RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 Q5VSD8 79 aa11.37□□□□□ -0.59
SHMT1-201ENST00000316694 RYR3Q15413 4870 aa11.34□□□□□ -0.59
SHMT1-201ENST00000316694 MYCBP2O75592 4640 aa11.33□□□□□ -0.6
SHMT1-201ENST00000316694 RPL37P61927 97 aaKnown RBP11.32□□□□□ -0.6
SHMT1-201ENST00000316694 K7ERS5 55 aa11.32□□□□□ -0.6
SHMT1-201ENST00000316694 KRTAP3-3Q9BYR6 98 aa11.3□□□□□ -0.6
SHMT1-201ENST00000316694 KRTAP17-1Q9BYP8 105 aa11.28□□□□□ -0.6
SHMT1-201ENST00000316694 KRTAP25-1Q3LHN0 102 aa11.28□□□□□ -0.6
SHMT1-201ENST00000316694 XP32Q5T750 250 aa11.27□□□□□ -0.61
SHMT1-201ENST00000316694 RYR1P21817 5038 aa11.26□□□□□ -0.61
SHMT1-201ENST00000316694 KRTAP10-6P60371 365 aaPredicted RBP11.25□□□□□ -0.61
SHMT1-201ENST00000316694 S4R3F8 94 aa11.21□□□□□ -0.61
SHMT1-201ENST00000316694 CRIPTQ9P021 101 aa11.2□□□□□ -0.62
SHMT1-201ENST00000316694 KRTAP13-4Q3LI77 160 aa11.18□□□□□ -0.62
SHMT1-201ENST00000316694 KIAA1109Q2LD37 5005 aa11.18□□□□□ -0.62
SHMT1-201ENST00000316694 A0A0D9SG42 100 aa11.17□□□□□ -0.62
SHMT1-201ENST00000316694 KRTAP3-2Q9BYR7 98 aa11.15□□□□□ -0.62
SHMT1-201ENST00000316694 ROMO1P60602 79 aa11.07□□□□□ -0.64
SHMT1-201ENST00000316694 P0C880 135 aa11.06□□□□□ -0.64
SHMT1-201ENST00000316694 MT1HL1P0DM35 61 aa11.06□□□□□ -0.64
SHMT1-201ENST00000316694 LPAP08519 4548 aa11.01□□□□□ -0.65
SHMT1-201ENST00000316694 EPPK1P58107 5090 aaKnown RBP10.94□□□□□ -0.66
SHMT1-201ENST00000316694 LRP2P98164 4655 aa10.93□□□□□ -0.66
SHMT1-201ENST00000316694 KRTAP12-2P59991 146 aa10.83□□□□□ -0.68
SHMT1-201ENST00000316694 ABCA13Q86UQ4 5058 aa10.82□□□□□ -0.68
SHMT1-201ENST00000316694 TPRXLQ17RH7 258 aa10.8□□□□□ -0.68
SHMT1-201ENST00000316694 SPINT4Q6UDR6 99 aa10.77□□□□□ -0.69
SHMT1-201ENST00000316694 C10orf95Q9H7T3 257 aa10.75□□□□□ -0.69
SHMT1-201ENST00000316694 KRTAP12-1P59990 96 aa10.72□□□□□ -0.69
SHMT1-201ENST00000316694 H3BS24 57 aa10.71□□□□□ -0.69
SHMT1-201ENST00000316694 KRTAP4-5Q9BYR2 181 aa10.7□□□□□ -0.7
SHMT1-201ENST00000316694 M0QZ58 72 aa10.64□□□□□ -0.71
SHMT1-201ENST00000316694 R4GN34 69 aa10.44□□□□□ -0.74
SHMT1-201ENST00000316694 MUC17Q685J3 4493 aa10.4□□□□□ -0.74
SHMT1-201ENST00000316694 SEC61BP60468 96 aaKnown RBP10.38□□□□□ -0.75
SHMT1-201ENST00000316694 KRTAP4-1Q9BYQ7 146 aa10.32□□□□□ -0.76
SHMT1-201ENST00000316694 HERC2O95714 4834 aa10.3□□□□□ -0.76
SHMT1-201ENST00000316694 LORP23490 312 aaPredicted RBP10.29□□□□□ -0.76
SHMT1-201ENST00000316694 KRTAP15-1Q3LI76 137 aa10.29□□□□□ -0.76
SHMT1-201ENST00000316694 J3QL48 77 aa10.28□□□□□ -0.76
SHMT1-201ENST00000316694 MUC2Q02817 5179 aa10.15□□□□□ -0.78
SHMT1-201ENST00000316694 NDUFAF8A1L188 74 aa10.13□□□□□ -0.79
SHMT1-201ENST00000316694 KRTAP19-2Q3LHN2 52 aa10.09□□□□□ -0.79
SHMT1-201ENST00000316694 CAMK2N1Q7Z7J9 78 aa9.94□□□□□ -0.82
SHMT1-201ENST00000316694 BIRC6Q9NR09 4857 aa9.92□□□□□ -0.82
SHMT1-201ENST00000316694 HERC1Q15751 4861 aa9.87□□□□□ -0.83
SHMT1-201ENST00000316694 FLGP20930 4061 aaPredicted RBP9.85□□□□□ -0.83
SHMT1-201ENST00000316694 PLAC4Q8WY50 150 aa9.84□□□□□ -0.83
SHMT1-201ENST00000316694 PCLOQ9Y6V0 5065 aa9.81□□□□□ -0.84
SHMT1-201ENST00000316694 PP632Q6XCG6 107 aa9.72□□□□□ -0.85
SHMT1-201ENST00000316694 HMCN2Q8NDA2 5059 aa9.72□□□□□ -0.85
SHMT1-201ENST00000316694 FAT4Q6V0I7 4981 aa9.64□□□□□ -0.87
SHMT1-201ENST00000316694 TNP1P09430 55 aa9.53□□□□□ -0.88
SHMT1-201ENST00000316694 LCE2CQ5TA81 110 aa9.52□□□□□ -0.89
SHMT1-201ENST00000316694 RNF213Q63HN8 5207 aa9.43□□□□□ -0.9
SHMT1-201ENST00000316694 LUZP6Q538Z0 58 aa9.42□□□□□ -0.9
SHMT1-201ENST00000316694 UBR4Q5T4S7 5183 aa9.37□□□□□ -0.91
SHMT1-201ENST00000316694 M0R2T5 61 aa9.32□□□□□ -0.92
SHMT1-201ENST00000316694 KRTAP23-1A1A580 65 aa9.32□□□□□ -0.92
SHMT1-201ENST00000316694 SPRR2GQ9BYE4 73 aa9.31□□□□□ -0.92
SHMT1-201ENST00000316694 KRTAP19-1Q8IUB9 90 aa9.28□□□□□ -0.92
SHMT1-201ENST00000316694 MT1HP80294 61 aa9.26□□□□□ -0.93
SHMT1-201ENST00000316694 MT1FP04733 61 aa9.11□□□□□ -0.95
SHMT1-201ENST00000316694 KRTAP10-10P60014 251 aa9.11□□□□□ -0.95
SHMT1-201ENST00000316694 MT2AP02795 61 aa9.09□□□□□ -0.95
SHMT1-201ENST00000316694 SPRR5A0A1B0GTR4 108 aa9.08□□□□□ -0.96
SHMT1-201ENST00000316694 KRTAP9-8Q9BYQ0 159 aa9.05□□□□□ -0.96
SHMT1-201ENST00000316694 LCE3AQ5TA76 89 aa9.04□□□□□ -0.96
SHMT1-201ENST00000316694 A0A0A0MQY5 61 aa8.97□□□□□ -0.97
SHMT1-201ENST00000316694 KRTAP19-8Q3LI54 63 aa8.86□□□□□ -0.99
SHMT1-201ENST00000316694 MT1BP07438 61 aa8.78□□□□□ -1
SHMT1-201ENST00000316694 KRTAP10-5P60370 271 aa8.77□□□□□ -1.01
SHMT1-201ENST00000316694 MT1XP80297 61 aa8.75□□□□□ -1.01
SHMT1-201ENST00000316694 KRTAP8-1Q8IUC2 63 aa8.75□□□□□ -1.01
SHMT1-201ENST00000316694 KRTAP9-3Q9BYQ3 159 aa8.65□□□□□ -1.02
SHMT1-201ENST00000316694 KRTAP10-12P60413 245 aa8.64□□□□□ -1.03
SHMT1-201ENST00000316694 KRTAP12-3P60328 96 aa8.59□□□□□ -1.03
SHMT1-201ENST00000316694 KRTAP10-7P60409 375 aaPredicted RBP8.55□□□□□ -1.04
SHMT1-201ENST00000316694 PRO2289Q9P1D8 64 aa8.41□□□□□ -1.06
SHMT1-201ENST00000316694 USH2AO75445 5202 aa8.39□□□□□ -1.07
SHMT1-201ENST00000316694 LCE2BO14633 110 aa8.36□□□□□ -1.07
SHMT1-201ENST00000316694 KMT2DO14686 5537 aa8.22□□□□□ -1.09
SHMT1-201ENST00000316694 KRTAP19-5Q3LI72 72 aa8.21□□□□□ -1.09
SHMT1-201ENST00000316694 LCE2AQ5TA79 106 aaPredicted RBP8.21□□□□□ -1.1
SHMT1-201ENST00000316694 LCE3CQ5T5A8 94 aa8.08□□□□□ -1.12
SHMT1-201ENST00000316694 INE1O15225 51 aa8.06□□□□□ -1.12
SHMT1-201ENST00000316694 KRTAP4-8A0A0G2JLE6 195 aa8.03□□□□□ -1.12
SHMT1-201ENST00000316694 KRTAP4-8Q9BYQ9 185 aa8.03□□□□□ -1.12
SHMT1-201ENST00000316694 KRTAP9-6A8MVA2 160 aa7.81□□□□□ -1.16
SHMT1-201ENST00000316694 KRTAP19-7Q3SYF9 63 aa7.79□□□□□ -1.16
SHMT1-201ENST00000316694 KRTAP4-7Q9BYR0 210 aa7.74□□□□□ -1.17
SHMT1-201ENST00000316694 SSPOA2VEC9 5147 aa7.71□□□□□ -1.17
SHMT1-201ENST00000316694 FSIP2Q5CZC0 6907 aa7.67□□□□□ -1.18
SHMT1-201ENST00000316694 MT1LQ93083 61 aa7.58□□□□□ -1.2
SHMT1-201ENST00000316694 MT1EP04732 61 aa7.56□□□□□ -1.2
SHMT1-201ENST00000316694 KRTAP2-3P0C7H8 128 aa7.52□□□□□ -1.21
SHMT1-201ENST00000316694 KRTAP2-4Q9BYR9 128 aa7.52□□□□□ -1.21
SHMT1-201ENST00000316694 KRTAP2-1Q9BYU5 128 aa7.52□□□□□ -1.21
SHMT1-201ENST00000316694 KRTAP19-4Q3LI73 84 aa7.47□□□□□ -1.21
SHMT1-201ENST00000316694 KRTAP19-6Q3LI70 58 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms