RNA–Protein interactions for RNA: ENST00000617641.4

PCDHGC3-205, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 1 (best) BASIC

Gene PCDHGC3, Length 2,346 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-205ENST00000617641 CASC2Q6XLA1 102 aa10.14□□□□□ -0.79
PCDHGC3-205ENST00000617641 TMEM254Q8TBM7 123 aa10.13□□□□□ -0.79
PCDHGC3-205ENST00000617641 APOBP04114 4563 aaKnown RBP10.12□□□□□ -0.79
PCDHGC3-205ENST00000617641 MMP24-AS1A0A0U1RRL7 71 aa10.11□□□□□ -0.79
PCDHGC3-205ENST00000617641 ATP5EP56381 51 aaPredicted RBP10.1□□□□□ -0.79
PCDHGC3-205ENST00000617641 PLA2G1BP04054 148 aaKnown RBP10.09□□□□□ -0.79
PCDHGC3-205ENST00000617641 SPINK6Q6UWN8 80 aa10.09□□□□□ -0.79
PCDHGC3-205ENST00000617641 IGHV6-1A0A0B4J1U7 121 aa10.07□□□□□ -0.8
PCDHGC3-205ENST00000617641 A0A1B0GVX0 72 aa10.07□□□□□ -0.8
PCDHGC3-205ENST00000617641 CDK2AP2O75956 126 aa10.07□□□□□ -0.8
PCDHGC3-205ENST00000617641 C8orf17Q9NRJ1 99 aa10.06□□□□□ -0.8
PCDHGC3-205ENST00000617641 hDV103S1A0JD37 113 aa10.05□□□□□ -0.8
PCDHGC3-205ENST00000617641 NDUFC1O43677 76 aa10.05□□□□□ -0.8
PCDHGC3-205ENST00000617641 MPLKIPQ8TAP9 179 aa10.05□□□□□ -0.8
PCDHGC3-205ENST00000617641 FAT1Q14517 4588 aa10.03□□□□□ -0.8
PCDHGC3-205ENST00000617641 ASB16-AS1Q495Z4 193 aa10.02□□□□□ -0.8
PCDHGC3-205ENST00000617641 C4orf48Q5BLP8 95 aa10.02□□□□□ -0.81
PCDHGC3-205ENST00000617641 TYMSOSQ8TAI1 123 aa10.02□□□□□ -0.81
PCDHGC3-205ENST00000617641 NOTCH2NLQ7Z3S9 236 aa10.01□□□□□ -0.81
PCDHGC3-205ENST00000617641 KRTAP10-4P60372 401 aaPredicted RBP10.01□□□□□ -0.81
PCDHGC3-205ENST00000617641 PRR26Q8N8Z3 221 aa9.99□□□□□ -0.81
PCDHGC3-205ENST00000617641 RYR3Q15413 4870 aa9.97□□□□□ -0.81
PCDHGC3-205ENST00000617641 ZCCHC13Q8WW36 166 aaKnown RBP9.95□□□□□ -0.82
PCDHGC3-205ENST00000617641 LIMD2Q9BT23 127 aa9.94□□□□□ -0.82
PCDHGC3-205ENST00000617641 H0Y9P7 68 aa9.93□□□□□ -0.82
PCDHGC3-205ENST00000617641 MP68P56378 58 aa9.93□□□□□ -0.82
PCDHGC3-205ENST00000617641 MRPL34Q9BQ48 92 aaKnown RBP9.93□□□□□ -0.82
PCDHGC3-205ENST00000617641 NDUFS5O43920 106 aa9.91□□□□□ -0.82
PCDHGC3-205ENST00000617641 LINC00208Q96KT6 92 aa9.91□□□□□ -0.82
PCDHGC3-205ENST00000617641 SPINK1P00995 79 aa9.9□□□□□ -0.82
PCDHGC3-205ENST00000617641 LINC00304Q8N9R0 145 aa9.89□□□□□ -0.83
PCDHGC3-205ENST00000617641 TRAV22A0A0B4J277 110 aa9.88□□□□□ -0.83
PCDHGC3-205ENST00000617641 TP53AIP1Q9HCN2 124 aa9.88□□□□□ -0.83
PCDHGC3-205ENST00000617641 C8orf87E5RJ46 101 aa9.87□□□□□ -0.83
PCDHGC3-205ENST00000617641 RBM12B-AS1Q9P1G2 102 aa9.87□□□□□ -0.83
PCDHGC3-205ENST00000617641 PKHD1L1Q86WI1 4243 aa9.84□□□□□ -0.83
PCDHGC3-205ENST00000617641 H3BPC8 53 aa9.84□□□□□ -0.83
PCDHGC3-205ENST00000617641 LINC00313P59037 77 aa9.84□□□□□ -0.83
PCDHGC3-205ENST00000617641 HSPG2P98160 4391 aa9.84□□□□□ -0.83
PCDHGC3-205ENST00000617641 C1orf64Q8NEQ6 169 aa9.83□□□□□ -0.84
PCDHGC3-205ENST00000617641 Q1T7F1 81 aa9.82□□□□□ -0.84
PCDHGC3-205ENST00000617641 FAM229AH3BQW9 127 aa9.81□□□□□ -0.84
PCDHGC3-205ENST00000617641 SPAG11AQ6PDA7 123 aa9.81□□□□□ -0.84
PCDHGC3-205ENST00000617641 KTN1-AS1Q86SY8 53 aa9.81□□□□□ -0.84
PCDHGC3-205ENST00000617641 RPS29P62273 56 aaKnown RBP9.79□□□□□ -0.84
PCDHGC3-205ENST00000617641 Q5VSD8 79 aa9.77□□□□□ -0.85
PCDHGC3-205ENST00000617641 Q5W150 140 aa9.75□□□□□ -0.85
PCDHGC3-205ENST00000617641 KRTAP16-1A8MUX0 517 aa9.74□□□□□ -0.85
PCDHGC3-205ENST00000617641 PRR4Q16378 134 aa9.74□□□□□ -0.85
PCDHGC3-205ENST00000617641 RYR1P21817 5038 aa9.73□□□□□ -0.85
PCDHGC3-205ENST00000617641 Q8N9P0 234 aaPredicted RBP9.73□□□□□ -0.85
PCDHGC3-205ENST00000617641 KRTAP13-3Q3SY46 172 aa9.71□□□□□ -0.85
PCDHGC3-205ENST00000617641 PSPHP1O15172 72 aa9.7□□□□□ -0.86
PCDHGC3-205ENST00000617641 PCOTHQ58A44 107 aa9.7□□□□□ -0.86
PCDHGC3-205ENST00000617641 KRTAP17-1Q9BYP8 105 aa9.7□□□□□ -0.86
PCDHGC3-205ENST00000617641 RETNLBQ9BQ08 111 aa9.67□□□□□ -0.86
PCDHGC3-205ENST00000617641 CYP4F30PQ9H0H9 118 aa9.66□□□□□ -0.86
PCDHGC3-205ENST00000617641 SPANXA2-OT1Q8N9U9 137 aa9.65□□□□□ -0.86
PCDHGC3-205ENST00000617641 LRP1Q07954 4544 aaKnown RBP9.65□□□□□ -0.86
PCDHGC3-205ENST00000617641 TNXBP22105 4242 aa9.64□□□□□ -0.87
PCDHGC3-205ENST00000617641 KIAA1109Q2LD37 5005 aa9.63□□□□□ -0.87
PCDHGC3-205ENST00000617641 LOC101927531A0A1B0GV80 90 aa9.63□□□□□ -0.87
PCDHGC3-205ENST00000617641 H3BS24 57 aa9.63□□□□□ -0.87
PCDHGC3-205ENST00000617641 Q8N1X5 172 aa9.62□□□□□ -0.87
PCDHGC3-205ENST00000617641 A8MU10 97 aa9.61□□□□□ -0.87
PCDHGC3-205ENST00000617641 EPPK1P58107 5090 aaKnown RBP9.61□□□□□ -0.87
PCDHGC3-205ENST00000617641 KRTAP10-8P60410 259 aa9.6□□□□□ -0.87
PCDHGC3-205ENST00000617641 IGLV7-46A0A075B6I9 117 aa9.59□□□□□ -0.87
PCDHGC3-205ENST00000617641 FLG2Q5D862 2391 aaPredicted RBP9.58□□□□□ -0.88
PCDHGC3-205ENST00000617641 A8MUN3 132 aa9.57□□□□□ -0.88
PCDHGC3-205ENST00000617641 C9orf92A6NGG3 77 aa9.57□□□□□ -0.88
PCDHGC3-205ENST00000617641 FAT3Q8TDW7 4589 aa9.55□□□□□ -0.88
PCDHGC3-205ENST00000617641 Q5VV11 94 aa9.54□□□□□ -0.88
PCDHGC3-205ENST00000617641 ATP11AUNQ6ZP68 121 aa9.54□□□□□ -0.88
PCDHGC3-205ENST00000617641 IGKV2-30P06310 120 aa9.52□□□□□ -0.89
PCDHGC3-205ENST00000617641 SPTSSBQ8NFR3 76 aa9.52□□□□□ -0.89
PCDHGC3-205ENST00000617641 A6NN06 94 aa9.51□□□□□ -0.89
PCDHGC3-205ENST00000617641 C7orf65Q6ZTY9 151 aa9.48□□□□□ -0.89
PCDHGC3-205ENST00000617641 CHKB-CPT1BH3BT56 60 aa9.47□□□□□ -0.89
PCDHGC3-205ENST00000617641 IGKV2D-30A0A075B6S6 120 aa9.47□□□□□ -0.89
PCDHGC3-205ENST00000617641 LCA10Q71F78 164 aa9.47□□□□□ -0.89
PCDHGC3-205ENST00000617641 HRES1P13985 223 aa9.45□□□□□ -0.9
PCDHGC3-205ENST00000617641 MYCBP2O75592 4640 aa9.45□□□□□ -0.9
PCDHGC3-205ENST00000617641 C20orf166-AS1Q96NR2 134 aa9.45□□□□□ -0.9
PCDHGC3-205ENST00000617641 A8MUU9 505 aa9.44□□□□□ -0.9
PCDHGC3-205ENST00000617641 COA5Q86WW8 74 aa9.44□□□□□ -0.9
PCDHGC3-205ENST00000617641 MT1HL1P0DM35 61 aa9.43□□□□□ -0.9
PCDHGC3-205ENST00000617641 DMBT1Q9UGM3 2413 aaPredicted RBP9.4□□□□□ -0.9
PCDHGC3-205ENST00000617641 PRR15LQ9BU68 103 aa9.35□□□□□ -0.91
PCDHGC3-205ENST00000617641 KRTAP4-5Q9BYR2 181 aa9.34□□□□□ -0.91
PCDHGC3-205ENST00000617641 Q75L30 129 aa9.33□□□□□ -0.92
PCDHGC3-205ENST00000617641 DMAC1Q96GE9 116 aa9.33□□□□□ -0.92
PCDHGC3-205ENST00000617641 A6NED7 52 aa9.33□□□□□ -0.92
PCDHGC3-205ENST00000617641 CDC42SE1Q9NRR8 79 aa9.32□□□□□ -0.92
PCDHGC3-205ENST00000617641 ACYP2P14621 99 aa9.3□□□□□ -0.92
PCDHGC3-205ENST00000617641 LINC01554Q52M75 96 aa9.22□□□□□ -0.93
PCDHGC3-205ENST00000617641 XP32Q5T750 250 aa9.22□□□□□ -0.93
PCDHGC3-205ENST00000617641 SPINK7P58062 85 aa9.21□□□□□ -0.93
PCDHGC3-205ENST00000617641 RPL37P61927 97 aaKnown RBP9.19□□□□□ -0.94
PCDHGC3-205ENST00000617641 ABCA13Q86UQ4 5058 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 117.6 ms