RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 KRTAP13-2Q52LG2 175 aa10.01□□□□□ -0.81
SHKBP1-216ENST00000598201 HSPG2P98160 4391 aa10□□□□□ -0.81
SHKBP1-216ENST00000598201 KRTAP1-4P0C5Y4 121 aa10□□□□□ -0.81
SHKBP1-216ENST00000598201 WFDC13Q8IUB5 93 aa10□□□□□ -0.81
SHKBP1-216ENST00000598201 SSBP3-AS1Q7Z2R9 100 aa9.99□□□□□ -0.81
SHKBP1-216ENST00000598201 KRTAP29-1A8MX34 341 aaPredicted RBP9.96□□□□□ -0.81
SHKBP1-216ENST00000598201 FAM229BQ4G0N7 80 aa9.96□□□□□ -0.81
SHKBP1-216ENST00000598201 SNURFQ9Y675 71 aa9.96□□□□□ -0.81
SHKBP1-216ENST00000598201 PMAIP1Q13794 54 aa9.95□□□□□ -0.82
SHKBP1-216ENST00000598201 CD164Q04900 197 aa9.94□□□□□ -0.82
SHKBP1-216ENST00000598201 Q8N1X5 172 aa9.94□□□□□ -0.82
SHKBP1-216ENST00000598201 KRTAP17-1Q9BYP8 105 aa9.94□□□□□ -0.82
SHKBP1-216ENST00000598201 FAM229AH3BQW9 127 aa9.94□□□□□ -0.82
SHKBP1-216ENST00000598201 CASC2Q6XLA1 102 aa9.92□□□□□ -0.82
SHKBP1-216ENST00000598201 TMEM254Q8TBM7 123 aa9.92□□□□□ -0.82
SHKBP1-216ENST00000598201 MMP24-AS1A0A0U1RRL7 71 aa9.91□□□□□ -0.82
SHKBP1-216ENST00000598201 NDUFB1O75438 58 aa9.91□□□□□ -0.82
SHKBP1-216ENST00000598201 Q5VSD8 79 aa9.91□□□□□ -0.82
SHKBP1-216ENST00000598201 FAT1Q14517 4588 aa9.9□□□□□ -0.82
SHKBP1-216ENST00000598201 PLA2G1BP04054 148 aaKnown RBP9.89□□□□□ -0.83
SHKBP1-216ENST00000598201 SPINK6Q6UWN8 80 aa9.88□□□□□ -0.83
SHKBP1-216ENST00000598201 IGHV6-1A0A0B4J1U7 121 aa9.86□□□□□ -0.83
SHKBP1-216ENST00000598201 A0A1B0GVX0 72 aa9.86□□□□□ -0.83
SHKBP1-216ENST00000598201 HERC2O95714 4834 aa9.86□□□□□ -0.83
SHKBP1-216ENST00000598201 KRTAP10-4P60372 401 aaPredicted RBP9.86□□□□□ -0.83
SHKBP1-216ENST00000598201 C8orf17Q9NRJ1 99 aa9.85□□□□□ -0.83
SHKBP1-216ENST00000598201 hDV103S1A0JD37 113 aa9.84□□□□□ -0.83
SHKBP1-216ENST00000598201 ASB16-AS1Q495Z4 193 aa9.83□□□□□ -0.84
SHKBP1-216ENST00000598201 NOTCH2NLQ7Z3S9 236 aa9.83□□□□□ -0.84
SHKBP1-216ENST00000598201 MPLKIPQ8TAP9 179 aa9.83□□□□□ -0.84
SHKBP1-216ENST00000598201 KRTAP4-5Q9BYR2 181 aa9.83□□□□□ -0.84
SHKBP1-216ENST00000598201 TYMSOSQ8TAI1 123 aa9.81□□□□□ -0.84
SHKBP1-216ENST00000598201 PRR26Q8N8Z3 221 aa9.79□□□□□ -0.84
SHKBP1-216ENST00000598201 Q1T7F1 81 aa9.78□□□□□ -0.84
SHKBP1-216ENST00000598201 ZCCHC13Q8WW36 166 aaKnown RBP9.76□□□□□ -0.85
SHKBP1-216ENST00000598201 C4orf48Q5BLP8 95 aa9.73□□□□□ -0.85
SHKBP1-216ENST00000598201 MRPL34Q9BQ48 92 aaKnown RBP9.72□□□□□ -0.85
SHKBP1-216ENST00000598201 LIMD2Q9BT23 127 aa9.72□□□□□ -0.85
SHKBP1-216ENST00000598201 H0Y9P7 68 aa9.71□□□□□ -0.86
SHKBP1-216ENST00000598201 SPINK1P00995 79 aa9.7□□□□□ -0.86
SHKBP1-216ENST00000598201 MP68P56378 58 aa9.7□□□□□ -0.86
SHKBP1-216ENST00000598201 LINC00208Q96KT6 92 aa9.69□□□□□ -0.86
SHKBP1-216ENST00000598201 LINC00304Q8N9R0 145 aa9.68□□□□□ -0.86
SHKBP1-216ENST00000598201 PKHD1L1Q86WI1 4243 aa9.68□□□□□ -0.86
SHKBP1-216ENST00000598201 NDUFS5O43920 106 aa9.68□□□□□ -0.86
SHKBP1-216ENST00000598201 ABCA13Q86UQ4 5058 aa9.68□□□□□ -0.86
SHKBP1-216ENST00000598201 TRAV22A0A0B4J277 110 aa9.67□□□□□ -0.86
SHKBP1-216ENST00000598201 TP53AIP1Q9HCN2 124 aa9.67□□□□□ -0.86
SHKBP1-216ENST00000598201 C8orf87E5RJ46 101 aa9.65□□□□□ -0.86
SHKBP1-216ENST00000598201 LINC00313P59037 77 aa9.63□□□□□ -0.87
SHKBP1-216ENST00000598201 FLG2Q5D862 2391 aaPredicted RBP9.63□□□□□ -0.87
SHKBP1-216ENST00000598201 H3BPC8 53 aa9.62□□□□□ -0.87
SHKBP1-216ENST00000598201 C1orf64Q8NEQ6 169 aa9.62□□□□□ -0.87
SHKBP1-216ENST00000598201 SPAG11AQ6PDA7 123 aa9.62□□□□□ -0.87
SHKBP1-216ENST00000598201 RPS29P62273 56 aaKnown RBP9.6□□□□□ -0.87
SHKBP1-216ENST00000598201 PCLOQ9Y6V0 5065 aa9.6□□□□□ -0.87
SHKBP1-216ENST00000598201 KTN1-AS1Q86SY8 53 aa9.59□□□□□ -0.87
SHKBP1-216ENST00000598201 MYCBP2O75592 4640 aa9.57□□□□□ -0.88
SHKBP1-216ENST00000598201 KRTAP16-1A8MUX0 517 aa9.57□□□□□ -0.88
SHKBP1-216ENST00000598201 Q5W150 140 aa9.57□□□□□ -0.88
SHKBP1-216ENST00000598201 CYP4F30PQ9H0H9 118 aa9.56□□□□□ -0.88
SHKBP1-216ENST00000598201 Q8N9P0 234 aaPredicted RBP9.54□□□□□ -0.88
SHKBP1-216ENST00000598201 KRTAP13-3Q3SY46 172 aa9.54□□□□□ -0.88
SHKBP1-216ENST00000598201 LRP1Q07954 4544 aaKnown RBP9.53□□□□□ -0.88
SHKBP1-216ENST00000598201 PRR4Q16378 134 aa9.52□□□□□ -0.88
SHKBP1-216ENST00000598201 RBM12B-AS1Q9P1G2 102 aa9.52□□□□□ -0.88
SHKBP1-216ENST00000598201 PSPHP1O15172 72 aa9.51□□□□□ -0.89
SHKBP1-216ENST00000598201 TNXBP22105 4242 aa9.48□□□□□ -0.89
SHKBP1-216ENST00000598201 PCOTHQ58A44 107 aa9.48□□□□□ -0.89
SHKBP1-216ENST00000598201 FAT3Q8TDW7 4589 aa9.48□□□□□ -0.89
SHKBP1-216ENST00000598201 RETNLBQ9BQ08 111 aa9.46□□□□□ -0.89
SHKBP1-216ENST00000598201 J3QL48 77 aa9.44□□□□□ -0.9
SHKBP1-216ENST00000598201 KRTAP10-8P60410 259 aa9.44□□□□□ -0.9
SHKBP1-216ENST00000598201 Q5VV11 94 aa9.44□□□□□ -0.9
SHKBP1-216ENST00000598201 SPANXA2-OT1Q8N9U9 137 aa9.44□□□□□ -0.9
SHKBP1-216ENST00000598201 MT1HL1P0DM35 61 aa9.44□□□□□ -0.9
SHKBP1-216ENST00000598201 A8MUN3 132 aa9.43□□□□□ -0.9
SHKBP1-216ENST00000598201 ATP11AUNQ6ZP68 121 aa9.43□□□□□ -0.9
SHKBP1-216ENST00000598201 LOC101927531A0A1B0GV80 90 aa9.42□□□□□ -0.9
SHKBP1-216ENST00000598201 IGLV7-46A0A075B6I9 117 aa9.38□□□□□ -0.91
SHKBP1-216ENST00000598201 C9orf92A6NGG3 77 aa9.38□□□□□ -0.91
SHKBP1-216ENST00000598201 DMBT1Q9UGM3 2413 aaPredicted RBP9.36□□□□□ -0.91
SHKBP1-216ENST00000598201 A6NN06 94 aa9.36□□□□□ -0.91
SHKBP1-216ENST00000598201 CHKB-CPT1BH3BT56 60 aa9.34□□□□□ -0.91
SHKBP1-216ENST00000598201 A8MU10 97 aa9.33□□□□□ -0.92
SHKBP1-216ENST00000598201 IGKV2-30P06310 120 aa9.33□□□□□ -0.92
SHKBP1-216ENST00000598201 Q75L30 129 aa9.33□□□□□ -0.92
SHKBP1-216ENST00000598201 C7orf65Q6ZTY9 151 aa9.31□□□□□ -0.92
SHKBP1-216ENST00000598201 C20orf166-AS1Q96NR2 134 aa9.27□□□□□ -0.93
SHKBP1-216ENST00000598201 A8MUU9 505 aa9.27□□□□□ -0.93
SHKBP1-216ENST00000598201 LCA10Q71F78 164 aa9.27□□□□□ -0.93
SHKBP1-216ENST00000598201 SPTSSBQ8NFR3 76 aa9.27□□□□□ -0.93
SHKBP1-216ENST00000598201 IGKV2D-30A0A075B6S6 120 aa9.26□□□□□ -0.93
SHKBP1-216ENST00000598201 HRES1P13985 223 aa9.26□□□□□ -0.93
SHKBP1-216ENST00000598201 CDC42SE1Q9NRR8 79 aa9.26□□□□□ -0.93
SHKBP1-216ENST00000598201 PRR15LQ9BU68 103 aa9.25□□□□□ -0.93
SHKBP1-216ENST00000598201 COA5Q86WW8 74 aa9.23□□□□□ -0.93
SHKBP1-216ENST00000598201 HERC1Q15751 4861 aa9.21□□□□□ -0.94
SHKBP1-216ENST00000598201 A6NED7 52 aa9.2□□□□□ -0.94
SHKBP1-216ENST00000598201 DMAC1Q96GE9 116 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms