RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 LCA10Q71F78 164 aa9.24□□□□□ -0.93
CLN3-204ENST00000357857 SPTSSBQ8NFR3 76 aa9.24□□□□□ -0.93
CLN3-204ENST00000357857 MUC2Q02817 5179 aa9.23□□□□□ -0.93
CLN3-204ENST00000357857 RNF213Q63HN8 5207 aa9.22□□□□□ -0.93
CLN3-204ENST00000357857 KRTAP3-3Q9BYR6 98 aa9.19□□□□□ -0.94
CLN3-204ENST00000357857 Q1T7F1 81 aa9.14□□□□□ -0.95
CLN3-204ENST00000357857 V9GYY9 64 aa9.12□□□□□ -0.95
CLN3-204ENST00000357857 LINC01558Q9Y6Z2 57 aa9.1□□□□□ -0.95
CLN3-204ENST00000357857 LCE2CQ5TA81 110 aa9.09□□□□□ -0.95
CLN3-204ENST00000357857 CSAG1Q6PB30 78 aa9.08□□□□□ -0.96
CLN3-204ENST00000357857 FLGP20930 4061 aaPredicted RBP9.06□□□□□ -0.96
CLN3-204ENST00000357857 PRO0628Q9UI54 55 aa9.03□□□□□ -0.96
CLN3-204ENST00000357857 PRR15LQ9BU68 103 aa9.01□□□□□ -0.97
CLN3-204ENST00000357857 A0A1B0GU69 56 aa8.99□□□□□ -0.97
CLN3-204ENST00000357857 PSPHP1O15172 72 aa8.99□□□□□ -0.97
CLN3-204ENST00000357857 SEC61GP60059 68 aa8.97□□□□□ -0.97
CLN3-204ENST00000357857 MT1HP80294 61 aa8.92□□□□□ -0.98
CLN3-204ENST00000357857 Q5VV11 94 aa8.91□□□□□ -0.98
CLN3-204ENST00000357857 FAT4Q6V0I7 4981 aa8.87□□□□□ -0.99
CLN3-204ENST00000357857 H0YAA0 97 aa8.85□□□□□ -0.99
CLN3-204ENST00000357857 ADM2Q7Z4H4 148 aa8.85□□□□□ -0.99
CLN3-204ENST00000357857 M0R2T5 61 aa8.85□□□□□ -0.99
CLN3-204ENST00000357857 KRTAP3-2Q9BYR7 98 aa8.85□□□□□ -0.99
CLN3-204ENST00000357857 KRTAP10-6P60371 365 aaPredicted RBP8.83□□□□□ -1
CLN3-204ENST00000357857 P0C880 135 aa8.78□□□□□ -1
CLN3-204ENST00000357857 LCE2AQ5TA79 106 aaPredicted RBP8.76□□□□□ -1.01
CLN3-204ENST00000357857 BRK1Q8WUW1 75 aa8.74□□□□□ -1.01
CLN3-204ENST00000357857 A0A1B0GU33 70 aa8.74□□□□□ -1.01
CLN3-204ENST00000357857 A6NED7 52 aa8.72□□□□□ -1.01
CLN3-204ENST00000357857 UQCR11O14957 56 aa8.7□□□□□ -1.02
CLN3-204ENST00000357857 MIR22HGQ0VDD5 57 aa8.6□□□□□ -1.03
CLN3-204ENST00000357857 SPATA8Q6RVD6 105 aa8.59□□□□□ -1.03
CLN3-204ENST00000357857 LORP23490 312 aaPredicted RBP8.58□□□□□ -1.04
CLN3-204ENST00000357857 KRTAP13-4Q3LI77 160 aa8.57□□□□□ -1.04
CLN3-204ENST00000357857 KRTAP9-8Q9BYQ0 159 aa8.57□□□□□ -1.04
CLN3-204ENST00000357857 M0QZ58 72 aa8.56□□□□□ -1.04
CLN3-204ENST00000357857 MT2AP02795 61 aa8.55□□□□□ -1.04
CLN3-204ENST00000357857 CDC42SE1Q9NRR8 79 aa8.54□□□□□ -1.04
CLN3-204ENST00000357857 R4GN34 69 aa8.54□□□□□ -1.04
CLN3-204ENST00000357857 CRIPTQ9P021 101 aa8.51□□□□□ -1.05
CLN3-204ENST00000357857 MT1FP04733 61 aa8.5□□□□□ -1.05
CLN3-204ENST00000357857 KRTAP10-10P60014 251 aa8.49□□□□□ -1.05
CLN3-204ENST00000357857 A8MU10 97 aa8.49□□□□□ -1.05
CLN3-204ENST00000357857 PMAIP1Q13794 54 aa8.48□□□□□ -1.05
CLN3-204ENST00000357857 A0A0D9SG42 100 aa8.43□□□□□ -1.06
CLN3-204ENST00000357857 KRTAP9-2Q9BYQ4 174 aa8.39□□□□□ -1.07
CLN3-204ENST00000357857 LINC01554Q52M75 96 aa8.38□□□□□ -1.07
CLN3-204ENST00000357857 SPRR2GQ9BYE4 73 aa8.34□□□□□ -1.07
CLN3-204ENST00000357857 KRTAP19-1Q8IUB9 90 aa8.32□□□□□ -1.08
CLN3-204ENST00000357857 KRTAP9-3Q9BYQ3 159 aa8.27□□□□□ -1.09
CLN3-204ENST00000357857 LCE2DQ5TA82 110 aaPredicted RBP8.26□□□□□ -1.09
CLN3-204ENST00000357857 KRTAP12-1P59990 96 aa8.25□□□□□ -1.09
CLN3-204ENST00000357857 KTN1-AS1Q86SY8 53 aa8.24□□□□□ -1.09
CLN3-204ENST00000357857 K7ERS5 55 aa8.23□□□□□ -1.09
CLN3-204ENST00000357857 SPINT4Q6UDR6 99 aa8.23□□□□□ -1.09
CLN3-204ENST00000357857 KRTAP12-2P59991 146 aa8.23□□□□□ -1.09
CLN3-204ENST00000357857 A6NN06 94 aa8.22□□□□□ -1.09
CLN3-204ENST00000357857 KRTAP19-8Q3LI54 63 aa8.14□□□□□ -1.11
CLN3-204ENST00000357857 PLAC4Q8WY50 150 aa8.07□□□□□ -1.12
CLN3-204ENST00000357857 KRTAP9-6A0A140TA67 174 aa8.05□□□□□ -1.12
CLN3-204ENST00000357857 LCE2BO14633 110 aa8.05□□□□□ -1.12
CLN3-204ENST00000357857 MT1BP07438 61 aa8.03□□□□□ -1.12
CLN3-204ENST00000357857 CAMK2N1Q7Z7J9 78 aa8□□□□□ -1.13
CLN3-204ENST00000357857 CRCT1Q9UGL9 99 aa7.98□□□□□ -1.13
CLN3-204ENST00000357857 FSIP2Q5CZC0 6907 aa7.95□□□□□ -1.14
CLN3-204ENST00000357857 ROMO1P60602 79 aa7.87□□□□□ -1.15
CLN3-204ENST00000357857 C10orf95Q9H7T3 257 aa7.81□□□□□ -1.16
CLN3-204ENST00000357857 USH2AO75445 5202 aa7.77□□□□□ -1.17
CLN3-204ENST00000357857 MT1XP80297 61 aa7.75□□□□□ -1.17
CLN3-204ENST00000357857 KRTAP10-5P60370 271 aa7.74□□□□□ -1.17
CLN3-204ENST00000357857 PRO2289Q9P1D8 64 aa7.69□□□□□ -1.18
CLN3-204ENST00000357857 TNP1P09430 55 aa7.6□□□□□ -1.19
CLN3-204ENST00000357857 KRTAP25-1Q3LHN0 102 aa7.6□□□□□ -1.19
CLN3-204ENST00000357857 PRAC1Q96KF2 57 aa7.59□□□□□ -1.19
CLN3-204ENST00000357857 SSPOA2VEC9 5147 aa7.59□□□□□ -1.2
CLN3-204ENST00000357857 KRTAP19-6Q3LI70 58 aa7.58□□□□□ -1.2
CLN3-204ENST00000357857 KRTAP10-7P60409 375 aaPredicted RBP7.44□□□□□ -1.22
CLN3-204ENST00000357857 FCGBPQ9Y6R7 5405 aaPredicted RBP7.41□□□□□ -1.22
CLN3-204ENST00000357857 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.39□□□□□ -1.23
CLN3-204ENST00000357857 KRTAP10-12P60413 245 aa7.35□□□□□ -1.23
CLN3-204ENST00000357857 KRTAP23-1A1A580 65 aa7.33□□□□□ -1.24
CLN3-204ENST00000357857 PP632Q6XCG6 107 aa7.32□□□□□ -1.24
CLN3-204ENST00000357857 LCE3AQ5TA76 89 aa7.29□□□□□ -1.24
CLN3-204ENST00000357857 KRTAP9-7A8MTY7 169 aa7.27□□□□□ -1.25
CLN3-204ENST00000357857 MACF1Q9UPN3 7388 aaKnown RBP7.18□□□□□ -1.26
CLN3-204ENST00000357857 KRTAP4-8A0A0G2JLE6 195 aa7.16□□□□□ -1.26
CLN3-204ENST00000357857 KRTAP4-8Q9BYQ9 185 aa7.16□□□□□ -1.26
CLN3-204ENST00000357857 KRTAP8-1Q8IUC2 63 aa7.13□□□□□ -1.27
CLN3-204ENST00000357857 H3BS24 57 aa7.08□□□□□ -1.28
CLN3-204ENST00000357857 KMT2DO14686 5537 aa7.06□□□□□ -1.28
CLN3-204ENST00000357857 SYNE2Q8WXH0 6885 aaKnown RBP7.05□□□□□ -1.28
CLN3-204ENST00000357857 KRTAP12-3P60328 96 aa7□□□□□ -1.29
CLN3-204ENST00000357857 KRTAP6-3Q3LI67 103 aa6.99□□□□□ -1.29
CLN3-204ENST00000357857 KRTAP19-5Q3LI72 72 aa6.99□□□□□ -1.29
CLN3-204ENST00000357857 KRTAP19-7Q3SYF9 63 aa6.91□□□□□ -1.3
CLN3-204ENST00000357857 KRTAP15-1Q3LI76 137 aa6.84□□□□□ -1.31
CLN3-204ENST00000357857 MT1EP04732 61 aa6.81□□□□□ -1.32
CLN3-204ENST00000357857 SPRR2FQ96RM1 72 aa6.73□□□□□ -1.33
CLN3-204ENST00000357857 KRTAP5-9P26371 169 aa6.73□□□□□ -1.33
CLN3-204ENST00000357857 MT1LQ93083 61 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms