RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 SERP2Q8N6R1 65 aa1.27□□□□□ -2.21
VPS54-202ENST00000354504 KRTAP10-8P60410 259 aa1.26□□□□□ -2.21
VPS54-202ENST00000354504 CD164Q04900 197 aa1.26□□□□□ -2.21
VPS54-202ENST00000354504 NDUFB1O75438 58 aa1.26□□□□□ -2.21
VPS54-202ENST00000354504 PRR15Q8IV56 129 aa1.26□□□□□ -2.21
VPS54-202ENST00000354504 TRAV7A0A075B6U4 112 aa1.25□□□□□ -2.21
VPS54-202ENST00000354504 C1orf195Q5TG92 126 aa1.25□□□□□ -2.21
VPS54-202ENST00000354504 LINC00208Q96KT6 92 aa1.25□□□□□ -2.21
VPS54-202ENST00000354504 PKIGQ9Y2B9 76 aa1.25□□□□□ -2.21
VPS54-202ENST00000354504 A8MWP4 228 aa1.24□□□□□ -2.21
VPS54-202ENST00000354504 CASC2Q6XLA1 102 aa1.24□□□□□ -2.21
VPS54-202ENST00000354504 RPS29P62273 56 aaKnown RBP1.24□□□□□ -2.21
VPS54-202ENST00000354504 PCOTHQ58A44 107 aa1.24□□□□□ -2.21
VPS54-202ENST00000354504 TMEM254Q8TBM7 123 aa1.24□□□□□ -2.21
VPS54-202ENST00000354504 HCG22E2RYF7 251 aa1.24□□□□□ -2.21
VPS54-202ENST00000354504 CYP4F30PQ9H0H9 118 aa1.24□□□□□ -2.21
VPS54-202ENST00000354504 ZNF706Q9Y5V0 76 aaPredicted RBP1.24□□□□□ -2.21
VPS54-202ENST00000354504 MP68P56378 58 aa1.23□□□□□ -2.21
VPS54-202ENST00000354504 hDV103S1A0JD37 113 aa1.23□□□□□ -2.21
VPS54-202ENST00000354504 TRAV22A0A0B4J277 110 aa1.22□□□□□ -2.21
VPS54-202ENST00000354504 A0A1B0GVX0 72 aa1.22□□□□□ -2.21
VPS54-202ENST00000354504 C9orf92A6NGG3 77 aa1.22□□□□□ -2.21
VPS54-202ENST00000354504 KRTAP4-1Q9BYQ7 146 aa1.22□□□□□ -2.21
VPS54-202ENST00000354504 C8orf17Q9NRJ1 99 aa1.22□□□□□ -2.21
VPS54-202ENST00000354504 FAM236DA0A1B0GTK5 79 aa1.22□□□□□ -2.21
VPS54-202ENST00000354504 A8MUU9 505 aa1.22□□□□□ -2.21
VPS54-202ENST00000354504 J3KT08 172 aa1.22□□□□□ -2.21
VPS54-202ENST00000354504 FAM236CP0DP71 79 aa1.22□□□□□ -2.21
VPS54-202ENST00000354504 TMEM258P61165 79 aa1.22□□□□□ -2.21
VPS54-202ENST00000354504 C20orf166-AS1Q96NR2 134 aa1.22□□□□□ -2.21
VPS54-202ENST00000354504 H0Y9P7 68 aa1.21□□□□□ -2.22
VPS54-202ENST00000354504 PSPHP1O15172 72 aa1.21□□□□□ -2.22
VPS54-202ENST00000354504 C1orf64Q8NEQ6 169 aa1.21□□□□□ -2.22
VPS54-202ENST00000354504 A8MU10 97 aa1.21□□□□□ -2.22
VPS54-202ENST00000354504 LINC00313P59037 77 aa1.21□□□□□ -2.22
VPS54-202ENST00000354504 SSBP3-AS1Q7Z2R9 100 aa1.21□□□□□ -2.22
VPS54-202ENST00000354504 SPINK1P00995 79 aa1.2□□□□□ -2.22
VPS54-202ENST00000354504 SPANXA2-OT1Q8N9U9 137 aa1.2□□□□□ -2.22
VPS54-202ENST00000354504 LINC00304Q8N9R0 145 aa1.2□□□□□ -2.22
VPS54-202ENST00000354504 MRPL34Q9BQ48 92 aaKnown RBP1.19□□□□□ -2.22
VPS54-202ENST00000354504 PRO0628Q9UI54 55 aa1.19□□□□□ -2.22
VPS54-202ENST00000354504 C4orf26Q17RF5 130 aa1.19□□□□□ -2.22
VPS54-202ENST00000354504 Q1T7F1 81 aa1.19□□□□□ -2.22
VPS54-202ENST00000354504 CAMK2N1Q7Z7J9 78 aa1.19□□□□□ -2.22
VPS54-202ENST00000354504 ATP5EP56381 51 aaPredicted RBP1.19□□□□□ -2.22
VPS54-202ENST00000354504 Q5VSD8 79 aa1.18□□□□□ -2.22
VPS54-202ENST00000354504 SMIM26A0A096LP01 95 aa1.18□□□□□ -2.22
VPS54-202ENST00000354504 CHKB-CPT1BH3BT56 60 aa1.18□□□□□ -2.22
VPS54-202ENST00000354504 NDUFC1O43677 76 aa1.18□□□□□ -2.22
VPS54-202ENST00000354504 HRES1P13985 223 aa1.18□□□□□ -2.22
VPS54-202ENST00000354504 LIMD2Q9BT23 127 aa1.18□□□□□ -2.22
VPS54-202ENST00000354504 SPAG11AQ6PDA7 123 aa1.18□□□□□ -2.22
VPS54-202ENST00000354504 BRK1Q8WUW1 75 aa1.18□□□□□ -2.22
VPS54-202ENST00000354504 DMAC1Q96GE9 116 aa1.18□□□□□ -2.22
VPS54-202ENST00000354504 SERP1Q9Y6X1 66 aa1.18□□□□□ -2.22
VPS54-202ENST00000354504 H3BPC8 53 aa1.17□□□□□ -2.22
VPS54-202ENST00000354504 Q5VV11 94 aa1.17□□□□□ -2.22
VPS54-202ENST00000354504 LOC101927531A0A1B0GV80 90 aa1.17□□□□□ -2.22
VPS54-202ENST00000354504 TP53AIP1Q9HCN2 124 aa1.17□□□□□ -2.22
VPS54-202ENST00000354504 C8orf87E5RJ46 101 aa1.16□□□□□ -2.22
VPS54-202ENST00000354504 KRTAP5-2Q701N4 177 aa1.16□□□□□ -2.22
VPS54-202ENST00000354504 SPTSSBQ8NFR3 76 aa1.16□□□□□ -2.22
VPS54-202ENST00000354504 A8MUN3 132 aa1.16□□□□□ -2.22
VPS54-202ENST00000354504 C7orf65Q6ZTY9 151 aa1.16□□□□□ -2.22
VPS54-202ENST00000354504 NEBP20929 6669 aa1.15□□□□□ -2.23
VPS54-202ENST00000354504 PRR15LQ9BU68 103 aa1.15□□□□□ -2.23
VPS54-202ENST00000354504 ATP11AUNQ6ZP68 121 aa1.15□□□□□ -2.23
VPS54-202ENST00000354504 COA5Q86WW8 74 aa1.15□□□□□ -2.23
VPS54-202ENST00000354504 A6NED7 52 aa1.14□□□□□ -2.23
VPS54-202ENST00000354504 LCA10Q71F78 164 aa1.14□□□□□ -2.23
VPS54-202ENST00000354504 RBM12B-AS1Q9P1G2 102 aa1.14□□□□□ -2.23
VPS54-202ENST00000354504 SPINK7P58062 85 aa1.14□□□□□ -2.23
VPS54-202ENST00000354504 KRTAP13-4Q3LI77 160 aa1.14□□□□□ -2.23
VPS54-202ENST00000354504 KRTAP4-3Q9BYR4 195 aa1.14□□□□□ -2.23
VPS54-202ENST00000354504 SSPOA2VEC9 5147 aa1.14□□□□□ -2.23
VPS54-202ENST00000354504 LINC01558Q9Y6Z2 57 aa1.14□□□□□ -2.23
VPS54-202ENST00000354504 ACYP2P14621 99 aa1.13□□□□□ -2.23
VPS54-202ENST00000354504 RPL37P61927 97 aaKnown RBP1.13□□□□□ -2.23
VPS54-202ENST00000354504 PMAIP1Q13794 54 aa1.13□□□□□ -2.23
VPS54-202ENST00000354504 CRCT1Q9UGL9 99 aa1.13□□□□□ -2.23
VPS54-202ENST00000354504 TPRXLQ17RH7 258 aa1.12□□□□□ -2.23
VPS54-202ENST00000354504 USH2AO75445 5202 aa1.12□□□□□ -2.23
VPS54-202ENST00000354504 A0A1B0GU69 56 aa1.12□□□□□ -2.23
VPS54-202ENST00000354504 H0YAA0 97 aa1.11□□□□□ -2.23
VPS54-202ENST00000354504 A6NN06 94 aa1.11□□□□□ -2.23
VPS54-202ENST00000354504 FSIP2Q5CZC0 6907 aa1.1□□□□□ -2.23
VPS54-202ENST00000354504 LCE3DQ9BYE3 92 aa1.09□□□□□ -2.23
VPS54-202ENST00000354504 A0A0D9SG42 100 aa1.09□□□□□ -2.23
VPS54-202ENST00000354504 KRTAP12-2P59991 146 aa1.09□□□□□ -2.23
VPS54-202ENST00000354504 LINC01554Q52M75 96 aa1.09□□□□□ -2.23
VPS54-202ENST00000354504 LUZP6Q538Z0 58 aa1.09□□□□□ -2.23
VPS54-202ENST00000354504 COX6B2Q6YFQ2 88 aa1.09□□□□□ -2.23
VPS54-202ENST00000354504 KMT2DO14686 5537 aa1.09□□□□□ -2.24
VPS54-202ENST00000354504 K7ERS5 55 aa1.09□□□□□ -2.24
VPS54-202ENST00000354504 KRTAP5-8O75690 187 aa1.08□□□□□ -2.24
VPS54-202ENST00000354504 SPATA8Q6RVD6 105 aa1.08□□□□□ -2.24
VPS54-202ENST00000354504 KRTAP5-5Q701N2 237 aaPredicted RBP1.08□□□□□ -2.24
VPS54-202ENST00000354504 UQCR11O14957 56 aa1.07□□□□□ -2.24
VPS54-202ENST00000354504 MIR22HGQ0VDD5 57 aa1.07□□□□□ -2.24
VPS54-202ENST00000354504 ADM2Q7Z4H4 148 aa1.07□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms