RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 KRTAP13-3Q3SY46 172 aa4.69□□□□□ -1.66
VPS4B-201ENST00000238497 ATP11AUNQ6ZP68 121 aa4.69□□□□□ -1.66
VPS4B-201ENST00000238497 A0A0A0MQY5 61 aa4.68□□□□□ -1.66
VPS4B-201ENST00000238497 KRTAP3-3Q9BYR6 98 aa4.68□□□□□ -1.66
VPS4B-201ENST00000238497 KRTAP3-2Q9BYR7 98 aa4.68□□□□□ -1.66
VPS4B-201ENST00000238497 A6NN06 94 aa4.67□□□□□ -1.66
VPS4B-201ENST00000238497 A0A1B0GU69 56 aa4.66□□□□□ -1.66
VPS4B-201ENST00000238497 SPINK7P58062 85 aa4.66□□□□□ -1.66
VPS4B-201ENST00000238497 RPS29P62273 56 aaKnown RBP4.64□□□□□ -1.67
VPS4B-201ENST00000238497 ADM2Q7Z4H4 148 aa4.64□□□□□ -1.67
VPS4B-201ENST00000238497 DMAC1Q96GE9 116 aa4.64□□□□□ -1.67
VPS4B-201ENST00000238497 SEC61BP60468 96 aaKnown RBP4.63□□□□□ -1.67
VPS4B-201ENST00000238497 LINC01554Q52M75 96 aa4.63□□□□□ -1.67
VPS4B-201ENST00000238497 LCE2DQ5TA82 110 aaPredicted RBP4.63□□□□□ -1.67
VPS4B-201ENST00000238497 FAT4Q6V0I7 4981 aa4.62□□□□□ -1.67
VPS4B-201ENST00000238497 LINC01558Q9Y6Z2 57 aa4.61□□□□□ -1.67
VPS4B-201ENST00000238497 XP32Q5T750 250 aa4.59□□□□□ -1.67
VPS4B-201ENST00000238497 Q75L30 129 aa4.57□□□□□ -1.68
VPS4B-201ENST00000238497 A8MUU9 505 aa4.56□□□□□ -1.68
VPS4B-201ENST00000238497 CDC42SE1Q9NRR8 79 aa4.56□□□□□ -1.68
VPS4B-201ENST00000238497 C20orf166-AS1Q96NR2 134 aa4.55□□□□□ -1.68
VPS4B-201ENST00000238497 KRTAP4-1Q9BYQ7 146 aa4.53□□□□□ -1.68
VPS4B-201ENST00000238497 MUC17Q685J3 4493 aa4.52□□□□□ -1.69
VPS4B-201ENST00000238497 UQCR11O14957 56 aa4.5□□□□□ -1.69
VPS4B-201ENST00000238497 MIR22HGQ0VDD5 57 aa4.5□□□□□ -1.69
VPS4B-201ENST00000238497 COX6B2Q6YFQ2 88 aa4.5□□□□□ -1.69
VPS4B-201ENST00000238497 KRTAP3-1Q9BYR8 98 aa4.49□□□□□ -1.69
VPS4B-201ENST00000238497 RPL37P61927 97 aaKnown RBP4.47□□□□□ -1.69
VPS4B-201ENST00000238497 CSAG1Q6PB30 78 aa4.46□□□□□ -1.69
VPS4B-201ENST00000238497 SPATA8Q6RVD6 105 aa4.46□□□□□ -1.7
VPS4B-201ENST00000238497 M0R2T5 61 aa4.45□□□□□ -1.7
VPS4B-201ENST00000238497 LCE2AQ5TA79 106 aaPredicted RBP4.45□□□□□ -1.7
VPS4B-201ENST00000238497 A0A0D9SG42 100 aa4.44□□□□□ -1.7
VPS4B-201ENST00000238497 A0A1B0GU33 70 aa4.42□□□□□ -1.7
VPS4B-201ENST00000238497 KRTAP9-2Q9BYQ4 174 aa4.41□□□□□ -1.7
VPS4B-201ENST00000238497 FSIP2Q5CZC0 6907 aa4.39□□□□□ -1.71
VPS4B-201ENST00000238497 S4R3F8 94 aa4.39□□□□□ -1.71
VPS4B-201ENST00000238497 LCE2CQ5TA81 110 aa4.35□□□□□ -1.71
VPS4B-201ENST00000238497 CRIPTQ9P021 101 aa4.35□□□□□ -1.71
VPS4B-201ENST00000238497 MT1HP80294 61 aa4.34□□□□□ -1.71
VPS4B-201ENST00000238497 H1FX-AS1Q4G0G2 97 aa4.33□□□□□ -1.72
VPS4B-201ENST00000238497 H0YAA0 97 aa4.33□□□□□ -1.72
VPS4B-201ENST00000238497 KRTAP19-2Q3LHN2 52 aa4.32□□□□□ -1.72
VPS4B-201ENST00000238497 ROMO1P60602 79 aa4.31□□□□□ -1.72
VPS4B-201ENST00000238497 P0C880 135 aa4.3□□□□□ -1.72
VPS4B-201ENST00000238497 K7ERS5 55 aa4.29□□□□□ -1.72
VPS4B-201ENST00000238497 SPINT4Q6UDR6 99 aa4.28□□□□□ -1.72
VPS4B-201ENST00000238497 KRTAP10-6P60371 365 aaPredicted RBP4.26□□□□□ -1.73
VPS4B-201ENST00000238497 FLGP20930 4061 aaPredicted RBP4.25□□□□□ -1.73
VPS4B-201ENST00000238497 KRTAP9-6A0A140TA67 174 aa4.25□□□□□ -1.73
VPS4B-201ENST00000238497 KRTAP13-4Q3LI77 160 aa4.23□□□□□ -1.73
VPS4B-201ENST00000238497 LORP23490 312 aaPredicted RBP4.22□□□□□ -1.73
VPS4B-201ENST00000238497 NDUFAF8A1L188 74 aa4.19□□□□□ -1.74
VPS4B-201ENST00000238497 CRCT1Q9UGL9 99 aa4.18□□□□□ -1.74
VPS4B-201ENST00000238497 M0QZ58 72 aa4.17□□□□□ -1.74
VPS4B-201ENST00000238497 KRTAP25-1Q3LHN0 102 aa4.16□□□□□ -1.74
VPS4B-201ENST00000238497 R4GN34 69 aa4.16□□□□□ -1.74
VPS4B-201ENST00000238497 LCE2BO14633 110 aa4.16□□□□□ -1.74
VPS4B-201ENST00000238497 KRTAP10-10P60014 251 aa4.12□□□□□ -1.75
VPS4B-201ENST00000238497 KRTAP12-2P59991 146 aa4.1□□□□□ -1.75
VPS4B-201ENST00000238497 KRTAP9-8Q9BYQ0 159 aa4.08□□□□□ -1.76
VPS4B-201ENST00000238497 C10orf95Q9H7T3 257 aa4.08□□□□□ -1.76
VPS4B-201ENST00000238497 MT2AP02795 61 aa4.07□□□□□ -1.76
VPS4B-201ENST00000238497 USH2AO75445 5202 aa4.05□□□□□ -1.76
VPS4B-201ENST00000238497 MT1FP04733 61 aa4.04□□□□□ -1.76
VPS4B-201ENST00000238497 LUZP6Q538Z0 58 aa4.03□□□□□ -1.76
VPS4B-201ENST00000238497 KRTAP12-1P59990 96 aa4.02□□□□□ -1.77
VPS4B-201ENST00000238497 CAMK2N1Q7Z7J9 78 aa4.01□□□□□ -1.77
VPS4B-201ENST00000238497 SSPOA2VEC9 5147 aa4□□□□□ -1.77
VPS4B-201ENST00000238497 KRTAP9-3Q9BYQ3 159 aa3.95□□□□□ -1.78
VPS4B-201ENST00000238497 KRTAP19-1Q8IUB9 90 aa3.91□□□□□ -1.78
VPS4B-201ENST00000238497 FCGBPQ9Y6R7 5405 aaPredicted RBP3.91□□□□□ -1.78
VPS4B-201ENST00000238497 KRTAP15-1Q3LI76 137 aa3.87□□□□□ -1.79
VPS4B-201ENST00000238497 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.87□□□□□ -1.79
VPS4B-201ENST00000238497 KRTAP9-7A8MTY7 169 aa3.84□□□□□ -1.79
VPS4B-201ENST00000238497 KRTAP23-1A1A580 65 aa3.83□□□□□ -1.8
VPS4B-201ENST00000238497 MACF1Q9UPN3 7388 aaKnown RBP3.82□□□□□ -1.8
VPS4B-201ENST00000238497 SYNE2Q8WXH0 6885 aaKnown RBP3.81□□□□□ -1.8
VPS4B-201ENST00000238497 PLAC4Q8WY50 150 aa3.79□□□□□ -1.8
VPS4B-201ENST00000238497 KRTAP19-6Q3LI70 58 aa3.77□□□□□ -1.81
VPS4B-201ENST00000238497 TNP1P09430 55 aa3.7□□□□□ -1.82
VPS4B-201ENST00000238497 SPRR2GQ9BYE4 73 aa3.69□□□□□ -1.82
VPS4B-201ENST00000238497 MT1BP07438 61 aa3.69□□□□□ -1.82
VPS4B-201ENST00000238497 KRTAP19-8Q3LI54 63 aa3.65□□□□□ -1.83
VPS4B-201ENST00000238497 KRTAP10-5P60370 271 aa3.59□□□□□ -1.83
VPS4B-201ENST00000238497 KRTAP6-3Q3LI67 103 aa3.59□□□□□ -1.84
VPS4B-201ENST00000238497 MUC12Q9UKN1 5478 aa3.55□□□□□ -1.84
VPS4B-201ENST00000238497 PRO2289Q9P1D8 64 aa3.55□□□□□ -1.84
VPS4B-201ENST00000238497 PP632Q6XCG6 107 aa3.54□□□□□ -1.84
VPS4B-201ENST00000238497 KMT2DO14686 5537 aa3.51□□□□□ -1.85
VPS4B-201ENST00000238497 LCE3AQ5TA76 89 aa3.51□□□□□ -1.85
VPS4B-201ENST00000238497 NEBP20929 6669 aa3.5□□□□□ -1.85
VPS4B-201ENST00000238497 MDN1Q9NU22 5596 aa3.47□□□□□ -1.85
VPS4B-201ENST00000238497 MT1XP80297 61 aa3.47□□□□□ -1.85
VPS4B-201ENST00000238497 SPRR2FQ96RM1 72 aa3.45□□□□□ -1.86
VPS4B-201ENST00000238497 KRTAP8-1Q8IUC2 63 aa3.43□□□□□ -1.86
VPS4B-201ENST00000238497 KRTAP10-7P60409 375 aaPredicted RBP3.41□□□□□ -1.86
VPS4B-201ENST00000238497 KRTAP10-12P60413 245 aa3.41□□□□□ -1.86
VPS4B-201ENST00000238497 KRTAP5-9P26371 169 aa3.38□□□□□ -1.87
VPS4B-201ENST00000238497 KRTAP4-8A0A0G2JLE6 195 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms