RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 KRTAP3-1Q9BYR8 98 aa9.34□□□□□ -0.91
VIM-201ENST00000224237 MUC17Q685J3 4493 aa9.25□□□□□ -0.93
VIM-201ENST00000224237 A6NED7 52 aa9.23□□□□□ -0.93
VIM-201ENST00000224237 KRTAP4-1Q9BYQ7 146 aa9.21□□□□□ -0.93
VIM-201ENST00000224237 RBM12B-AS1Q9P1G2 102 aa9.2□□□□□ -0.94
VIM-201ENST00000224237 A0A1B0GU69 56 aa9.17□□□□□ -0.94
VIM-201ENST00000224237 SPTSSBQ8NFR3 76 aa9.16□□□□□ -0.94
VIM-201ENST00000224237 LCA10Q71F78 164 aa9.15□□□□□ -0.95
VIM-201ENST00000224237 CDC42SE1Q9NRR8 79 aa9.14□□□□□ -0.95
VIM-201ENST00000224237 H1FX-AS1Q4G0G2 97 aa9.11□□□□□ -0.95
VIM-201ENST00000224237 A8MU10 97 aa9.1□□□□□ -0.95
VIM-201ENST00000224237 SEC61GP60059 68 aa9.1□□□□□ -0.95
VIM-201ENST00000224237 MUC2Q02817 5179 aa9.08□□□□□ -0.96
VIM-201ENST00000224237 S4R3F8 94 aa9.08□□□□□ -0.96
VIM-201ENST00000224237 PMAIP1Q13794 54 aa9.04□□□□□ -0.96
VIM-201ENST00000224237 UBR4Q5T4S7 5183 aa9.02□□□□□ -0.97
VIM-201ENST00000224237 KRTAP3-3Q9BYR6 98 aa9.01□□□□□ -0.97
VIM-201ENST00000224237 UQCR11O14957 56 aa8.99□□□□□ -0.97
VIM-201ENST00000224237 SPATA8Q6RVD6 105 aa8.96□□□□□ -0.98
VIM-201ENST00000224237 KRTAP19-2Q3LHN2 52 aa8.93□□□□□ -0.98
VIM-201ENST00000224237 MIR22HGQ0VDD5 57 aa8.9□□□□□ -0.98
VIM-201ENST00000224237 RNF213Q63HN8 5207 aa8.9□□□□□ -0.98
VIM-201ENST00000224237 CSAG1Q6PB30 78 aa8.86□□□□□ -0.99
VIM-201ENST00000224237 A6NN06 94 aa8.83□□□□□ -1
VIM-201ENST00000224237 A0A1B0GU33 70 aa8.77□□□□□ -1.01
VIM-201ENST00000224237 KTN1-AS1Q86SY8 53 aa8.77□□□□□ -1.01
VIM-201ENST00000224237 FLGP20930 4061 aaPredicted RBP8.74□□□□□ -1.01
VIM-201ENST00000224237 LCE2CQ5TA81 110 aa8.73□□□□□ -1.01
VIM-201ENST00000224237 KRTAP10-6P60371 365 aaPredicted RBP8.7□□□□□ -1.02
VIM-201ENST00000224237 FAT4Q6V0I7 4981 aa8.7□□□□□ -1.02
VIM-201ENST00000224237 KRTAP3-2Q9BYR7 98 aa8.7□□□□□ -1.02
VIM-201ENST00000224237 H0YAA0 97 aa8.69□□□□□ -1.02
VIM-201ENST00000224237 ADM2Q7Z4H4 148 aa8.68□□□□□ -1.02
VIM-201ENST00000224237 P0C880 135 aa8.63□□□□□ -1.03
VIM-201ENST00000224237 MT1HP80294 61 aa8.55□□□□□ -1.04
VIM-201ENST00000224237 KRTAP13-4Q3LI77 160 aa8.47□□□□□ -1.05
VIM-201ENST00000224237 M0R2T5 61 aa8.46□□□□□ -1.06
VIM-201ENST00000224237 M0QZ58 72 aa8.45□□□□□ -1.06
VIM-201ENST00000224237 K7ERS5 55 aa8.44□□□□□ -1.06
VIM-201ENST00000224237 R4GN34 69 aa8.38□□□□□ -1.07
VIM-201ENST00000224237 LORP23490 312 aaPredicted RBP8.34□□□□□ -1.07
VIM-201ENST00000224237 A0A0D9SG42 100 aa8.34□□□□□ -1.07
VIM-201ENST00000224237 PRAC1Q96KF2 57 aa8.3□□□□□ -1.08
VIM-201ENST00000224237 CRIPTQ9P021 101 aa8.29□□□□□ -1.08
VIM-201ENST00000224237 KRTAP9-8Q9BYQ0 159 aa8.22□□□□□ -1.09
VIM-201ENST00000224237 LINC01554Q52M75 96 aa8.21□□□□□ -1.09
VIM-201ENST00000224237 MT2AP02795 61 aa8.21□□□□□ -1.1
VIM-201ENST00000224237 LCE2AQ5TA79 106 aaPredicted RBP8.2□□□□□ -1.1
VIM-201ENST00000224237 MT1FP04733 61 aa8.18□□□□□ -1.1
VIM-201ENST00000224237 KRTAP12-1P59990 96 aa8.17□□□□□ -1.1
VIM-201ENST00000224237 KRTAP12-2P59991 146 aa8.15□□□□□ -1.11
VIM-201ENST00000224237 ROMO1P60602 79 aa8.15□□□□□ -1.11
VIM-201ENST00000224237 SPINT4Q6UDR6 99 aa8.14□□□□□ -1.11
VIM-201ENST00000224237 KRTAP10-10P60014 251 aa8.13□□□□□ -1.11
VIM-201ENST00000224237 SPRR2GQ9BYE4 73 aa8.08□□□□□ -1.12
VIM-201ENST00000224237 KRTAP25-1Q3LHN0 102 aa8.04□□□□□ -1.12
VIM-201ENST00000224237 KRTAP19-1Q8IUB9 90 aa8.03□□□□□ -1.12
VIM-201ENST00000224237 KRTAP9-3Q9BYQ3 159 aa7.92□□□□□ -1.14
VIM-201ENST00000224237 CAMK2N1Q7Z7J9 78 aa7.85□□□□□ -1.15
VIM-201ENST00000224237 KRTAP19-8Q3LI54 63 aa7.84□□□□□ -1.15
VIM-201ENST00000224237 PLAC4Q8WY50 150 aa7.84□□□□□ -1.15
VIM-201ENST00000224237 H3BS24 57 aa7.79□□□□□ -1.16
VIM-201ENST00000224237 LCE2BO14633 110 aa7.73□□□□□ -1.17
VIM-201ENST00000224237 MT1BP07438 61 aa7.72□□□□□ -1.17
VIM-201ENST00000224237 KRTAP9-2Q9BYQ4 174 aa7.71□□□□□ -1.18
VIM-201ENST00000224237 C10orf95Q9H7T3 257 aa7.71□□□□□ -1.18
VIM-201ENST00000224237 USH2AO75445 5202 aa7.57□□□□□ -1.2
VIM-201ENST00000224237 KRTAP9-6A0A140TA67 174 aa7.53□□□□□ -1.2
VIM-201ENST00000224237 MT1XP80297 61 aa7.5□□□□□ -1.21
VIM-201ENST00000224237 TNP1P09430 55 aa7.49□□□□□ -1.21
VIM-201ENST00000224237 KRTAP10-5P60370 271 aa7.49□□□□□ -1.21
VIM-201ENST00000224237 PRO2289Q9P1D8 64 aa7.45□□□□□ -1.22
VIM-201ENST00000224237 PP632Q6XCG6 107 aa7.42□□□□□ -1.22
VIM-201ENST00000224237 LCE2DQ5TA82 110 aaPredicted RBP7.39□□□□□ -1.23
VIM-201ENST00000224237 FSIP2Q5CZC0 6907 aa7.34□□□□□ -1.23
VIM-201ENST00000224237 SSPOA2VEC9 5147 aa7.32□□□□□ -1.24
VIM-201ENST00000224237 KRTAP23-1A1A580 65 aa7.31□□□□□ -1.24
VIM-201ENST00000224237 CRCT1Q9UGL9 99 aa7.26□□□□□ -1.25
VIM-201ENST00000224237 KRTAP15-1Q3LI76 137 aa7.24□□□□□ -1.25
VIM-201ENST00000224237 KRTAP10-7P60409 375 aaPredicted RBP7.2□□□□□ -1.26
VIM-201ENST00000224237 KRTAP19-6Q3LI70 58 aa7.2□□□□□ -1.26
VIM-201ENST00000224237 KRTAP10-12P60413 245 aa7.16□□□□□ -1.26
VIM-201ENST00000224237 LCE3AQ5TA76 89 aa7.14□□□□□ -1.27
VIM-201ENST00000224237 FCGBPQ9Y6R7 5405 aaPredicted RBP7.01□□□□□ -1.29
VIM-201ENST00000224237 KRTAP8-1Q8IUC2 63 aa7□□□□□ -1.29
VIM-201ENST00000224237 NDUFAF8A1L188 74 aa7□□□□□ -1.29
VIM-201ENST00000224237 KMT2DO14686 5537 aa7□□□□□ -1.29
VIM-201ENST00000224237 KRTAP4-8A0A0G2JLE6 195 aa6.94□□□□□ -1.3
VIM-201ENST00000224237 KRTAP4-8Q9BYQ9 185 aa6.94□□□□□ -1.3
VIM-201ENST00000224237 KRTAP12-3P60328 96 aa6.86□□□□□ -1.31
VIM-201ENST00000224237 KRTAP19-5Q3LI72 72 aa6.79□□□□□ -1.32
VIM-201ENST00000224237 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.77□□□□□ -1.33
VIM-201ENST00000224237 KRTAP9-7A8MTY7 169 aa6.75□□□□□ -1.33
VIM-201ENST00000224237 LUZP6Q538Z0 58 aa6.74□□□□□ -1.33
VIM-201ENST00000224237 SPRR5A0A1B0GTR4 108 aa6.73□□□□□ -1.33
VIM-201ENST00000224237 KRTAP19-7Q3SYF9 63 aa6.68□□□□□ -1.34
VIM-201ENST00000224237 MACF1Q9UPN3 7388 aaKnown RBP6.68□□□□□ -1.34
VIM-201ENST00000224237 MT1EP04732 61 aa6.57□□□□□ -1.36
VIM-201ENST00000224237 SYNE2Q8WXH0 6885 aaKnown RBP6.5□□□□□ -1.37
VIM-201ENST00000224237 A0A0A0MQY5 61 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms