RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 KRTAP10-7P60409 375 aaPredicted RBP7.22□□□□□ -1.25
SMAD4-201ENST00000342988 LYSTQ99698 3801 aa7.22□□□□□ -1.25
SMAD4-201ENST00000342988 LORP23490 312 aaPredicted RBP7.06□□□□□ -1.28
SMAD4-201ENST00000342988 DNAH7Q8WXX0 4024 aa7.06□□□□□ -1.28
SMAD4-201ENST00000342988 DNAH3Q8TD57 4116 aa7.05□□□□□ -1.28
SMAD4-201ENST00000342988 MT1HL1P0DM35 61 aa7.03□□□□□ -1.28
SMAD4-201ENST00000342988 KRTAP19-4Q3LI73 84 aa7□□□□□ -1.29
SMAD4-201ENST00000342988 ANK2Q01484 3957 aa6.92□□□□□ -1.3
SMAD4-201ENST00000342988 KMT2AQ03164 3969 aa6.86□□□□□ -1.31
SMAD4-201ENST00000342988 LCE3CQ5T5A8 94 aa6.84□□□□□ -1.31
SMAD4-201ENST00000342988 ZNF469Q96JG9 3925 aaPredicted RBP6.84□□□□□ -1.31
SMAD4-201ENST00000342988 SPRR2FQ96RM1 72 aa6.78□□□□□ -1.32
SMAD4-201ENST00000342988 DNAH2Q9P225 4427 aa6.76□□□□□ -1.33
SMAD4-201ENST00000342988 DNAH1Q9P2D7 4330 aa6.74□□□□□ -1.33
SMAD4-201ENST00000342988 HECTD4Q9Y4D8 3996 aa6.74□□□□□ -1.33
SMAD4-201ENST00000342988 DNAH6Q9C0G6 4158 aa6.72□□□□□ -1.33
SMAD4-201ENST00000342988 KRTAP10-4P60372 401 aaPredicted RBP6.72□□□□□ -1.33
SMAD4-201ENST00000342988 KRTAP19-5Q3LI72 72 aa6.65□□□□□ -1.35
SMAD4-201ENST00000342988 VPS13BQ7Z7G8 4022 aa6.64□□□□□ -1.35
SMAD4-201ENST00000342988 FRAS1Q86XX4 4008 aa6.64□□□□□ -1.35
SMAD4-201ENST00000342988 SPRR2GQ9BYE4 73 aa6.61□□□□□ -1.35
SMAD4-201ENST00000342988 FLGP20930 4061 aaPredicted RBP6.57□□□□□ -1.36
SMAD4-201ENST00000342988 HUWE1Q7Z6Z7 4374 aaKnown RBP6.53□□□□□ -1.36
SMAD4-201ENST00000342988 KRTAP12-4P60329 112 aa6.51□□□□□ -1.37
SMAD4-201ENST00000342988 MT3P25713 68 aa6.51□□□□□ -1.37
SMAD4-201ENST00000342988 LCE3BQ5TA77 95 aa6.5□□□□□ -1.37
SMAD4-201ENST00000342988 KRTAP4-5Q9BYR2 181 aa6.46□□□□□ -1.38
SMAD4-201ENST00000342988 SPRR2EP22531 72 aa6.4□□□□□ -1.38
SMAD4-201ENST00000342988 SPRR2BP35325 72 aa6.4□□□□□ -1.38
SMAD4-201ENST00000342988 SPRR2AP35326 72 aa6.4□□□□□ -1.38
SMAD4-201ENST00000342988 MT1HP80294 61 aa6.38□□□□□ -1.39
SMAD4-201ENST00000342988 LCE2BO14633 110 aa6.29□□□□□ -1.4
SMAD4-201ENST00000342988 SPRR2DP22532 72 aa6.25□□□□□ -1.41
SMAD4-201ENST00000342988 LCE3DQ9BYE3 92 aa6.25□□□□□ -1.41
SMAD4-201ENST00000342988 ANK3Q12955 4377 aaKnown RBP6.25□□□□□ -1.41
SMAD4-201ENST00000342988 MT2AP02795 61 aa6.24□□□□□ -1.41
SMAD4-201ENST00000342988 PRKDCP78527 4128 aaKnown RBP6.2□□□□□ -1.42
SMAD4-201ENST00000342988 LCE3EQ5T5B0 92 aa6.12□□□□□ -1.43
SMAD4-201ENST00000342988 MT1FP04733 61 aa6.03□□□□□ -1.44
SMAD4-201ENST00000342988 MT1GP13640 62 aa6.03□□□□□ -1.44
SMAD4-201ENST00000342988 FAT2Q9NYQ8 4349 aa5.95□□□□□ -1.46
SMAD4-201ENST00000342988 KRTAP4-1Q9BYQ7 146 aa5.95□□□□□ -1.46
SMAD4-201ENST00000342988 LCE2CQ5TA81 110 aa5.94□□□□□ -1.46
SMAD4-201ENST00000342988 DNAH10Q8IVF4 4471 aa5.87□□□□□ -1.47
SMAD4-201ENST00000342988 DNAH8Q96JB1 4490 aa5.83□□□□□ -1.48
SMAD4-201ENST00000342988 VPS13DQ5THJ4 4388 aa5.81□□□□□ -1.48
SMAD4-201ENST00000342988 KRTAP19-8Q3LI54 63 aa5.79□□□□□ -1.48
SMAD4-201ENST00000342988 LCE2DQ5TA82 110 aaPredicted RBP5.74□□□□□ -1.49
SMAD4-201ENST00000342988 DNAH17Q9UFH2 4485 aa5.72□□□□□ -1.49
SMAD4-201ENST00000342988 SPRR5A0A1B0GTR4 108 aa5.7□□□□□ -1.5
SMAD4-201ENST00000342988 PRM1P04553 51 aa5.7□□□□□ -1.5
SMAD4-201ENST00000342988 MT1XP80297 61 aa5.69□□□□□ -1.5
SMAD4-201ENST00000342988 PKHD1L1Q86WI1 4243 aa5.68□□□□□ -1.5
SMAD4-201ENST00000342988 DYNC2H1Q8NCM8 4307 aaKnown RBP5.68□□□□□ -1.5
SMAD4-201ENST00000342988 MT1LQ93083 61 aa5.64□□□□□ -1.51
SMAD4-201ENST00000342988 PKHD1P08F94 4074 aa5.63□□□□□ -1.51
SMAD4-201ENST00000342988 DNAH11Q96DT5 4516 aa5.61□□□□□ -1.51
SMAD4-201ENST00000342988 DNAH9Q9NYC9 4486 aa5.56□□□□□ -1.52
SMAD4-201ENST00000342988 KRTAP19-3Q7Z4W3 81 aa5.55□□□□□ -1.52
SMAD4-201ENST00000342988 KRTAP19-1Q8IUB9 90 aa5.55□□□□□ -1.52
SMAD4-201ENST00000342988 LCE1BQ5T7P3 118 aa5.5□□□□□ -1.53
SMAD4-201ENST00000342988 LRP1Q07954 4544 aaKnown RBP5.49□□□□□ -1.53
SMAD4-201ENST00000342988 LCE1DQ5T752 114 aa5.47□□□□□ -1.53
SMAD4-201ENST00000342988 MT4P47944 62 aa5.47□□□□□ -1.53
SMAD4-201ENST00000342988 DNAH5Q8TE73 4624 aa5.35□□□□□ -1.55
SMAD4-201ENST00000342988 KRTAP4-8A0A0G2JLE6 195 aa5.34□□□□□ -1.55
SMAD4-201ENST00000342988 KRTAP4-8Q9BYQ9 185 aa5.34□□□□□ -1.55
SMAD4-201ENST00000342988 MT1EP04732 61 aa5.31□□□□□ -1.56
SMAD4-201ENST00000342988 PLECQ15149 4684 aaKnown RBP5.29□□□□□ -1.56
SMAD4-201ENST00000342988 MT1BP07438 61 aa5.29□□□□□ -1.56
SMAD4-201ENST00000342988 PKD1P98161 4303 aa5.29□□□□□ -1.56
SMAD4-201ENST00000342988 FAT1Q14517 4588 aa5.24□□□□□ -1.57
SMAD4-201ENST00000342988 DYNC1H1Q14204 4646 aaKnown RBP5.22□□□□□ -1.57
SMAD4-201ENST00000342988 KRTAP9-8Q9BYQ0 159 aa5.21□□□□□ -1.58
SMAD4-201ENST00000342988 LCE5AQ5TCM9 118 aa5.21□□□□□ -1.58
SMAD4-201ENST00000342988 STARD9Q9P2P6 4700 aa5.18□□□□□ -1.58
SMAD4-201ENST00000342988 MT1MQ8N339 61 aa5.17□□□□□ -1.58
SMAD4-201ENST00000342988 APOBP04114 4563 aaKnown RBP5.17□□□□□ -1.58
SMAD4-201ENST00000342988 TNXBP22105 4242 aa5.15□□□□□ -1.58
SMAD4-201ENST00000342988 HSPG2P98160 4391 aa5.14□□□□□ -1.59
SMAD4-201ENST00000342988 KRTAP9-3Q9BYQ3 159 aa5.11□□□□□ -1.59
SMAD4-201ENST00000342988 SACSQ9NZJ4 4579 aa5.1□□□□□ -1.59
SMAD4-201ENST00000342988 DNHD1Q96M86 4753 aa5.08□□□□□ -1.6
SMAD4-201ENST00000342988 RYR1P21817 5038 aa5.07□□□□□ -1.6
SMAD4-201ENST00000342988 LRP1BQ9NZR2 4599 aa5.06□□□□□ -1.6
SMAD4-201ENST00000342988 LCE1CQ5T751 118 aa5.02□□□□□ -1.61
SMAD4-201ENST00000342988 LCE1EQ5T753 118 aa5.02□□□□□ -1.61
SMAD4-201ENST00000342988 LCE1FQ5T754 118 aa5.02□□□□□ -1.61
SMAD4-201ENST00000342988 LCE1AQ5T7P2 110 aa5.02□□□□□ -1.61
SMAD4-201ENST00000342988 KRTAP4-7Q9BYR0 210 aa5.01□□□□□ -1.61
SMAD4-201ENST00000342988 MT1AP04731 61 aa4.96□□□□□ -1.62
SMAD4-201ENST00000342988 KRTAP2-3P0C7H8 128 aa4.93□□□□□ -1.62
SMAD4-201ENST00000342988 KRTAP2-4Q9BYR9 128 aa4.93□□□□□ -1.62
SMAD4-201ENST00000342988 KRTAP2-1Q9BYU5 128 aa4.93□□□□□ -1.62
SMAD4-201ENST00000342988 LOC100996750A0A140TA64 210 aa4.92□□□□□ -1.62
SMAD4-201ENST00000342988 KRTAP19-6Q3LI70 58 aa4.83□□□□□ -1.64
SMAD4-201ENST00000342988 KRTAP6-2Q3LI66 62 aa4.78□□□□□ -1.64
SMAD4-201ENST00000342988 KRTAP20-1Q3LI63 56 aa4.78□□□□□ -1.64
SMAD4-201ENST00000342988 KRTAP17-1Q9BYP8 105 aa4.77□□□□□ -1.65
SMAD4-201ENST00000342988 KIAA1109Q2LD37 5005 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms