RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 SERP2Q8N6R1 65 aa1.27□□□□□ -2.21
VPS54-202ENST00000354504 KRTAP10-8P60410 259 aa1.26□□□□□ -2.21
VPS54-202ENST00000354504 CD164Q04900 197 aa1.26□□□□□ -2.21
VPS54-202ENST00000354504 NDUFB1O75438 58 aa1.26□□□□□ -2.21
VPS54-202ENST00000354504 PRR15Q8IV56 129 aa1.26□□□□□ -2.21
VPS54-202ENST00000354504 TRAV7A0A075B6U4 112 aa1.25□□□□□ -2.21
VPS54-202ENST00000354504 C1orf195Q5TG92 126 aa1.25□□□□□ -2.21
VPS54-202ENST00000354504 LINC00208Q96KT6 92 aa1.25□□□□□ -2.21
VPS54-202ENST00000354504 PKIGQ9Y2B9 76 aa1.25□□□□□ -2.21
VPS54-202ENST00000354504 A8MWP4 228 aa1.24□□□□□ -2.21
VPS54-202ENST00000354504 CASC2Q6XLA1 102 aa1.24□□□□□ -2.21
VPS54-202ENST00000354504 RPS29P62273 56 aaKnown RBP1.24□□□□□ -2.21
VPS54-202ENST00000354504 PCOTHQ58A44 107 aa1.24□□□□□ -2.21
VPS54-202ENST00000354504 TMEM254Q8TBM7 123 aa1.24□□□□□ -2.21
VPS54-202ENST00000354504 HCG22E2RYF7 251 aa1.24□□□□□ -2.21
VPS54-202ENST00000354504 CYP4F30PQ9H0H9 118 aa1.24□□□□□ -2.21
VPS54-202ENST00000354504 ZNF706Q9Y5V0 76 aaPredicted RBP1.24□□□□□ -2.21
VPS54-202ENST00000354504 MP68P56378 58 aa1.23□□□□□ -2.21
VPS54-202ENST00000354504 hDV103S1A0JD37 113 aa1.23□□□□□ -2.21
VPS54-202ENST00000354504 TRAV22A0A0B4J277 110 aa1.22□□□□□ -2.21
VPS54-202ENST00000354504 A0A1B0GVX0 72 aa1.22□□□□□ -2.21
VPS54-202ENST00000354504 C9orf92A6NGG3 77 aa1.22□□□□□ -2.21
VPS54-202ENST00000354504 KRTAP4-1Q9BYQ7 146 aa1.22□□□□□ -2.21
VPS54-202ENST00000354504 C8orf17Q9NRJ1 99 aa1.22□□□□□ -2.21
VPS54-202ENST00000354504 FAM236DA0A1B0GTK5 79 aa1.22□□□□□ -2.21
VPS54-202ENST00000354504 A8MUU9 505 aa1.22□□□□□ -2.21
VPS54-202ENST00000354504 J3KT08 172 aa1.22□□□□□ -2.21
VPS54-202ENST00000354504 FAM236CP0DP71 79 aa1.22□□□□□ -2.21
VPS54-202ENST00000354504 TMEM258P61165 79 aa1.22□□□□□ -2.21
VPS54-202ENST00000354504 C20orf166-AS1Q96NR2 134 aa1.22□□□□□ -2.21
VPS54-202ENST00000354504 H0Y9P7 68 aa1.21□□□□□ -2.22
VPS54-202ENST00000354504 PSPHP1O15172 72 aa1.21□□□□□ -2.22
VPS54-202ENST00000354504 C1orf64Q8NEQ6 169 aa1.21□□□□□ -2.22
VPS54-202ENST00000354504 A8MU10 97 aa1.21□□□□□ -2.22
VPS54-202ENST00000354504 LINC00313P59037 77 aa1.21□□□□□ -2.22
VPS54-202ENST00000354504 SSBP3-AS1Q7Z2R9 100 aa1.21□□□□□ -2.22
VPS54-202ENST00000354504 SPINK1P00995 79 aa1.2□□□□□ -2.22
VPS54-202ENST00000354504 SPANXA2-OT1Q8N9U9 137 aa1.2□□□□□ -2.22
VPS54-202ENST00000354504 LINC00304Q8N9R0 145 aa1.2□□□□□ -2.22
VPS54-202ENST00000354504 MRPL34Q9BQ48 92 aaKnown RBP1.19□□□□□ -2.22
VPS54-202ENST00000354504 PRO0628Q9UI54 55 aa1.19□□□□□ -2.22
VPS54-202ENST00000354504 C4orf26Q17RF5 130 aa1.19□□□□□ -2.22
VPS54-202ENST00000354504 Q1T7F1 81 aa1.19□□□□□ -2.22
VPS54-202ENST00000354504 CAMK2N1Q7Z7J9 78 aa1.19□□□□□ -2.22
VPS54-202ENST00000354504 ATP5EP56381 51 aaPredicted RBP1.19□□□□□ -2.22
VPS54-202ENST00000354504 Q5VSD8 79 aa1.18□□□□□ -2.22
VPS54-202ENST00000354504 SMIM26A0A096LP01 95 aa1.18□□□□□ -2.22
VPS54-202ENST00000354504 CHKB-CPT1BH3BT56 60 aa1.18□□□□□ -2.22
VPS54-202ENST00000354504 NDUFC1O43677 76 aa1.18□□□□□ -2.22
VPS54-202ENST00000354504 HRES1P13985 223 aa1.18□□□□□ -2.22
VPS54-202ENST00000354504 LIMD2Q9BT23 127 aa1.18□□□□□ -2.22
VPS54-202ENST00000354504 SPAG11AQ6PDA7 123 aa1.18□□□□□ -2.22
VPS54-202ENST00000354504 BRK1Q8WUW1 75 aa1.18□□□□□ -2.22
VPS54-202ENST00000354504 DMAC1Q96GE9 116 aa1.18□□□□□ -2.22
VPS54-202ENST00000354504 SERP1Q9Y6X1 66 aa1.18□□□□□ -2.22
VPS54-202ENST00000354504 H3BPC8 53 aa1.17□□□□□ -2.22
VPS54-202ENST00000354504 Q5VV11 94 aa1.17□□□□□ -2.22
VPS54-202ENST00000354504 LOC101927531A0A1B0GV80 90 aa1.17□□□□□ -2.22
VPS54-202ENST00000354504 TP53AIP1Q9HCN2 124 aa1.17□□□□□ -2.22
VPS54-202ENST00000354504 C8orf87E5RJ46 101 aa1.16□□□□□ -2.22
VPS54-202ENST00000354504 KRTAP5-2Q701N4 177 aa1.16□□□□□ -2.22
VPS54-202ENST00000354504 SPTSSBQ8NFR3 76 aa1.16□□□□□ -2.22
VPS54-202ENST00000354504 A8MUN3 132 aa1.16□□□□□ -2.22
VPS54-202ENST00000354504 C7orf65Q6ZTY9 151 aa1.16□□□□□ -2.22
VPS54-202ENST00000354504 NEBP20929 6669 aa1.15□□□□□ -2.23
VPS54-202ENST00000354504 PRR15LQ9BU68 103 aa1.15□□□□□ -2.23
VPS54-202ENST00000354504 ATP11AUNQ6ZP68 121 aa1.15□□□□□ -2.23
VPS54-202ENST00000354504 COA5Q86WW8 74 aa1.15□□□□□ -2.23
VPS54-202ENST00000354504 A6NED7 52 aa1.14□□□□□ -2.23
VPS54-202ENST00000354504 LCA10Q71F78 164 aa1.14□□□□□ -2.23
VPS54-202ENST00000354504 RBM12B-AS1Q9P1G2 102 aa1.14□□□□□ -2.23
VPS54-202ENST00000354504 SPINK7P58062 85 aa1.14□□□□□ -2.23
VPS54-202ENST00000354504 KRTAP13-4Q3LI77 160 aa1.14□□□□□ -2.23
VPS54-202ENST00000354504 KRTAP4-3Q9BYR4 195 aa1.14□□□□□ -2.23
VPS54-202ENST00000354504 SSPOA2VEC9 5147 aa1.14□□□□□ -2.23
VPS54-202ENST00000354504 LINC01558Q9Y6Z2 57 aa1.14□□□□□ -2.23
VPS54-202ENST00000354504 ACYP2P14621 99 aa1.13□□□□□ -2.23
VPS54-202ENST00000354504 RPL37P61927 97 aaKnown RBP1.13□□□□□ -2.23
VPS54-202ENST00000354504 PMAIP1Q13794 54 aa1.13□□□□□ -2.23
VPS54-202ENST00000354504 CRCT1Q9UGL9 99 aa1.13□□□□□ -2.23
VPS54-202ENST00000354504 TPRXLQ17RH7 258 aa1.12□□□□□ -2.23
VPS54-202ENST00000354504 USH2AO75445 5202 aa1.12□□□□□ -2.23
VPS54-202ENST00000354504 A0A1B0GU69 56 aa1.12□□□□□ -2.23
VPS54-202ENST00000354504 H0YAA0 97 aa1.11□□□□□ -2.23
VPS54-202ENST00000354504 A6NN06 94 aa1.11□□□□□ -2.23
VPS54-202ENST00000354504 FSIP2Q5CZC0 6907 aa1.1□□□□□ -2.23
VPS54-202ENST00000354504 LCE3DQ9BYE3 92 aa1.09□□□□□ -2.23
VPS54-202ENST00000354504 A0A0D9SG42 100 aa1.09□□□□□ -2.23
VPS54-202ENST00000354504 KRTAP12-2P59991 146 aa1.09□□□□□ -2.23
VPS54-202ENST00000354504 LINC01554Q52M75 96 aa1.09□□□□□ -2.23
VPS54-202ENST00000354504 LUZP6Q538Z0 58 aa1.09□□□□□ -2.23
VPS54-202ENST00000354504 COX6B2Q6YFQ2 88 aa1.09□□□□□ -2.23
VPS54-202ENST00000354504 KMT2DO14686 5537 aa1.09□□□□□ -2.24
VPS54-202ENST00000354504 K7ERS5 55 aa1.09□□□□□ -2.24
VPS54-202ENST00000354504 KRTAP5-8O75690 187 aa1.08□□□□□ -2.24
VPS54-202ENST00000354504 SPATA8Q6RVD6 105 aa1.08□□□□□ -2.24
VPS54-202ENST00000354504 KRTAP5-5Q701N2 237 aaPredicted RBP1.08□□□□□ -2.24
VPS54-202ENST00000354504 UQCR11O14957 56 aa1.07□□□□□ -2.24
VPS54-202ENST00000354504 MIR22HGQ0VDD5 57 aa1.07□□□□□ -2.24
VPS54-202ENST00000354504 ADM2Q7Z4H4 148 aa1.07□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms