RNA–Protein interactions for RNA: ENST00000621856.1

SPAST-204, Transcript of spastin, humanhuman

TSL 1 (best) BASIC

Gene SPAST, Length 1,715 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-204ENST00000621856 OCR1Q9BZK8 76 aa12.3□□□□□ -0.44
SPAST-204ENST00000621856 C8orf17Q9NRJ1 99 aa12.29□□□□□ -0.44
SPAST-204ENST00000621856 RYR1P21817 5038 aa12.27□□□□□ -0.45
SPAST-204ENST00000621856 hDV103S1A0JD37 113 aa12.26□□□□□ -0.45
SPAST-204ENST00000621856 RPS29P62273 56 aaKnown RBP12.25□□□□□ -0.45
SPAST-204ENST00000621856 KRTAP17-1Q9BYP8 105 aa12.24□□□□□ -0.45
SPAST-204ENST00000621856 Q8N1X5 172 aa12.23□□□□□ -0.45
SPAST-204ENST00000621856 C20orf197Q8N268 126 aa12.21□□□□□ -0.45
SPAST-204ENST00000621856 NOTCH2NLQ7Z3S9 236 aa12.2□□□□□ -0.46
SPAST-204ENST00000621856 C8orf87E5RJ46 101 aa12.18□□□□□ -0.46
SPAST-204ENST00000621856 EPPK1P58107 5090 aaKnown RBP12.17□□□□□ -0.46
SPAST-204ENST00000621856 TMEM254Q8TBM7 123 aa12.15□□□□□ -0.46
SPAST-204ENST00000621856 KIAA1109Q2LD37 5005 aa12.15□□□□□ -0.46
SPAST-204ENST00000621856 MRPL34Q9BQ48 92 aaKnown RBP12.14□□□□□ -0.47
SPAST-204ENST00000621856 LINC00313P59037 77 aa12.12□□□□□ -0.47
SPAST-204ENST00000621856 KRTAP10-8P60410 259 aa12.11□□□□□ -0.47
SPAST-204ENST00000621856 SNURFQ9Y675 71 aa12.11□□□□□ -0.47
SPAST-204ENST00000621856 NDUFS5O43920 106 aa12.11□□□□□ -0.47
SPAST-204ENST00000621856 CYSTM1Q9H1C7 97 aa12.1□□□□□ -0.47
SPAST-204ENST00000621856 C5orf47Q569G3 176 aa12.08□□□□□ -0.47
SPAST-204ENST00000621856 KLKP1Q107X0 134 aa12.08□□□□□ -0.48
SPAST-204ENST00000621856 TP53AIP1Q9HCN2 124 aa12.06□□□□□ -0.48
SPAST-204ENST00000621856 A0A0U1RQV1 116 aa12.05□□□□□ -0.48
SPAST-204ENST00000621856 MP68P56378 58 aa12.03□□□□□ -0.48
SPAST-204ENST00000621856 H0Y9P7 68 aa12.02□□□□□ -0.49
SPAST-204ENST00000621856 RETNLBQ9BQ08 111 aa12□□□□□ -0.49
SPAST-204ENST00000621856 LRP1Q07954 4544 aaKnown RBP12□□□□□ -0.49
SPAST-204ENST00000621856 FLG2Q5D862 2391 aaPredicted RBP11.99□□□□□ -0.49
SPAST-204ENST00000621856 TRAV22A0A0B4J277 110 aa11.98□□□□□ -0.49
SPAST-204ENST00000621856 KRTAP16-1A8MUX0 517 aa11.96□□□□□ -0.49
SPAST-204ENST00000621856 NDUFC1O43677 76 aa11.96□□□□□ -0.49
SPAST-204ENST00000621856 TNXBP22105 4242 aa11.96□□□□□ -0.5
SPAST-204ENST00000621856 FAT3Q8TDW7 4589 aa11.96□□□□□ -0.5
SPAST-204ENST00000621856 LINC00208Q96KT6 92 aa11.95□□□□□ -0.5
SPAST-204ENST00000621856 H7BZZ5 65 aa11.94□□□□□ -0.5
SPAST-204ENST00000621856 H3BPC8 53 aa11.93□□□□□ -0.5
SPAST-204ENST00000621856 Q8N9P0 234 aaPredicted RBP11.93□□□□□ -0.5
SPAST-204ENST00000621856 MT1HL1P0DM35 61 aa11.92□□□□□ -0.5
SPAST-204ENST00000621856 TMEM258P61165 79 aa11.92□□□□□ -0.5
SPAST-204ENST00000621856 ZCCHC13Q8WW36 166 aaKnown RBP11.92□□□□□ -0.5
SPAST-204ENST00000621856 KRTAP4-5Q9BYR2 181 aa11.91□□□□□ -0.5
SPAST-204ENST00000621856 C1orf64Q8NEQ6 169 aa11.89□□□□□ -0.51
SPAST-204ENST00000621856 OXTP01178 125 aa11.89□□□□□ -0.51
SPAST-204ENST00000621856 C9orf92A6NGG3 77 aa11.87□□□□□ -0.51
SPAST-204ENST00000621856 Q5W150 140 aa11.84□□□□□ -0.51
SPAST-204ENST00000621856 FAM236DA0A1B0GTK5 79 aa11.8□□□□□ -0.52
SPAST-204ENST00000621856 FAM236CP0DP71 79 aa11.8□□□□□ -0.52
SPAST-204ENST00000621856 FP248Q71RG6 208 aaPredicted RBP11.8□□□□□ -0.52
SPAST-204ENST00000621856 DMBT1Q9UGM3 2413 aaPredicted RBP11.79□□□□□ -0.52
SPAST-204ENST00000621856 KRTAP13-3Q3SY46 172 aa11.79□□□□□ -0.52
SPAST-204ENST00000621856 MYCBP2O75592 4640 aa11.78□□□□□ -0.52
SPAST-204ENST00000621856 LOC101927531A0A1B0GV80 90 aa11.74□□□□□ -0.53
SPAST-204ENST00000621856 IGLV7-46A0A075B6I9 117 aa11.72□□□□□ -0.53
SPAST-204ENST00000621856 ATP5EP56381 51 aaPredicted RBP11.72□□□□□ -0.53
SPAST-204ENST00000621856 BIRC6Q9NR09 4857 aa11.71□□□□□ -0.53
SPAST-204ENST00000621856 C20orf166-AS1Q96NR2 134 aa11.71□□□□□ -0.54
SPAST-204ENST00000621856 A8MUU9 505 aa11.7□□□□□ -0.54
SPAST-204ENST00000621856 PCOTHQ58A44 107 aa11.7□□□□□ -0.54
SPAST-204ENST00000621856 PRR4Q16378 134 aa11.65□□□□□ -0.54
SPAST-204ENST00000621856 CYP4F30PQ9H0H9 118 aa11.65□□□□□ -0.54
SPAST-204ENST00000621856 IGKV2-30P06310 120 aa11.63□□□□□ -0.55
SPAST-204ENST00000621856 SPANXA2-OT1Q8N9U9 137 aa11.61□□□□□ -0.55
SPAST-204ENST00000621856 J3QL48 77 aa11.6□□□□□ -0.55
SPAST-204ENST00000621856 HERC2O95714 4834 aa11.6□□□□□ -0.55
SPAST-204ENST00000621856 Q75L30 129 aa11.6□□□□□ -0.55
SPAST-204ENST00000621856 IGKV2D-30A0A075B6S6 120 aa11.59□□□□□ -0.55
SPAST-204ENST00000621856 SERP1Q9Y6X1 66 aa11.57□□□□□ -0.56
SPAST-204ENST00000621856 RPS28P62857 69 aaKnown RBP11.54□□□□□ -0.56
SPAST-204ENST00000621856 ABCA13Q86UQ4 5058 aa11.53□□□□□ -0.56
SPAST-204ENST00000621856 XP32Q5T750 250 aa11.52□□□□□ -0.57
SPAST-204ENST00000621856 C7orf65Q6ZTY9 151 aa11.5□□□□□ -0.57
SPAST-204ENST00000621856 HRES1P13985 223 aa11.48□□□□□ -0.57
SPAST-204ENST00000621856 RPL37P61927 97 aaKnown RBP11.48□□□□□ -0.57
SPAST-204ENST00000621856 ATP11AUNQ6ZP68 121 aa11.46□□□□□ -0.57
SPAST-204ENST00000621856 TPRXLQ17RH7 258 aa11.45□□□□□ -0.58
SPAST-204ENST00000621856 SPINK7P58062 85 aa11.36□□□□□ -0.59
SPAST-204ENST00000621856 COA5Q86WW8 74 aa11.31□□□□□ -0.6
SPAST-204ENST00000621856 DMAC1Q96GE9 116 aa11.3□□□□□ -0.6
SPAST-204ENST00000621856 ACYP2P14621 99 aa11.28□□□□□ -0.6
SPAST-204ENST00000621856 SMIM26A0A096LP01 95 aa11.27□□□□□ -0.61
SPAST-204ENST00000621856 C4orf26Q17RF5 130 aa11.26□□□□□ -0.61
SPAST-204ENST00000621856 LPAP08519 4548 aa11.17□□□□□ -0.62
SPAST-204ENST00000621856 A8MUN3 132 aa11.15□□□□□ -0.62
SPAST-204ENST00000621856 CHKB-CPT1BH3BT56 60 aa11.15□□□□□ -0.63
SPAST-204ENST00000621856 MPLKIPQ8TAP9 179 aa11.12□□□□□ -0.63
SPAST-204ENST00000621856 LRP2P98164 4655 aa11.11□□□□□ -0.63
SPAST-204ENST00000621856 COX6B2Q6YFQ2 88 aa11.09□□□□□ -0.63
SPAST-204ENST00000621856 SEC61BP60468 96 aaKnown RBP11.08□□□□□ -0.64
SPAST-204ENST00000621856 KRTAP3-1Q9BYR8 98 aa11.06□□□□□ -0.64
SPAST-204ENST00000621856 PCLOQ9Y6V0 5065 aa11.05□□□□□ -0.64
SPAST-204ENST00000621856 Q1T7F1 81 aa11.01□□□□□ -0.65
SPAST-204ENST00000621856 V9GYY9 64 aa10.98□□□□□ -0.65
SPAST-204ENST00000621856 RBM12B-AS1Q9P1G2 102 aa10.89□□□□□ -0.67
SPAST-204ENST00000621856 SPTSSBQ8NFR3 76 aa10.87□□□□□ -0.67
SPAST-204ENST00000621856 LINC01558Q9Y6Z2 57 aa10.87□□□□□ -0.67
SPAST-204ENST00000621856 PSPHP1O15172 72 aa10.86□□□□□ -0.67
SPAST-204ENST00000621856 HERC1Q15751 4861 aa10.85□□□□□ -0.67
SPAST-204ENST00000621856 PRR15LQ9BU68 103 aa10.84□□□□□ -0.67
SPAST-204ENST00000621856 KRTAP4-1Q9BYQ7 146 aa10.81□□□□□ -0.68
SPAST-204ENST00000621856 MUC17Q685J3 4493 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 125.7 ms