RNA–Protein interactions for RNA: ENST00000302085.8

SMAD1-201, Transcript of SMAD family member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMAD1, Length 1,966 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD1-201ENST00000302085 RBM12B-AS1Q9P1G2 102 aa11.17□□□□□ -0.62
SMAD1-201ENST00000302085 KRTAP3-3Q9BYR6 98 aa11.17□□□□□ -0.62
SMAD1-201ENST00000302085 LCA10Q71F78 164 aa11.16□□□□□ -0.62
SMAD1-201ENST00000302085 BRK1Q8WUW1 75 aa11.15□□□□□ -0.62
SMAD1-201ENST00000302085 S4R3F8 94 aa11.13□□□□□ -0.63
SMAD1-201ENST00000302085 HERC1Q15751 4861 aa11.1□□□□□ -0.63
SMAD1-201ENST00000302085 A6NED7 52 aa11.09□□□□□ -0.63
SMAD1-201ENST00000302085 MUC17Q685J3 4493 aa11.05□□□□□ -0.64
SMAD1-201ENST00000302085 SEC61GP60059 68 aa11.03□□□□□ -0.64
SMAD1-201ENST00000302085 HMCN2Q8NDA2 5059 aa11.02□□□□□ -0.65
SMAD1-201ENST00000302085 A8MU10 97 aa11.01□□□□□ -0.65
SMAD1-201ENST00000302085 PRO0628Q9UI54 55 aa10.99□□□□□ -0.65
SMAD1-201ENST00000302085 KRTAP19-2Q3LHN2 52 aa10.92□□□□□ -0.66
SMAD1-201ENST00000302085 CDC42SE1Q9NRR8 79 aa10.92□□□□□ -0.66
SMAD1-201ENST00000302085 UQCR11O14957 56 aa10.88□□□□□ -0.67
SMAD1-201ENST00000302085 CSAG1Q6PB30 78 aa10.86□□□□□ -0.67
SMAD1-201ENST00000302085 KRTAP3-2Q9BYR7 98 aa10.84□□□□□ -0.67
SMAD1-201ENST00000302085 SPATA8Q6RVD6 105 aa10.83□□□□□ -0.68
SMAD1-201ENST00000302085 KRTAP10-6P60371 365 aaPredicted RBP10.83□□□□□ -0.68
SMAD1-201ENST00000302085 A0A1B0GU33 70 aa10.81□□□□□ -0.68
SMAD1-201ENST00000302085 MIR22HGQ0VDD5 57 aa10.81□□□□□ -0.68
SMAD1-201ENST00000302085 MUC2Q02817 5179 aa10.71□□□□□ -0.69
SMAD1-201ENST00000302085 P0C880 135 aa10.71□□□□□ -0.69
SMAD1-201ENST00000302085 ADM2Q7Z4H4 148 aa10.71□□□□□ -0.69
SMAD1-201ENST00000302085 H0YAA0 97 aa10.7□□□□□ -0.7
SMAD1-201ENST00000302085 KRTAP13-4Q3LI77 160 aa10.58□□□□□ -0.72
SMAD1-201ENST00000302085 LCE2CQ5TA81 110 aa10.58□□□□□ -0.72
SMAD1-201ENST00000302085 SVIPQ8NHG7 77 aa10.57□□□□□ -0.72
SMAD1-201ENST00000302085 PMAIP1Q13794 54 aa10.54□□□□□ -0.72
SMAD1-201ENST00000302085 FLGP20930 4061 aaPredicted RBP10.52□□□□□ -0.73
SMAD1-201ENST00000302085 UBR4Q5T4S7 5183 aa10.52□□□□□ -0.73
SMAD1-201ENST00000302085 RNF213Q63HN8 5207 aa10.49□□□□□ -0.73
SMAD1-201ENST00000302085 A6NN06 94 aa10.48□□□□□ -0.73
SMAD1-201ENST00000302085 A0A0D9SG42 100 aa10.38□□□□□ -0.75
SMAD1-201ENST00000302085 M0QZ58 72 aa10.37□□□□□ -0.75
SMAD1-201ENST00000302085 LORP23490 312 aaPredicted RBP10.35□□□□□ -0.75
SMAD1-201ENST00000302085 MT1HP80294 61 aa10.32□□□□□ -0.76
SMAD1-201ENST00000302085 R4GN34 69 aa10.26□□□□□ -0.77
SMAD1-201ENST00000302085 FAT4Q6V0I7 4981 aa10.25□□□□□ -0.77
SMAD1-201ENST00000302085 K7ERS5 55 aa10.21□□□□□ -0.78
SMAD1-201ENST00000302085 M0R2T5 61 aa10.21□□□□□ -0.78
SMAD1-201ENST00000302085 KRTAP12-2P59991 146 aa10.16□□□□□ -0.78
SMAD1-201ENST00000302085 KRTAP12-1P59990 96 aa10.15□□□□□ -0.78
SMAD1-201ENST00000302085 LINC01554Q52M75 96 aa10.14□□□□□ -0.79
SMAD1-201ENST00000302085 KTN1-AS1Q86SY8 53 aa10.13□□□□□ -0.79
SMAD1-201ENST00000302085 SPINT4Q6UDR6 99 aa10.1□□□□□ -0.79
SMAD1-201ENST00000302085 CRIPTQ9P021 101 aa10.06□□□□□ -0.8
SMAD1-201ENST00000302085 KRTAP9-8Q9BYQ0 159 aa9.99□□□□□ -0.81
SMAD1-201ENST00000302085 MT2AP02795 61 aa9.97□□□□□ -0.81
SMAD1-201ENST00000302085 MT1FP04733 61 aa9.93□□□□□ -0.82
SMAD1-201ENST00000302085 PRAC1Q96KF2 57 aa9.91□□□□□ -0.82
SMAD1-201ENST00000302085 ROMO1P60602 79 aa9.89□□□□□ -0.83
SMAD1-201ENST00000302085 KRTAP10-10P60014 251 aa9.88□□□□□ -0.83
SMAD1-201ENST00000302085 KRTAP19-1Q8IUB9 90 aa9.85□□□□□ -0.83
SMAD1-201ENST00000302085 SPRR2GQ9BYE4 73 aa9.85□□□□□ -0.83
SMAD1-201ENST00000302085 LCE2AQ5TA79 106 aaPredicted RBP9.74□□□□□ -0.85
SMAD1-201ENST00000302085 CAMK2N1Q7Z7J9 78 aa9.64□□□□□ -0.87
SMAD1-201ENST00000302085 C10orf95Q9H7T3 257 aa9.63□□□□□ -0.87
SMAD1-201ENST00000302085 KRTAP9-3Q9BYQ3 159 aa9.62□□□□□ -0.87
SMAD1-201ENST00000302085 KRTAP25-1Q3LHN0 102 aa9.58□□□□□ -0.88
SMAD1-201ENST00000302085 KRTAP19-8Q3LI54 63 aa9.57□□□□□ -0.88
SMAD1-201ENST00000302085 PLAC4Q8WY50 150 aa9.55□□□□□ -0.88
SMAD1-201ENST00000302085 MT1BP07438 61 aa9.45□□□□□ -0.9
SMAD1-201ENST00000302085 LCE2BO14633 110 aa9.33□□□□□ -0.92
SMAD1-201ENST00000302085 TNP1P09430 55 aa9.21□□□□□ -0.94
SMAD1-201ENST00000302085 KRTAP10-5P60370 271 aa9.19□□□□□ -0.94
SMAD1-201ENST00000302085 MT1XP80297 61 aa9.19□□□□□ -0.94
SMAD1-201ENST00000302085 PP632Q6XCG6 107 aa9.03□□□□□ -0.96
SMAD1-201ENST00000302085 KRTAP23-1A1A580 65 aa8.97□□□□□ -0.97
SMAD1-201ENST00000302085 PRO2289Q9P1D8 64 aa8.97□□□□□ -0.97
SMAD1-201ENST00000302085 USH2AO75445 5202 aa8.95□□□□□ -0.98
SMAD1-201ENST00000302085 KRTAP10-7P60409 375 aaPredicted RBP8.86□□□□□ -0.99
SMAD1-201ENST00000302085 LCE3AQ5TA76 89 aa8.84□□□□□ -0.99
SMAD1-201ENST00000302085 KRTAP10-12P60413 245 aa8.75□□□□□ -1.01
SMAD1-201ENST00000302085 LCE2DQ5TA82 110 aaPredicted RBP8.73□□□□□ -1.01
SMAD1-201ENST00000302085 KRTAP19-6Q3LI70 58 aa8.64□□□□□ -1.03
SMAD1-201ENST00000302085 KRTAP8-1Q8IUC2 63 aa8.64□□□□□ -1.03
SMAD1-201ENST00000302085 SSPOA2VEC9 5147 aa8.62□□□□□ -1.03
SMAD1-201ENST00000302085 KRTAP15-1Q3LI76 137 aa8.56□□□□□ -1.04
SMAD1-201ENST00000302085 FSIP2Q5CZC0 6907 aa8.49□□□□□ -1.05
SMAD1-201ENST00000302085 KRTAP4-8A0A0G2JLE6 195 aa8.48□□□□□ -1.05
SMAD1-201ENST00000302085 KRTAP4-8Q9BYQ9 185 aa8.48□□□□□ -1.05
SMAD1-201ENST00000302085 KRTAP12-3P60328 96 aa8.45□□□□□ -1.06
SMAD1-201ENST00000302085 KRTAP19-5Q3LI72 72 aa8.37□□□□□ -1.07
SMAD1-201ENST00000302085 KMT2DO14686 5537 aa8.33□□□□□ -1.08
SMAD1-201ENST00000302085 KRTAP9-2Q9BYQ4 174 aa8.28□□□□□ -1.08
SMAD1-201ENST00000302085 FCGBPQ9Y6R7 5405 aaPredicted RBP8.23□□□□□ -1.09
SMAD1-201ENST00000302085 KRTAP19-7Q3SYF9 63 aa8.21□□□□□ -1.1
SMAD1-201ENST00000302085 SPRR5A0A1B0GTR4 108 aa8.15□□□□□ -1.1
SMAD1-201ENST00000302085 MT1EP04732 61 aa8.03□□□□□ -1.12
SMAD1-201ENST00000302085 CRCT1Q9UGL9 99 aa8.02□□□□□ -1.12
SMAD1-201ENST00000302085 NDUFAF8A1L188 74 aa7.97□□□□□ -1.13
SMAD1-201ENST00000302085 LCE3CQ5T5A8 94 aa7.93□□□□□ -1.14
SMAD1-201ENST00000302085 LUZP6Q538Z0 58 aa7.91□□□□□ -1.14
SMAD1-201ENST00000302085 MT1LQ93083 61 aa7.91□□□□□ -1.14
SMAD1-201ENST00000302085 MACF1Q9UPN3 7388 aaKnown RBP7.8□□□□□ -1.16
SMAD1-201ENST00000302085 KRTAP19-4Q3LI73 84 aa7.79□□□□□ -1.16
SMAD1-201ENST00000302085 KRTAP4-7Q9BYR0 210 aa7.77□□□□□ -1.17
SMAD1-201ENST00000302085 SPRR2FQ96RM1 72 aa7.71□□□□□ -1.18
SMAD1-201ENST00000302085 KRTAP19-3Q7Z4W3 81 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms