RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 COX6B2Q6YFQ2 88 aa10.08□□□□□ -0.8
CLN3-205ENST00000359984 RBM12B-AS1Q9P1G2 102 aa10.06□□□□□ -0.8
CLN3-205ENST00000359984 ACYP2P14621 99 aa10.06□□□□□ -0.8
CLN3-205ENST00000359984 KRTAP3-1Q9BYR8 98 aa10.06□□□□□ -0.8
CLN3-205ENST00000359984 KRTAP19-2Q3LHN2 52 aa10□□□□□ -0.81
CLN3-205ENST00000359984 A8MUN3 132 aa9.96□□□□□ -0.82
CLN3-205ENST00000359984 PSPHP1O15172 72 aa9.93□□□□□ -0.82
CLN3-205ENST00000359984 LINC01558Q9Y6Z2 57 aa9.91□□□□□ -0.82
CLN3-205ENST00000359984 H1FX-AS1Q4G0G2 97 aa9.91□□□□□ -0.82
CLN3-205ENST00000359984 Q5VV11 94 aa9.89□□□□□ -0.83
CLN3-205ENST00000359984 CHKB-CPT1BH3BT56 60 aa9.87□□□□□ -0.83
CLN3-205ENST00000359984 LCE2CQ5TA81 110 aa9.86□□□□□ -0.83
CLN3-205ENST00000359984 PRR15LQ9BU68 103 aa9.85□□□□□ -0.83
CLN3-205ENST00000359984 A6NN06 94 aa9.83□□□□□ -0.84
CLN3-205ENST00000359984 LCA10Q71F78 164 aa9.77□□□□□ -0.85
CLN3-205ENST00000359984 S4R3F8 94 aa9.77□□□□□ -0.85
CLN3-205ENST00000359984 FLGP20930 4061 aaPredicted RBP9.75□□□□□ -0.85
CLN3-205ENST00000359984 FAT4Q6V0I7 4981 aa9.75□□□□□ -0.85
CLN3-205ENST00000359984 A8MU10 97 aa9.72□□□□□ -0.85
CLN3-205ENST00000359984 KRTAP3-3Q9BYR6 98 aa9.71□□□□□ -0.85
CLN3-205ENST00000359984 CDC42SE1Q9NRR8 79 aa9.68□□□□□ -0.86
CLN3-205ENST00000359984 MT1HP80294 61 aa9.66□□□□□ -0.86
CLN3-205ENST00000359984 SPTSSBQ8NFR3 76 aa9.66□□□□□ -0.86
CLN3-205ENST00000359984 H3BS24 57 aa9.66□□□□□ -0.86
CLN3-205ENST00000359984 A0A1B0GU69 56 aa9.6□□□□□ -0.87
CLN3-205ENST00000359984 A6NED7 52 aa9.59□□□□□ -0.87
CLN3-205ENST00000359984 CSAG1Q6PB30 78 aa9.58□□□□□ -0.88
CLN3-205ENST00000359984 M0R2T5 61 aa9.54□□□□□ -0.88
CLN3-205ENST00000359984 LCE2AQ5TA79 106 aaPredicted RBP9.47□□□□□ -0.89
CLN3-205ENST00000359984 LINC01554Q52M75 96 aa9.45□□□□□ -0.9
CLN3-205ENST00000359984 SPATA8Q6RVD6 105 aa9.38□□□□□ -0.91
CLN3-205ENST00000359984 UQCR11O14957 56 aa9.37□□□□□ -0.91
CLN3-205ENST00000359984 KRTAP10-6P60371 365 aaPredicted RBP9.35□□□□□ -0.91
CLN3-205ENST00000359984 H0YAA0 97 aa9.34□□□□□ -0.91
CLN3-205ENST00000359984 ADM2Q7Z4H4 148 aa9.32□□□□□ -0.92
CLN3-205ENST00000359984 MIR22HGQ0VDD5 57 aa9.3□□□□□ -0.92
CLN3-205ENST00000359984 KRTAP3-2Q9BYR7 98 aa9.3□□□□□ -0.92
CLN3-205ENST00000359984 LORP23490 312 aaPredicted RBP9.3□□□□□ -0.92
CLN3-205ENST00000359984 KRTAP9-8Q9BYQ0 159 aa9.28□□□□□ -0.92
CLN3-205ENST00000359984 P0C880 135 aa9.25□□□□□ -0.93
CLN3-205ENST00000359984 PRAC1Q96KF2 57 aa9.24□□□□□ -0.93
CLN3-205ENST00000359984 MT2AP02795 61 aa9.23□□□□□ -0.93
CLN3-205ENST00000359984 A0A1B0GU33 70 aa9.22□□□□□ -0.93
CLN3-205ENST00000359984 MT1FP04733 61 aa9.17□□□□□ -0.94
CLN3-205ENST00000359984 KRTAP10-10P60014 251 aa9.15□□□□□ -0.95
CLN3-205ENST00000359984 CRIPTQ9P021 101 aa9.01□□□□□ -0.97
CLN3-205ENST00000359984 KRTAP13-4Q3LI77 160 aa9□□□□□ -0.97
CLN3-205ENST00000359984 R4GN34 69 aa8.99□□□□□ -0.97
CLN3-205ENST00000359984 M0QZ58 72 aa8.97□□□□□ -0.97
CLN3-205ENST00000359984 KRTAP9-3Q9BYQ3 159 aa8.96□□□□□ -0.97
CLN3-205ENST00000359984 KRTAP19-1Q8IUB9 90 aa8.92□□□□□ -0.98
CLN3-205ENST00000359984 SPRR2GQ9BYE4 73 aa8.91□□□□□ -0.98
CLN3-205ENST00000359984 ROMO1P60602 79 aa8.81□□□□□ -1
CLN3-205ENST00000359984 A0A0D9SG42 100 aa8.79□□□□□ -1
CLN3-205ENST00000359984 LCE2BO14633 110 aa8.75□□□□□ -1.01
CLN3-205ENST00000359984 K7ERS5 55 aa8.74□□□□□ -1.01
CLN3-205ENST00000359984 KRTAP19-8Q3LI54 63 aa8.72□□□□□ -1.01
CLN3-205ENST00000359984 KRTAP25-1Q3LHN0 102 aa8.7□□□□□ -1.02
CLN3-205ENST00000359984 LCE2DQ5TA82 110 aaPredicted RBP8.68□□□□□ -1.02
CLN3-205ENST00000359984 KRTAP12-1P59990 96 aa8.65□□□□□ -1.02
CLN3-205ENST00000359984 KRTAP12-2P59991 146 aa8.64□□□□□ -1.03
CLN3-205ENST00000359984 MT1BP07438 61 aa8.64□□□□□ -1.03
CLN3-205ENST00000359984 SPINT4Q6UDR6 99 aa8.58□□□□□ -1.04
CLN3-205ENST00000359984 USH2AO75445 5202 aa8.58□□□□□ -1.04
CLN3-205ENST00000359984 PLAC4Q8WY50 150 aa8.55□□□□□ -1.04
CLN3-205ENST00000359984 A0A0A0MQY5 61 aa8.49□□□□□ -1.05
CLN3-205ENST00000359984 KRTAP9-2Q9BYQ4 174 aa8.48□□□□□ -1.05
CLN3-205ENST00000359984 CAMK2N1Q7Z7J9 78 aa8.39□□□□□ -1.07
CLN3-205ENST00000359984 FSIP2Q5CZC0 6907 aa8.37□□□□□ -1.07
CLN3-205ENST00000359984 SSPOA2VEC9 5147 aa8.32□□□□□ -1.08
CLN3-205ENST00000359984 MT1XP80297 61 aa8.3□□□□□ -1.08
CLN3-205ENST00000359984 KRTAP10-5P60370 271 aa8.28□□□□□ -1.08
CLN3-205ENST00000359984 KRTAP19-6Q3LI70 58 aa8.26□□□□□ -1.09
CLN3-205ENST00000359984 PRO2289Q9P1D8 64 aa8.2□□□□□ -1.1
CLN3-205ENST00000359984 C10orf95Q9H7T3 257 aa8.18□□□□□ -1.1
CLN3-205ENST00000359984 KRTAP15-1Q3LI76 137 aa8.15□□□□□ -1.1
CLN3-205ENST00000359984 NDUFAF8A1L188 74 aa8.14□□□□□ -1.11
CLN3-205ENST00000359984 CRCT1Q9UGL9 99 aa8.14□□□□□ -1.11
CLN3-205ENST00000359984 FCGBPQ9Y6R7 5405 aaPredicted RBP8.03□□□□□ -1.12
CLN3-205ENST00000359984 KRTAP10-7P60409 375 aaPredicted RBP7.95□□□□□ -1.14
CLN3-205ENST00000359984 TNP1P09430 55 aa7.94□□□□□ -1.14
CLN3-205ENST00000359984 KRTAP9-6A0A140TA67 174 aa7.91□□□□□ -1.14
CLN3-205ENST00000359984 LUZP6Q538Z0 58 aa7.89□□□□□ -1.15
CLN3-205ENST00000359984 KRTAP10-12P60413 245 aa7.86□□□□□ -1.15
CLN3-205ENST00000359984 PP632Q6XCG6 107 aa7.75□□□□□ -1.17
CLN3-205ENST00000359984 KRTAP4-8A0A0G2JLE6 195 aa7.7□□□□□ -1.18
CLN3-205ENST00000359984 KRTAP4-8Q9BYQ9 185 aa7.7□□□□□ -1.18
CLN3-205ENST00000359984 KRTAP23-1A1A580 65 aa7.7□□□□□ -1.18
CLN3-205ENST00000359984 KMT2DO14686 5537 aa7.68□□□□□ -1.18
CLN3-205ENST00000359984 LCE3AQ5TA76 89 aa7.67□□□□□ -1.18
CLN3-205ENST00000359984 MACF1Q9UPN3 7388 aaKnown RBP7.66□□□□□ -1.18
CLN3-205ENST00000359984 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.54□□□□□ -1.2
CLN3-205ENST00000359984 KRTAP8-1Q8IUC2 63 aa7.54□□□□□ -1.2
CLN3-205ENST00000359984 KRTAP19-5Q3LI72 72 aa7.44□□□□□ -1.22
CLN3-205ENST00000359984 SYNE2Q8WXH0 6885 aaKnown RBP7.43□□□□□ -1.22
CLN3-205ENST00000359984 KRTAP19-7Q3SYF9 63 aa7.41□□□□□ -1.22
CLN3-205ENST00000359984 KRTAP12-3P60328 96 aa7.36□□□□□ -1.23
CLN3-205ENST00000359984 SPRR2FQ96RM1 72 aa7.32□□□□□ -1.24
CLN3-205ENST00000359984 KRTAP5-9P26371 169 aa7.31□□□□□ -1.24
CLN3-205ENST00000359984 KRTAP6-3Q3LI67 103 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms