RNA–Protein interactions for RNA: ENST00000371937.8

ATPAF1-202, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ATPAF1, Length 1,827 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-202ENST00000371937 LCA10Q71F78 164 aa13.07□□□□□ -0.32
ATPAF1-202ENST00000371937 LINC01558Q9Y6Z2 57 aa13.05□□□□□ -0.32
ATPAF1-202ENST00000371937 MUC2Q02817 5179 aa13.01□□□□□ -0.33
ATPAF1-202ENST00000371937 KRTAP3-3Q9BYR6 98 aa12.99□□□□□ -0.33
ATPAF1-202ENST00000371937 KRTAP19-2Q3LHN2 52 aa12.97□□□□□ -0.33
ATPAF1-202ENST00000371937 UBR4Q5T4S7 5183 aa12.94□□□□□ -0.34
ATPAF1-202ENST00000371937 PRR15LQ9BU68 103 aa12.92□□□□□ -0.34
ATPAF1-202ENST00000371937 PSPHP1O15172 72 aa12.92□□□□□ -0.34
ATPAF1-202ENST00000371937 A0A1B0GU69 56 aa12.88□□□□□ -0.35
ATPAF1-202ENST00000371937 CSAG1Q6PB30 78 aa12.85□□□□□ -0.35
ATPAF1-202ENST00000371937 SEC61GP60059 68 aa12.84□□□□□ -0.35
ATPAF1-202ENST00000371937 RNF213Q63HN8 5207 aa12.84□□□□□ -0.35
ATPAF1-202ENST00000371937 Q5VV11 94 aa12.79□□□□□ -0.36
ATPAF1-202ENST00000371937 FLGP20930 4061 aaPredicted RBP12.69□□□□□ -0.38
ATPAF1-202ENST00000371937 LCE2CQ5TA81 110 aa12.68□□□□□ -0.38
ATPAF1-202ENST00000371937 BRK1Q8WUW1 75 aa12.6□□□□□ -0.39
ATPAF1-202ENST00000371937 PRO0628Q9UI54 55 aa12.57□□□□□ -0.4
ATPAF1-202ENST00000371937 H0YAA0 97 aa12.56□□□□□ -0.4
ATPAF1-202ENST00000371937 A6NED7 52 aa12.55□□□□□ -0.4
ATPAF1-202ENST00000371937 KRTAP3-2Q9BYR7 98 aa12.53□□□□□ -0.4
ATPAF1-202ENST00000371937 ADM2Q7Z4H4 148 aa12.53□□□□□ -0.4
ATPAF1-202ENST00000371937 KRTAP10-6P60371 365 aaPredicted RBP12.52□□□□□ -0.41
ATPAF1-202ENST00000371937 SVIPQ8NHG7 77 aa12.51□□□□□ -0.41
ATPAF1-202ENST00000371937 UQCR11O14957 56 aa12.49□□□□□ -0.41
ATPAF1-202ENST00000371937 A0A1B0GU33 70 aa12.48□□□□□ -0.41
ATPAF1-202ENST00000371937 FAT4Q6V0I7 4981 aa12.47□□□□□ -0.41
ATPAF1-202ENST00000371937 MT1HP80294 61 aa12.44□□□□□ -0.42
ATPAF1-202ENST00000371937 P0C880 135 aa12.43□□□□□ -0.42
ATPAF1-202ENST00000371937 M0R2T5 61 aa12.39□□□□□ -0.43
ATPAF1-202ENST00000371937 MIR22HGQ0VDD5 57 aa12.33□□□□□ -0.44
ATPAF1-202ENST00000371937 CDC42SE1Q9NRR8 79 aa12.32□□□□□ -0.44
ATPAF1-202ENST00000371937 SPATA8Q6RVD6 105 aa12.3□□□□□ -0.44
ATPAF1-202ENST00000371937 A8MU10 97 aa12.22□□□□□ -0.45
ATPAF1-202ENST00000371937 M0QZ58 72 aa12.18□□□□□ -0.46
ATPAF1-202ENST00000371937 KRTAP13-4Q3LI77 160 aa12.16□□□□□ -0.46
ATPAF1-202ENST00000371937 R4GN34 69 aa12.11□□□□□ -0.47
ATPAF1-202ENST00000371937 LORP23490 312 aaPredicted RBP12.07□□□□□ -0.48
ATPAF1-202ENST00000371937 CRIPTQ9P021 101 aa12.04□□□□□ -0.48
ATPAF1-202ENST00000371937 KRTAP9-8Q9BYQ0 159 aa11.98□□□□□ -0.49
ATPAF1-202ENST00000371937 A0A0D9SG42 100 aa11.97□□□□□ -0.49
ATPAF1-202ENST00000371937 LCE2AQ5TA79 106 aaPredicted RBP11.95□□□□□ -0.5
ATPAF1-202ENST00000371937 MT2AP02795 61 aa11.95□□□□□ -0.5
ATPAF1-202ENST00000371937 PMAIP1Q13794 54 aa11.93□□□□□ -0.5
ATPAF1-202ENST00000371937 KRTAP10-10P60014 251 aa11.89□□□□□ -0.51
ATPAF1-202ENST00000371937 MT1FP04733 61 aa11.87□□□□□ -0.51
ATPAF1-202ENST00000371937 LINC01554Q52M75 96 aa11.86□□□□□ -0.51
ATPAF1-202ENST00000371937 K7ERS5 55 aa11.83□□□□□ -0.51
ATPAF1-202ENST00000371937 A6NN06 94 aa11.81□□□□□ -0.52
ATPAF1-202ENST00000371937 SPRR2GQ9BYE4 73 aa11.74□□□□□ -0.53
ATPAF1-202ENST00000371937 KRTAP12-1P59990 96 aa11.72□□□□□ -0.53
ATPAF1-202ENST00000371937 SPINT4Q6UDR6 99 aa11.71□□□□□ -0.54
ATPAF1-202ENST00000371937 KRTAP12-2P59991 146 aa11.68□□□□□ -0.54
ATPAF1-202ENST00000371937 KRTAP19-1Q8IUB9 90 aa11.67□□□□□ -0.54
ATPAF1-202ENST00000371937 KTN1-AS1Q86SY8 53 aa11.58□□□□□ -0.56
ATPAF1-202ENST00000371937 KRTAP9-3Q9BYQ3 159 aa11.56□□□□□ -0.56
ATPAF1-202ENST00000371937 KRTAP19-8Q3LI54 63 aa11.42□□□□□ -0.58
ATPAF1-202ENST00000371937 PLAC4Q8WY50 150 aa11.39□□□□□ -0.59
ATPAF1-202ENST00000371937 CAMK2N1Q7Z7J9 78 aa11.35□□□□□ -0.59
ATPAF1-202ENST00000371937 ROMO1P60602 79 aa11.29□□□□□ -0.6
ATPAF1-202ENST00000371937 MT1BP07438 61 aa11.24□□□□□ -0.61
ATPAF1-202ENST00000371937 LCE2BO14633 110 aa11.21□□□□□ -0.61
ATPAF1-202ENST00000371937 PRAC1Q96KF2 57 aa11.11□□□□□ -0.63
ATPAF1-202ENST00000371937 C10orf95Q9H7T3 257 aa11.09□□□□□ -0.63
ATPAF1-202ENST00000371937 USH2AO75445 5202 aa10.9□□□□□ -0.66
ATPAF1-202ENST00000371937 MT1XP80297 61 aa10.88□□□□□ -0.67
ATPAF1-202ENST00000371937 LCE2DQ5TA82 110 aaPredicted RBP10.88□□□□□ -0.67
ATPAF1-202ENST00000371937 KRTAP10-5P60370 271 aa10.87□□□□□ -0.67
ATPAF1-202ENST00000371937 KRTAP25-1Q3LHN0 102 aa10.85□□□□□ -0.67
ATPAF1-202ENST00000371937 PRO2289Q9P1D8 64 aa10.85□□□□□ -0.67
ATPAF1-202ENST00000371937 TNP1P09430 55 aa10.8□□□□□ -0.68
ATPAF1-202ENST00000371937 KRTAP19-6Q3LI70 58 aa10.56□□□□□ -0.72
ATPAF1-202ENST00000371937 SSPOA2VEC9 5147 aa10.55□□□□□ -0.72
ATPAF1-202ENST00000371937 PP632Q6XCG6 107 aa10.51□□□□□ -0.73
ATPAF1-202ENST00000371937 KRTAP23-1A1A580 65 aa10.49□□□□□ -0.73
ATPAF1-202ENST00000371937 FSIP2Q5CZC0 6907 aa10.47□□□□□ -0.73
ATPAF1-202ENST00000371937 KRTAP10-7P60409 375 aaPredicted RBP10.44□□□□□ -0.74
ATPAF1-202ENST00000371937 KRTAP9-2Q9BYQ4 174 aa10.42□□□□□ -0.74
ATPAF1-202ENST00000371937 KRTAP10-12P60413 245 aa10.36□□□□□ -0.75
ATPAF1-202ENST00000371937 LCE3AQ5TA76 89 aa10.29□□□□□ -0.76
ATPAF1-202ENST00000371937 FCGBPQ9Y6R7 5405 aaPredicted RBP10.1□□□□□ -0.79
ATPAF1-202ENST00000371937 KRTAP8-1Q8IUC2 63 aa10.1□□□□□ -0.79
ATPAF1-202ENST00000371937 CRCT1Q9UGL9 99 aa10.08□□□□□ -0.8
ATPAF1-202ENST00000371937 KRTAP4-8A0A0G2JLE6 195 aa10.02□□□□□ -0.81
ATPAF1-202ENST00000371937 KRTAP4-8Q9BYQ9 185 aa10.02□□□□□ -0.81
ATPAF1-202ENST00000371937 KMT2DO14686 5537 aa9.95□□□□□ -0.82
ATPAF1-202ENST00000371937 KRTAP12-3P60328 96 aa9.91□□□□□ -0.82
ATPAF1-202ENST00000371937 KRTAP19-5Q3LI72 72 aa9.84□□□□□ -0.83
ATPAF1-202ENST00000371937 KRTAP15-1Q3LI76 137 aa9.72□□□□□ -0.85
ATPAF1-202ENST00000371937 KRTAP19-7Q3SYF9 63 aa9.7□□□□□ -0.86
ATPAF1-202ENST00000371937 MACF1Q9UPN3 7388 aaKnown RBP9.62□□□□□ -0.87
ATPAF1-202ENST00000371937 KRTAP9-6A0A140TA67 174 aa9.61□□□□□ -0.87
ATPAF1-202ENST00000371937 MT1EP04732 61 aa9.54□□□□□ -0.88
ATPAF1-202ENST00000371937 SPRR2FQ96RM1 72 aa9.38□□□□□ -0.91
ATPAF1-202ENST00000371937 MT1LQ93083 61 aa9.35□□□□□ -0.91
ATPAF1-202ENST00000371937 KRTAP19-4Q3LI73 84 aa9.35□□□□□ -0.91
ATPAF1-202ENST00000371937 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.31□□□□□ -0.92
ATPAF1-202ENST00000371937 SYNE2Q8WXH0 6885 aaKnown RBP9.3□□□□□ -0.92
ATPAF1-202ENST00000371937 KRTAP5-9P26371 169 aa9.28□□□□□ -0.92
ATPAF1-202ENST00000371937 LCE3CQ5T5A8 94 aa9.26□□□□□ -0.93
ATPAF1-202ENST00000371937 SPRR5A0A1B0GTR4 108 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms