554Q52M75 96 aa2.98□□□□□ -1.93
LIMA1-202ENST00000394943 FCGBPQ9Y6R7 5405 aaPredicted RBP2.97□□□□□ -1.93
LIMA1-202ENST00000394943 KRTAP4-11Q9BYQ6 195 aa2.96□□□□□ -1.94
LIMA1-202ENST00000394943 R4GN34 69 aa2.96□□□□□ -1.94
LIMA1-202ENST00000394943 SPATA8Q6RVD6 105 aa2.95□□□□□ -1.94
LIMA1-202ENST00000394943 SPINT4Q6UDR6 99 aa2.94□□□□□ -1.94
LIMA1-202ENST00000394943 KRTAP6-3Q3LI67 103 aa2.92□□□□□ -1.94
LIMA1-202ENST00000394943 A0A1B0GU33 70 aa2.91□□□□□ -1.94
LIMA1-202ENST00000394943 KRTAP10-12P60413 245 aa2.9□□□□□ -1.94
LIMA1-202ENST00000394943 FSIP2Q5CZC0 6907 aa2.89□□□□□ -1.95
LIMA1-202ENST00000394943 KRTAP12-1P59990 96 aa2.88□□□□□ -1.95
LIMA1-202ENST00000394943 PRO2289Q9P1D8 64 aa2.88□□□□□ -1.95
LIMA1-202ENST00000394943 KRTAP5-9P26371 169 aa2.88□□□□□ -1.95
LIMA1-202ENST00000394943 PLAC4Q8WY50 150 aa2.88□□□□□ -1.95
LIMA1-202ENST00000394943 KRTAP5-3Q6L8H2 238 aa2.88□□□□□ -1.95
LIMA1-202ENST00000394943 A0A0A0MQY5 61 aa2.86□□□□□ -1.95
LIMA1-202ENST00000394943 C10orf95Q9H7T3 257 aa2.79□□□□□ -1.96
LIMA1-202ENST00000394943 KRTAP10-7P60409 375 aaPredicted RBP2.78□□□□□ -1.96
LIMA1-202ENST00000394943 LCE5AQ5TCM9 118 aa2.77□□□□□ -1.97
LIMA1-202ENST00000394943 MACF1Q9UPN3 7388 aaKnown RBP2.75□□□□□ -1.97
LIMA1-202ENST00000394943 KRTAP19-4Q3LI73 84 aa2.74□□□□□ -1.97
LIMA1-202ENST00000394943 KRTAP23-1A1A580 65 aa2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms