RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 A8MWP4 228 aa9.02□□□□□ -0.97
SS18-211ENST00000578954 LCE2AQ5TA79 106 aaPredicted RBP9.01□□□□□ -0.97
SS18-211ENST00000578954 IGKV3D-7A0A0C4DH55 119 aa8.98□□□□□ -0.97
SS18-211ENST00000578954 A0A1B0GVX0 72 aa8.97□□□□□ -0.97
SS18-211ENST00000578954 PRR15Q8IV56 129 aa8.97□□□□□ -0.97
SS18-211ENST00000578954 IGLV7-46A0A075B6I9 117 aa8.96□□□□□ -0.98
SS18-211ENST00000578954 K7EQZ3 153 aa8.96□□□□□ -0.98
SS18-211ENST00000578954 NDUFB1O75438 58 aa8.96□□□□□ -0.98
SS18-211ENST00000578954 HERC1Q15751 4861 aa8.94□□□□□ -0.98
SS18-211ENST00000578954 PRR4Q16378 134 aa8.93□□□□□ -0.98
SS18-211ENST00000578954 Q8N9L7 120 aa8.93□□□□□ -0.98
SS18-211ENST00000578954 C8orf87E5RJ46 101 aa8.92□□□□□ -0.98
SS18-211ENST00000578954 IGHV6-1A0A0B4J1U7 121 aa8.91□□□□□ -0.98
SS18-211ENST00000578954 MT-ATP8P03928 68 aa8.9□□□□□ -0.98
SS18-211ENST00000578954 TPRXLQ17RH7 258 aa8.9□□□□□ -0.98
SS18-211ENST00000578954 KRTAP13-3Q3SY46 172 aa8.9□□□□□ -0.98
SS18-211ENST00000578954 C8orf17Q9NRJ1 99 aa8.89□□□□□ -0.99
SS18-211ENST00000578954 NOTCH2NLQ7Z3S9 236 aa8.88□□□□□ -0.99
SS18-211ENST00000578954 IMUPQ9GZP8 106 aa8.88□□□□□ -0.99
SS18-211ENST00000578954 MMP24-AS1A0A0U1RRL7 71 aa8.87□□□□□ -0.99
SS18-211ENST00000578954 LINC00313P59037 77 aa8.87□□□□□ -0.99
SS18-211ENST00000578954 HMCN2Q8NDA2 5059 aa8.85□□□□□ -0.99
SS18-211ENST00000578954 KRTAP16-1A8MUX0 517 aa8.85□□□□□ -0.99
SS18-211ENST00000578954 HIST1H4AP62805 103 aaKnown RBP8.84□□□□□ -0.99
SS18-211ENST00000578954 HCG22E2RYF7 251 aa8.83□□□□□ -1
SS18-211ENST00000578954 C9orf92A6NGG3 77 aa8.82□□□□□ -1
SS18-211ENST00000578954 A0A087WVE0 104 aa8.81□□□□□ -1
SS18-211ENST00000578954 TMEM254Q8TBM7 123 aa8.81□□□□□ -1
SS18-211ENST00000578954 hDV103S1A0JD37 113 aa8.8□□□□□ -1
SS18-211ENST00000578954 XP32Q5T750 250 aa8.78□□□□□ -1
SS18-211ENST00000578954 CASC2Q6XLA1 102 aa8.78□□□□□ -1
SS18-211ENST00000578954 WFDC13Q8IUB5 93 aa8.78□□□□□ -1
SS18-211ENST00000578954 LCE2CQ5TA81 110 aa8.77□□□□□ -1.01
SS18-211ENST00000578954 C20orf166-AS1Q96NR2 134 aa8.77□□□□□ -1.01
SS18-211ENST00000578954 MRPL34Q9BQ48 92 aaKnown RBP8.77□□□□□ -1.01
SS18-211ENST00000578954 Q8N9P0 234 aaPredicted RBP8.76□□□□□ -1.01
SS18-211ENST00000578954 A8MUU9 505 aa8.75□□□□□ -1.01
SS18-211ENST00000578954 LPAP08519 4548 aa8.74□□□□□ -1.01
SS18-211ENST00000578954 Q75L30 129 aa8.73□□□□□ -1.01
SS18-211ENST00000578954 LRP2P98164 4655 aa8.71□□□□□ -1.02
SS18-211ENST00000578954 RPL37P61927 97 aaKnown RBP8.7□□□□□ -1.02
SS18-211ENST00000578954 FAM236AA0A1B0GUQ0 79 aa8.66□□□□□ -1.02
SS18-211ENST00000578954 FAM236BA0A1B0GV22 79 aa8.66□□□□□ -1.02
SS18-211ENST00000578954 TP53AIP1Q9HCN2 124 aa8.63□□□□□ -1.03
SS18-211ENST00000578954 NDUFS5O43920 106 aa8.62□□□□□ -1.03
SS18-211ENST00000578954 OCR1Q9BZK8 76 aa8.61□□□□□ -1.03
SS18-211ENST00000578954 SCGB1A1P11684 91 aa8.59□□□□□ -1.03
SS18-211ENST00000578954 LORP23490 312 aaPredicted RBP8.59□□□□□ -1.03
SS18-211ENST00000578954 ZCCHC13Q8WW36 166 aaKnown RBP8.59□□□□□ -1.03
SS18-211ENST00000578954 MUC17Q685J3 4493 aa8.58□□□□□ -1.04
SS18-211ENST00000578954 ATOX1O00244 68 aa8.57□□□□□ -1.04
SS18-211ENST00000578954 UQCRQO14949 82 aa8.57□□□□□ -1.04
SS18-211ENST00000578954 ATP11AUNQ6ZP68 121 aa8.57□□□□□ -1.04
SS18-211ENST00000578954 SEC61BP60468 96 aaKnown RBP8.56□□□□□ -1.04
SS18-211ENST00000578954 SMIM20Q8N5G0 67 aa8.56□□□□□ -1.04
SS18-211ENST00000578954 Q5W150 140 aa8.55□□□□□ -1.04
SS18-211ENST00000578954 PCOTHQ58A44 107 aa8.54□□□□□ -1.04
SS18-211ENST00000578954 TRAV7A0A075B6U4 112 aa8.51□□□□□ -1.05
SS18-211ENST00000578954 TRAV22A0A0B4J277 110 aa8.5□□□□□ -1.05
SS18-211ENST00000578954 C5orf47Q569G3 176 aa8.46□□□□□ -1.06
SS18-211ENST00000578954 SERP2Q8N6R1 65 aa8.46□□□□□ -1.06
SS18-211ENST00000578954 H0Y9P7 68 aa8.45□□□□□ -1.06
SS18-211ENST00000578954 H3BPC8 53 aa8.41□□□□□ -1.06
SS18-211ENST00000578954 IGKV2-30P06310 120 aa8.41□□□□□ -1.06
SS18-211ENST00000578954 MP68P56378 58 aa8.41□□□□□ -1.06
SS18-211ENST00000578954 KRTAP4-1Q9BYQ7 146 aa8.4□□□□□ -1.06
SS18-211ENST00000578954 UBR4Q5T4S7 5183 aa8.4□□□□□ -1.06
SS18-211ENST00000578954 LOC101927531A0A1B0GV80 90 aa8.39□□□□□ -1.07
SS18-211ENST00000578954 C7orf65Q6ZTY9 151 aa8.39□□□□□ -1.07
SS18-211ENST00000578954 SPINK7P58062 85 aa8.38□□□□□ -1.07
SS18-211ENST00000578954 ANAPC13Q9BS18 74 aa8.38□□□□□ -1.07
SS18-211ENST00000578954 LOC100996750A0A140TA64 210 aa8.37□□□□□ -1.07
SS18-211ENST00000578954 COX7CP15954 63 aa8.37□□□□□ -1.07
SS18-211ENST00000578954 KRTAP4-6Q9BYQ5 205 aa8.37□□□□□ -1.07
SS18-211ENST00000578954 LINC00208Q96KT6 92 aa8.36□□□□□ -1.07
SS18-211ENST00000578954 IGKV2D-30A0A075B6S6 120 aa8.35□□□□□ -1.07
SS18-211ENST00000578954 C1orf64Q8NEQ6 169 aa8.35□□□□□ -1.07
SS18-211ENST00000578954 A0A0U1RQV1 116 aa8.34□□□□□ -1.07
SS18-211ENST00000578954 CYP4F30PQ9H0H9 118 aa8.34□□□□□ -1.07
SS18-211ENST00000578954 HRES1P13985 223 aa8.31□□□□□ -1.08
SS18-211ENST00000578954 RNF213Q63HN8 5207 aa8.31□□□□□ -1.08
SS18-211ENST00000578954 C20orf197Q8N268 126 aa8.29□□□□□ -1.08
SS18-211ENST00000578954 KLKP1Q107X0 134 aa8.28□□□□□ -1.08
SS18-211ENST00000578954 MPLKIPQ8TAP9 179 aa8.27□□□□□ -1.09
SS18-211ENST00000578954 SNURFQ9Y675 71 aa8.25□□□□□ -1.09
SS18-211ENST00000578954 MUC2Q02817 5179 aa8.2□□□□□ -1.1
SS18-211ENST00000578954 CCDC179H3BU77 68 aa8.2□□□□□ -1.1
SS18-211ENST00000578954 KRTAP19-2Q3LHN2 52 aa8.18□□□□□ -1.1
SS18-211ENST00000578954 C4orf26Q17RF5 130 aa8.16□□□□□ -1.1
SS18-211ENST00000578954 RBM12B-AS1Q9P1G2 102 aa8.16□□□□□ -1.1
SS18-211ENST00000578954 NDUFC1O43677 76 aa8.15□□□□□ -1.1
SS18-211ENST00000578954 COX6B2Q6YFQ2 88 aa8.15□□□□□ -1.1
SS18-211ENST00000578954 CYSTM1Q9H1C7 97 aa8.15□□□□□ -1.1
SS18-211ENST00000578954 H7BZZ5 65 aa8.12□□□□□ -1.11
SS18-211ENST00000578954 SPANXA2-OT1Q8N9U9 137 aa8.1□□□□□ -1.11
SS18-211ENST00000578954 KRTAP3-1Q9BYR8 98 aa8.1□□□□□ -1.11
SS18-211ENST00000578954 PCP4P48539 62 aa8.09□□□□□ -1.11
SS18-211ENST00000578954 FAM236DA0A1B0GTK5 79 aa8.06□□□□□ -1.12
SS18-211ENST00000578954 A8MUN3 132 aa8.06□□□□□ -1.12
SS18-211ENST00000578954 FAM236CP0DP71 79 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms