RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 DEFB116Q30KQ4 102 aa8.62□□□□□ -1.03
SS18-215ENST00000580642 PRR15Q8IV56 129 aa8.62□□□□□ -1.03
SS18-215ENST00000580642 A0A1B0GVX0 72 aa8.59□□□□□ -1.03
SS18-215ENST00000580642 C8orf87E5RJ46 101 aa8.58□□□□□ -1.04
SS18-215ENST00000580642 MT-ATP8P03928 68 aa8.58□□□□□ -1.04
SS18-215ENST00000580642 K7EQZ3 153 aa8.57□□□□□ -1.04
SS18-215ENST00000580642 HIST1H4AP62805 103 aaKnown RBP8.55□□□□□ -1.04
SS18-215ENST00000580642 PCLOQ9Y6V0 5065 aa8.55□□□□□ -1.04
SS18-215ENST00000580642 IGHV6-1A0A0B4J1U7 121 aa8.52□□□□□ -1.05
SS18-215ENST00000580642 Q8N9L7 120 aa8.52□□□□□ -1.05
SS18-215ENST00000580642 RETNLBQ9BQ08 111 aa8.52□□□□□ -1.05
SS18-215ENST00000580642 LINC00313P59037 77 aa8.51□□□□□ -1.05
SS18-215ENST00000580642 C8orf17Q9NRJ1 99 aa8.51□□□□□ -1.05
SS18-215ENST00000580642 IGLV7-46A0A075B6I9 117 aa8.49□□□□□ -1.05
SS18-215ENST00000580642 HCG22E2RYF7 251 aa8.49□□□□□ -1.05
SS18-215ENST00000580642 MMP24-AS1A0A0U1RRL7 71 aa8.48□□□□□ -1.05
SS18-215ENST00000580642 hDV103S1A0JD37 113 aa8.46□□□□□ -1.06
SS18-215ENST00000580642 TMEM254Q8TBM7 123 aa8.46□□□□□ -1.06
SS18-215ENST00000580642 A0A087WVE0 104 aa8.45□□□□□ -1.06
SS18-215ENST00000580642 PRR4Q16378 134 aa8.45□□□□□ -1.06
SS18-215ENST00000580642 CASC2Q6XLA1 102 aa8.45□□□□□ -1.06
SS18-215ENST00000580642 SCGB1A1P11684 91 aa8.43□□□□□ -1.06
SS18-215ENST00000580642 TPRXLQ17RH7 258 aa8.43□□□□□ -1.06
SS18-215ENST00000580642 MRPL34Q9BQ48 92 aaKnown RBP8.42□□□□□ -1.06
SS18-215ENST00000580642 KRTAP13-3Q3SY46 172 aa8.41□□□□□ -1.06
SS18-215ENST00000580642 NOTCH2NLQ7Z3S9 236 aa8.41□□□□□ -1.06
SS18-215ENST00000580642 KRTAP16-1A8MUX0 517 aa8.4□□□□□ -1.06
SS18-215ENST00000580642 FAM236AA0A1B0GUQ0 79 aa8.39□□□□□ -1.07
SS18-215ENST00000580642 FAM236BA0A1B0GV22 79 aa8.39□□□□□ -1.07
SS18-215ENST00000580642 WFDC13Q8IUB5 93 aa8.39□□□□□ -1.07
SS18-215ENST00000580642 Q8N9P0 234 aaPredicted RBP8.39□□□□□ -1.07
SS18-215ENST00000580642 SMIM20Q8N5G0 67 aa8.38□□□□□ -1.07
SS18-215ENST00000580642 TP53AIP1Q9HCN2 124 aa8.37□□□□□ -1.07
SS18-215ENST00000580642 ATOX1O00244 68 aa8.36□□□□□ -1.07
SS18-215ENST00000580642 C20orf166-AS1Q96NR2 134 aa8.36□□□□□ -1.07
SS18-215ENST00000580642 C9orf92A6NGG3 77 aa8.35□□□□□ -1.07
SS18-215ENST00000580642 A8MUU9 505 aa8.33□□□□□ -1.08
SS18-215ENST00000580642 Q75L30 129 aa8.33□□□□□ -1.08
SS18-215ENST00000580642 XP32Q5T750 250 aa8.3□□□□□ -1.08
SS18-215ENST00000580642 OCR1Q9BZK8 76 aa8.3□□□□□ -1.08
SS18-215ENST00000580642 UQCRQO14949 82 aa8.29□□□□□ -1.08
SS18-215ENST00000580642 NDUFS5O43920 106 aa8.28□□□□□ -1.08
SS18-215ENST00000580642 TRAV7A0A075B6U4 112 aa8.27□□□□□ -1.09
SS18-215ENST00000580642 HERC1Q15751 4861 aa8.26□□□□□ -1.09
SS18-215ENST00000580642 RPL37P61927 97 aaKnown RBP8.26□□□□□ -1.09
SS18-215ENST00000580642 C5orf47Q569G3 176 aa8.23□□□□□ -1.09
SS18-215ENST00000580642 SERP2Q8N6R1 65 aa8.23□□□□□ -1.09
SS18-215ENST00000580642 HMCN2Q8NDA2 5059 aa8.23□□□□□ -1.09
SS18-215ENST00000580642 ATP11AUNQ6ZP68 121 aa8.21□□□□□ -1.1
SS18-215ENST00000580642 ZCCHC13Q8WW36 166 aaKnown RBP8.21□□□□□ -1.1
SS18-215ENST00000580642 TRAV22A0A0B4J277 110 aa8.19□□□□□ -1.1
SS18-215ENST00000580642 H3BPC8 53 aa8.19□□□□□ -1.1
SS18-215ENST00000580642 ANAPC13Q9BS18 74 aa8.19□□□□□ -1.1
SS18-215ENST00000580642 MP68P56378 58 aa8.17□□□□□ -1.1
SS18-215ENST00000580642 SEC61BP60468 96 aaKnown RBP8.16□□□□□ -1.1
SS18-215ENST00000580642 COX7CP15954 63 aa8.15□□□□□ -1.1
SS18-215ENST00000580642 Q5W150 140 aa8.14□□□□□ -1.11
SS18-215ENST00000580642 H0Y9P7 68 aa8.13□□□□□ -1.11
SS18-215ENST00000580642 LOC101927531A0A1B0GV80 90 aa8.11□□□□□ -1.11
SS18-215ENST00000580642 LPAP08519 4548 aa8.11□□□□□ -1.11
SS18-215ENST00000580642 LRP2P98164 4655 aa8.09□□□□□ -1.11
SS18-215ENST00000580642 C1orf64Q8NEQ6 169 aa8.07□□□□□ -1.12
SS18-215ENST00000580642 IGKV2-30P06310 120 aa8.06□□□□□ -1.12
SS18-215ENST00000580642 PCOTHQ58A44 107 aa8.06□□□□□ -1.12
SS18-215ENST00000580642 LINC00208Q96KT6 92 aa8.06□□□□□ -1.12
SS18-215ENST00000580642 A0A0U1RQV1 116 aa8.05□□□□□ -1.12
SS18-215ENST00000580642 KLKP1Q107X0 134 aa8.05□□□□□ -1.12
SS18-215ENST00000580642 C7orf65Q6ZTY9 151 aa8.04□□□□□ -1.12
SS18-215ENST00000580642 C20orf197Q8N268 126 aa8.03□□□□□ -1.12
SS18-215ENST00000580642 CYP4F30PQ9H0H9 118 aa8.02□□□□□ -1.13
SS18-215ENST00000580642 NDUFC1O43677 76 aa8.01□□□□□ -1.13
SS18-215ENST00000580642 SPINK7P58062 85 aa8.01□□□□□ -1.13
SS18-215ENST00000580642 MUC17Q685J3 4493 aa8.01□□□□□ -1.13
SS18-215ENST00000580642 IGKV2D-30A0A075B6S6 120 aa7.98□□□□□ -1.13
SS18-215ENST00000580642 PCP4P48539 62 aa7.97□□□□□ -1.13
SS18-215ENST00000580642 SNURFQ9Y675 71 aa7.95□□□□□ -1.14
SS18-215ENST00000580642 CCDC179H3BU77 68 aa7.94□□□□□ -1.14
SS18-215ENST00000580642 SPANXA2-OT1Q8N9U9 137 aa7.88□□□□□ -1.15
SS18-215ENST00000580642 H7BZZ5 65 aa7.87□□□□□ -1.15
SS18-215ENST00000580642 HRES1P13985 223 aa7.86□□□□□ -1.15
SS18-215ENST00000580642 MPLKIPQ8TAP9 179 aa7.84□□□□□ -1.15
SS18-215ENST00000580642 RBM12B-AS1Q9P1G2 102 aa7.83□□□□□ -1.16
SS18-215ENST00000580642 UBR4Q5T4S7 5183 aa7.83□□□□□ -1.16
SS18-215ENST00000580642 LCE2BO14633 110 aa7.82□□□□□ -1.16
SS18-215ENST00000580642 KRTAP4-1Q9BYQ7 146 aa7.82□□□□□ -1.16
SS18-215ENST00000580642 A8MUN3 132 aa7.81□□□□□ -1.16
SS18-215ENST00000580642 CYSTM1Q9H1C7 97 aa7.81□□□□□ -1.16
SS18-215ENST00000580642 COX6B2Q6YFQ2 88 aa7.8□□□□□ -1.16
SS18-215ENST00000580642 TMEM258P61165 79 aa7.79□□□□□ -1.16
SS18-215ENST00000580642 ATP5EP56381 51 aaPredicted RBP7.78□□□□□ -1.16
SS18-215ENST00000580642 C4orf26Q17RF5 130 aa7.78□□□□□ -1.16
SS18-215ENST00000580642 DMAC1Q96GE9 116 aa7.75□□□□□ -1.17
SS18-215ENST00000580642 RNF213Q63HN8 5207 aa7.74□□□□□ -1.17
SS18-215ENST00000580642 FAM236DA0A1B0GTK5 79 aa7.7□□□□□ -1.18
SS18-215ENST00000580642 FAM236CP0DP71 79 aa7.7□□□□□ -1.18
SS18-215ENST00000580642 ACYP2P14621 99 aa7.7□□□□□ -1.18
SS18-215ENST00000580642 MUC2Q02817 5179 aa7.69□□□□□ -1.18
SS18-215ENST00000580642 H1FX-AS1Q4G0G2 97 aa7.68□□□□□ -1.18
SS18-215ENST00000580642 KRTAP3-1Q9BYR8 98 aa7.68□□□□□ -1.18
SS18-215ENST00000580642 KRTAP19-2Q3LHN2 52 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms