RNA–Protein interactions for RNA: ENST00000371820.3

COL5A1-202, Transcript of collagen type V alpha 1 chain, humanhuman

TSL 2

Gene COL5A1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-202ENST00000371820 SPTSSBQ8NFR3 76 aa5.73□□□□□ -1.49
COL5A1-202ENST00000371820 SEC61BP60468 96 aaKnown RBP5.71□□□□□ -1.5
COL5A1-202ENST00000371820 LCA10Q71F78 164 aa5.71□□□□□ -1.5
COL5A1-202ENST00000371820 KTN1-AS1Q86SY8 53 aa5.7□□□□□ -1.5
COL5A1-202ENST00000371820 A0A1B0GU69 56 aa5.69□□□□□ -1.5
COL5A1-202ENST00000371820 KRTAP16-1A8MUX0 517 aa5.69□□□□□ -1.5
COL5A1-202ENST00000371820 KRTAP9-6A0A140TA67 174 aa5.68□□□□□ -1.5
COL5A1-202ENST00000371820 IGKV2D-30A0A075B6S6 120 aa5.66□□□□□ -1.5
COL5A1-202ENST00000371820 C7orf65Q6ZTY9 151 aa5.66□□□□□ -1.5
COL5A1-202ENST00000371820 UQCR11O14957 56 aa5.65□□□□□ -1.5
COL5A1-202ENST00000371820 SEC61GP60059 68 aa5.65□□□□□ -1.5
COL5A1-202ENST00000371820 XP32Q5T750 250 aa5.65□□□□□ -1.5
COL5A1-202ENST00000371820 A6NN06 94 aa5.63□□□□□ -1.51
COL5A1-202ENST00000371820 SPATA8Q6RVD6 105 aa5.63□□□□□ -1.51
COL5A1-202ENST00000371820 SPINK7P58062 85 aa5.62□□□□□ -1.51
COL5A1-202ENST00000371820 KRTAP4-1Q9BYQ7 146 aa5.6□□□□□ -1.51
COL5A1-202ENST00000371820 C9orf92A6NGG3 77 aa5.59□□□□□ -1.51
COL5A1-202ENST00000371820 MIR22HGQ0VDD5 57 aa5.57□□□□□ -1.52
COL5A1-202ENST00000371820 A8MUU9 505 aa5.55□□□□□ -1.52
COL5A1-202ENST00000371820 LCE2DQ5TA82 110 aaPredicted RBP5.55□□□□□ -1.52
COL5A1-202ENST00000371820 C20orf166-AS1Q96NR2 134 aa5.55□□□□□ -1.52
COL5A1-202ENST00000371820 FSIP2Q5CZC0 6907 aa5.53□□□□□ -1.52
COL5A1-202ENST00000371820 A8MU10 97 aa5.53□□□□□ -1.52
COL5A1-202ENST00000371820 RPL37P61927 97 aaKnown RBP5.52□□□□□ -1.53
COL5A1-202ENST00000371820 LCE2CQ5TA81 110 aa5.5□□□□□ -1.53
COL5A1-202ENST00000371820 KRTAP19-2Q3LHN2 52 aa5.48□□□□□ -1.53
COL5A1-202ENST00000371820 RBM12B-AS1Q9P1G2 102 aa5.47□□□□□ -1.53
COL5A1-202ENST00000371820 CRCT1Q9UGL9 99 aa5.47□□□□□ -1.53
COL5A1-202ENST00000371820 MT1HP80294 61 aa5.44□□□□□ -1.54
COL5A1-202ENST00000371820 K7ERS5 55 aa5.4□□□□□ -1.54
COL5A1-202ENST00000371820 COX6B2Q6YFQ2 88 aa5.4□□□□□ -1.54
COL5A1-202ENST00000371820 A0A1B0GU33 70 aa5.39□□□□□ -1.55
COL5A1-202ENST00000371820 LORP23490 312 aaPredicted RBP5.38□□□□□ -1.55
COL5A1-202ENST00000371820 KRTAP10-6P60371 365 aaPredicted RBP5.36□□□□□ -1.55
COL5A1-202ENST00000371820 H1FX-AS1Q4G0G2 97 aa5.34□□□□□ -1.55
COL5A1-202ENST00000371820 M0R2T5 61 aa5.33□□□□□ -1.56
COL5A1-202ENST00000371820 FLGP20930 4061 aaPredicted RBP5.32□□□□□ -1.56
COL5A1-202ENST00000371820 KRTAP3-1Q9BYR8 98 aa5.3□□□□□ -1.56
COL5A1-202ENST00000371820 LINC01554Q52M75 96 aa5.27□□□□□ -1.57
COL5A1-202ENST00000371820 H0YAA0 97 aa5.23□□□□□ -1.57
COL5A1-202ENST00000371820 PRAC1Q96KF2 57 aa5.2□□□□□ -1.58
COL5A1-202ENST00000371820 CSAG1Q6PB30 78 aa5.18□□□□□ -1.58
COL5A1-202ENST00000371820 S4R3F8 94 aa5.18□□□□□ -1.58
COL5A1-202ENST00000371820 ADM2Q7Z4H4 148 aa5.16□□□□□ -1.58
COL5A1-202ENST00000371820 KRTAP25-1Q3LHN0 102 aa5.14□□□□□ -1.59
COL5A1-202ENST00000371820 SSPOA2VEC9 5147 aa5.12□□□□□ -1.59
COL5A1-202ENST00000371820 KRTAP9-8Q9BYQ0 159 aa5.12□□□□□ -1.59
COL5A1-202ENST00000371820 USH2AO75445 5202 aa5.12□□□□□ -1.59
COL5A1-202ENST00000371820 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.11□□□□□ -1.59
COL5A1-202ENST00000371820 ROMO1P60602 79 aa5.11□□□□□ -1.59
COL5A1-202ENST00000371820 KRTAP9-7A8MTY7 169 aa5.09□□□□□ -1.59
COL5A1-202ENST00000371820 KRTAP3-3Q9BYR6 98 aa5.09□□□□□ -1.59
COL5A1-202ENST00000371820 M0QZ58 72 aa5.07□□□□□ -1.6
COL5A1-202ENST00000371820 MT2AP02795 61 aa5.03□□□□□ -1.6
COL5A1-202ENST00000371820 KRTAP3-2Q9BYR7 98 aa5.03□□□□□ -1.6
COL5A1-202ENST00000371820 FCGBPQ9Y6R7 5405 aaPredicted RBP5.01□□□□□ -1.61
COL5A1-202ENST00000371820 MT1FP04733 61 aa5□□□□□ -1.61
COL5A1-202ENST00000371820 LCE2BO14633 110 aa4.98□□□□□ -1.61
COL5A1-202ENST00000371820 KRTAP10-10P60014 251 aa4.98□□□□□ -1.61
COL5A1-202ENST00000371820 CRIPTQ9P021 101 aa4.98□□□□□ -1.61
COL5A1-202ENST00000371820 KRTAP19-1Q8IUB9 90 aa4.97□□□□□ -1.61
COL5A1-202ENST00000371820 KRTAP9-3Q9BYQ3 159 aa4.96□□□□□ -1.62
COL5A1-202ENST00000371820 MACF1Q9UPN3 7388 aaKnown RBP4.96□□□□□ -1.62
COL5A1-202ENST00000371820 SYNE2Q8WXH0 6885 aaKnown RBP4.94□□□□□ -1.62
COL5A1-202ENST00000371820 A0A0D9SG42 100 aa4.94□□□□□ -1.62
COL5A1-202ENST00000371820 H3BS24 57 aa4.93□□□□□ -1.62
COL5A1-202ENST00000371820 P0C880 135 aa4.92□□□□□ -1.62
COL5A1-202ENST00000371820 KRTAP13-4Q3LI77 160 aa4.91□□□□□ -1.62
COL5A1-202ENST00000371820 SPINT4Q6UDR6 99 aa4.86□□□□□ -1.63
COL5A1-202ENST00000371820 KRTAP12-1P59990 96 aa4.85□□□□□ -1.63
COL5A1-202ENST00000371820 KRTAP19-6Q3LI70 58 aa4.84□□□□□ -1.63
COL5A1-202ENST00000371820 R4GN34 69 aa4.82□□□□□ -1.64
COL5A1-202ENST00000371820 KRTAP12-2P59991 146 aa4.81□□□□□ -1.64
COL5A1-202ENST00000371820 KRTAP6-3Q3LI67 103 aa4.72□□□□□ -1.65
COL5A1-202ENST00000371820 PP632Q6XCG6 107 aa4.7□□□□□ -1.66
COL5A1-202ENST00000371820 NEBP20929 6669 aa4.68□□□□□ -1.66
COL5A1-202ENST00000371820 C10orf95Q9H7T3 257 aa4.65□□□□□ -1.67
COL5A1-202ENST00000371820 KRTAP15-1Q3LI76 137 aa4.63□□□□□ -1.67
COL5A1-202ENST00000371820 SPRR2GQ9BYE4 73 aa4.61□□□□□ -1.67
COL5A1-202ENST00000371820 A0A0A0MQY5 61 aa4.6□□□□□ -1.67
COL5A1-202ENST00000371820 KRTAP23-1A1A580 65 aa4.59□□□□□ -1.67
COL5A1-202ENST00000371820 KRTAP19-8Q3LI54 63 aa4.58□□□□□ -1.68
COL5A1-202ENST00000371820 CAMK2N1Q7Z7J9 78 aa4.58□□□□□ -1.68
COL5A1-202ENST00000371820 MT1BP07438 61 aa4.56□□□□□ -1.68
COL5A1-202ENST00000371820 MUC12Q9UKN1 5478 aa4.54□□□□□ -1.68
COL5A1-202ENST00000371820 PLAC4Q8WY50 150 aa4.52□□□□□ -1.69
COL5A1-202ENST00000371820 TNP1P09430 55 aa4.49□□□□□ -1.69
COL5A1-202ENST00000371820 KRTAP10-5P60370 271 aa4.48□□□□□ -1.69
COL5A1-202ENST00000371820 NDUFAF8A1L188 74 aa4.46□□□□□ -1.7
COL5A1-202ENST00000371820 KRTAP20-1Q3LI63 56 aa4.45□□□□□ -1.7
COL5A1-202ENST00000371820 KRTAP5-9P26371 169 aa4.44□□□□□ -1.7
COL5A1-202ENST00000371820 LUZP6Q538Z0 58 aa4.43□□□□□ -1.7
COL5A1-202ENST00000371820 KMT2DO14686 5537 aa4.41□□□□□ -1.7
COL5A1-202ENST00000371820 PRO2289Q9P1D8 64 aa4.39□□□□□ -1.71
COL5A1-202ENST00000371820 MDN1Q9NU22 5596 aa4.38□□□□□ -1.71
COL5A1-202ENST00000371820 KRTAP2-3P0C7H8 128 aa4.28□□□□□ -1.72
COL5A1-202ENST00000371820 KRTAP2-4Q9BYR9 128 aa4.28□□□□□ -1.72
COL5A1-202ENST00000371820 MT1XP80297 61 aa4.27□□□□□ -1.73
COL5A1-202ENST00000371820 SPRR2FQ96RM1 72 aa4.25□□□□□ -1.73
COL5A1-202ENST00000371820 SPRR2EP22531 72 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 125.8 ms