RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 PKHD1L1Q86WI1 4243 aa5.21□□□□□ -1.58
VPS39-207ENST00000563692 Q5XG85 94 aa5.2□□□□□ -1.58
VPS39-207ENST00000563692 SPAG11AQ6PDA7 123 aa5.2□□□□□ -1.58
VPS39-207ENST00000563692 PRR15Q8IV56 129 aa5.2□□□□□ -1.58
VPS39-207ENST00000563692 SERP2Q8N6R1 65 aa5.2□□□□□ -1.58
VPS39-207ENST00000563692 LIMD2Q9BT23 127 aa5.2□□□□□ -1.58
VPS39-207ENST00000563692 HCG22E2RYF7 251 aa5.19□□□□□ -1.58
VPS39-207ENST00000563692 SPINK1P00995 79 aa5.19□□□□□ -1.58
VPS39-207ENST00000563692 KRTAP10-8P60410 259 aa5.19□□□□□ -1.58
VPS39-207ENST00000563692 TRAV7A0A075B6U4 112 aa5.18□□□□□ -1.58
VPS39-207ENST00000563692 UQCRQO14949 82 aa5.18□□□□□ -1.58
VPS39-207ENST00000563692 COX7CP15954 63 aa5.18□□□□□ -1.58
VPS39-207ENST00000563692 Q96NJ1 140 aa5.18□□□□□ -1.58
VPS39-207ENST00000563692 PRR26Q8N8Z3 221 aa5.17□□□□□ -1.58
VPS39-207ENST00000563692 LINC00304Q8N9R0 145 aa5.16□□□□□ -1.58
VPS39-207ENST00000563692 A0A1B0GVX0 72 aa5.15□□□□□ -1.59
VPS39-207ENST00000563692 RPS29P62273 56 aaKnown RBP5.15□□□□□ -1.59
VPS39-207ENST00000563692 CASC2Q6XLA1 102 aa5.15□□□□□ -1.59
VPS39-207ENST00000563692 IGHV6-1A0A0B4J1U7 121 aa5.13□□□□□ -1.59
VPS39-207ENST00000563692 CCDC179H3BU77 68 aa5.13□□□□□ -1.59
VPS39-207ENST00000563692 WFDC13Q8IUB5 93 aa5.13□□□□□ -1.59
VPS39-207ENST00000563692 HMCN2Q8NDA2 5059 aa5.12□□□□□ -1.59
VPS39-207ENST00000563692 hDV103S1A0JD37 113 aa5.12□□□□□ -1.59
VPS39-207ENST00000563692 C8orf87E5RJ46 101 aa5.12□□□□□ -1.59
VPS39-207ENST00000563692 C1orf195Q5TG92 126 aa5.12□□□□□ -1.59
VPS39-207ENST00000563692 C8orf17Q9NRJ1 99 aa5.12□□□□□ -1.59
VPS39-207ENST00000563692 TNXBP22105 4242 aa5.11□□□□□ -1.59
VPS39-207ENST00000563692 OCR1Q9BZK8 76 aa5.11□□□□□ -1.59
VPS39-207ENST00000563692 MMP24-AS1A0A0U1RRL7 71 aa5.1□□□□□ -1.59
VPS39-207ENST00000563692 C5orf47Q569G3 176 aa5.1□□□□□ -1.59
VPS39-207ENST00000563692 KRTAP3-3Q9BYR6 98 aa5.1□□□□□ -1.59
VPS39-207ENST00000563692 KRTAP3-2Q9BYR7 98 aa5.1□□□□□ -1.59
VPS39-207ENST00000563692 LINC00313P59037 77 aa5.09□□□□□ -1.59
VPS39-207ENST00000563692 TP53AIP1Q9HCN2 124 aa5.09□□□□□ -1.59
VPS39-207ENST00000563692 C20orf197Q8N268 126 aa5.08□□□□□ -1.6
VPS39-207ENST00000563692 TMEM254Q8TBM7 123 aa5.08□□□□□ -1.6
VPS39-207ENST00000563692 MRPL34Q9BQ48 92 aaKnown RBP5.07□□□□□ -1.6
VPS39-207ENST00000563692 MP68P56378 58 aa5.06□□□□□ -1.6
VPS39-207ENST00000563692 NDUFC1O43677 76 aa5.05□□□□□ -1.6
VPS39-207ENST00000563692 NDUFS5O43920 106 aa5.05□□□□□ -1.6
VPS39-207ENST00000563692 PRR4Q16378 134 aa5.05□□□□□ -1.6
VPS39-207ENST00000563692 KLKP1Q107X0 134 aa5.04□□□□□ -1.6
VPS39-207ENST00000563692 H3BPC8 53 aa5.03□□□□□ -1.6
VPS39-207ENST00000563692 NOTCH2NLQ7Z3S9 236 aa5.03□□□□□ -1.6
VPS39-207ENST00000563692 UBR4Q5T4S7 5183 aa5.02□□□□□ -1.61
VPS39-207ENST00000563692 LRP2P98164 4655 aa5.02□□□□□ -1.61
VPS39-207ENST00000563692 SNURFQ9Y675 71 aa5.02□□□□□ -1.61
VPS39-207ENST00000563692 A0A0U1RQV1 116 aa5.01□□□□□ -1.61
VPS39-207ENST00000563692 TRAV22A0A0B4J277 110 aa5□□□□□ -1.61
VPS39-207ENST00000563692 H0Y9P7 68 aa5□□□□□ -1.61
VPS39-207ENST00000563692 TMEM258P61165 79 aa4.99□□□□□ -1.61
VPS39-207ENST00000563692 Q8N9P0 234 aaPredicted RBP4.98□□□□□ -1.61
VPS39-207ENST00000563692 LINC00208Q96KT6 92 aa4.98□□□□□ -1.61
VPS39-207ENST00000563692 C1orf64Q8NEQ6 169 aa4.97□□□□□ -1.61
VPS39-207ENST00000563692 KRTAP16-1A8MUX0 517 aa4.95□□□□□ -1.62
VPS39-207ENST00000563692 H7BZZ5 65 aa4.95□□□□□ -1.62
VPS39-207ENST00000563692 FP248Q71RG6 208 aaPredicted RBP4.95□□□□□ -1.62
VPS39-207ENST00000563692 ZCCHC13Q8WW36 166 aaKnown RBP4.95□□□□□ -1.62
VPS39-207ENST00000563692 CYSTM1Q9H1C7 97 aa4.95□□□□□ -1.62
VPS39-207ENST00000563692 LOC101927531A0A1B0GV80 90 aa4.93□□□□□ -1.62
VPS39-207ENST00000563692 ATP5EP56381 51 aaPredicted RBP4.93□□□□□ -1.62
VPS39-207ENST00000563692 RETNLBQ9BQ08 111 aa4.93□□□□□ -1.62
VPS39-207ENST00000563692 FAM236DA0A1B0GTK5 79 aa4.92□□□□□ -1.62
VPS39-207ENST00000563692 FAM236CP0DP71 79 aa4.92□□□□□ -1.62
VPS39-207ENST00000563692 IGLV7-46A0A075B6I9 117 aa4.91□□□□□ -1.62
VPS39-207ENST00000563692 C9orf92A6NGG3 77 aa4.91□□□□□ -1.62
VPS39-207ENST00000563692 Q5W150 140 aa4.9□□□□□ -1.63
VPS39-207ENST00000563692 LPAP08519 4548 aa4.89□□□□□ -1.63
VPS39-207ENST00000563692 TPRXLQ17RH7 258 aa4.89□□□□□ -1.63
VPS39-207ENST00000563692 A8MUU9 505 aa4.88□□□□□ -1.63
VPS39-207ENST00000563692 KRTAP13-3Q3SY46 172 aa4.88□□□□□ -1.63
VPS39-207ENST00000563692 SPANXA2-OT1Q8N9U9 137 aa4.88□□□□□ -1.63
VPS39-207ENST00000563692 C20orf166-AS1Q96NR2 134 aa4.88□□□□□ -1.63
VPS39-207ENST00000563692 RNF213Q63HN8 5207 aa4.88□□□□□ -1.63
VPS39-207ENST00000563692 RPS28P62857 69 aaKnown RBP4.87□□□□□ -1.63
VPS39-207ENST00000563692 CYP4F30PQ9H0H9 118 aa4.86□□□□□ -1.63
VPS39-207ENST00000563692 IGKV2-30P06310 120 aa4.85□□□□□ -1.63
VPS39-207ENST00000563692 PCOTHQ58A44 107 aa4.85□□□□□ -1.63
VPS39-207ENST00000563692 Q75L30 129 aa4.84□□□□□ -1.63
VPS39-207ENST00000563692 SERP1Q9Y6X1 66 aa4.84□□□□□ -1.63
VPS39-207ENST00000563692 ATP11AUNQ6ZP68 121 aa4.83□□□□□ -1.64
VPS39-207ENST00000563692 IGKV2D-30A0A075B6S6 120 aa4.82□□□□□ -1.64
VPS39-207ENST00000563692 C7orf65Q6ZTY9 151 aa4.8□□□□□ -1.64
VPS39-207ENST00000563692 HRES1P13985 223 aa4.78□□□□□ -1.64
VPS39-207ENST00000563692 RPL37P61927 97 aaKnown RBP4.78□□□□□ -1.64
VPS39-207ENST00000563692 SEC61BP60468 96 aaKnown RBP4.77□□□□□ -1.65
VPS39-207ENST00000563692 XP32Q5T750 250 aa4.77□□□□□ -1.65
VPS39-207ENST00000563692 ACYP2P14621 99 aa4.76□□□□□ -1.65
VPS39-207ENST00000563692 SPINK7P58062 85 aa4.75□□□□□ -1.65
VPS39-207ENST00000563692 MUC2Q02817 5179 aa4.75□□□□□ -1.65
VPS39-207ENST00000563692 SMIM26A0A096LP01 95 aa4.74□□□□□ -1.65
VPS39-207ENST00000563692 A8MUN3 132 aa4.71□□□□□ -1.66
VPS39-207ENST00000563692 DMAC1Q96GE9 116 aa4.71□□□□□ -1.66
VPS39-207ENST00000563692 COA5Q86WW8 74 aa4.7□□□□□ -1.66
VPS39-207ENST00000563692 CHKB-CPT1BH3BT56 60 aa4.68□□□□□ -1.66
VPS39-207ENST00000563692 C4orf26Q17RF5 130 aa4.67□□□□□ -1.66
VPS39-207ENST00000563692 LCE2AQ5TA79 106 aaPredicted RBP4.66□□□□□ -1.66
VPS39-207ENST00000563692 V9GYY9 64 aa4.66□□□□□ -1.66
VPS39-207ENST00000563692 MUC17Q685J3 4493 aa4.65□□□□□ -1.66
VPS39-207ENST00000563692 COX6B2Q6YFQ2 88 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms