RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 CRYBG3Q68DQ2 2970 aa4.25□□□□□ -1.73
USP3-210ENST00000559192 NOTCH2NLQ7Z3S9 236 aa4.25□□□□□ -1.73
USP3-210ENST00000559192 KRTAP25-1Q3LHN0 102 aa4.25□□□□□ -1.73
USP3-210ENST00000559192 Q6ZR54 194 aa4.25□□□□□ -1.73
USP3-210ENST00000559192 ADM2Q7Z4H4 148 aa4.24□□□□□ -1.73
USP3-210ENST00000559192 WWC2-AS2Q96NR7 200 aa4.24□□□□□ -1.73
USP3-210ENST00000559192 FBN2P35556 2912 aa4.24□□□□□ -1.73
USP3-210ENST00000559192 USP24Q9UPU5 2620 aa4.23□□□□□ -1.73
USP3-210ENST00000559192 VPS13CQ709C8 3753 aa4.23□□□□□ -1.73
USP3-210ENST00000559192 H1FX-AS1Q4G0G2 97 aa4.21□□□□□ -1.74
USP3-210ENST00000559192 SPATA8Q6RVD6 105 aa4.21□□□□□ -1.74
USP3-210ENST00000559192 PLAC8Q9NZF1 115 aa4.2□□□□□ -1.74
USP3-210ENST00000559192 CSMD2Q7Z408 3487 aa4.19□□□□□ -1.74
USP3-210ENST00000559192 SMR3BP02814 79 aaPredicted RBP4.18□□□□□ -1.74
USP3-210ENST00000559192 SEC61BP60468 96 aaKnown RBP4.18□□□□□ -1.74
USP3-210ENST00000559192 S4R3F8 94 aa4.18□□□□□ -1.74
USP3-210ENST00000559192 MXRA5Q9NR99 2828 aa4.17□□□□□ -1.74
USP3-210ENST00000559192 R4GN34 69 aa4.17□□□□□ -1.74
USP3-210ENST00000559192 CELSR2Q9HCU4 2923 aa4.16□□□□□ -1.74
USP3-210ENST00000559192 FLNBO75369 2602 aaKnown RBP4.16□□□□□ -1.74
USP3-210ENST00000559192 APCP25054 2843 aa4.15□□□□□ -1.75
USP3-210ENST00000559192 TEP1Q99973 2627 aaKnown RBP4.15□□□□□ -1.75
USP3-210ENST00000559192 Q6ZSA8 131 aa4.14□□□□□ -1.75
USP3-210ENST00000559192 PLAC4Q8WY50 150 aa4.14□□□□□ -1.75
USP3-210ENST00000559192 J3QL48 77 aa4.13□□□□□ -1.75
USP3-210ENST00000559192 NF1P21359 2839 aa4.13□□□□□ -1.75
USP3-210ENST00000559192 KRTAP13-1Q8IUC0 172 aa4.13□□□□□ -1.75
USP3-210ENST00000559192 HIVEP1P15822 2718 aa4.13□□□□□ -1.75
USP3-210ENST00000559192 MAST4O15021 2626 aa4.13□□□□□ -1.75
USP3-210ENST00000559192 HELZ2Q9BYK8 2649 aaKnown RBP4.12□□□□□ -1.75
USP3-210ENST00000559192 DMBT1Q9UGM3 2413 aaPredicted RBP4.12□□□□□ -1.75
USP3-210ENST00000559192 UBR5O95071 2799 aaPredicted RBP4.12□□□□□ -1.75
USP3-210ENST00000559192 KRTAP10-2P60368 255 aa4.1□□□□□ -1.75
USP3-210ENST00000559192 C20orf166-AS1Q96NR2 134 aa4.09□□□□□ -1.75
USP3-210ENST00000559192 M0QZ58 72 aa4.09□□□□□ -1.75
USP3-210ENST00000559192 Q6ZRN7 208 aaPredicted RBP4.09□□□□□ -1.75
USP3-210ENST00000559192 MGAM2Q2M2H8 2515 aa4.09□□□□□ -1.75
USP3-210ENST00000559192 NBPF19A0A087WUL8 3843 aa4.09□□□□□ -1.76
USP3-210ENST00000559192 A8MUU9 505 aa4.08□□□□□ -1.76
USP3-210ENST00000559192 KRTAP10-1P60331 282 aa4.06□□□□□ -1.76
USP3-210ENST00000559192 NOTCH1P46531 2555 aa4.06□□□□□ -1.76
USP3-210ENST00000559192 ITPR2Q14571 2701 aa4.04□□□□□ -1.76
USP3-210ENST00000559192 ANK3Q12955 4377 aaKnown RBP4.04□□□□□ -1.76
USP3-210ENST00000559192 KRTAP13-2Q52LG2 175 aa4.02□□□□□ -1.77
USP3-210ENST00000559192 AKAP9Q99996 3911 aa4.02□□□□□ -1.77
USP3-210ENST00000559192 NSD1Q96L73 2696 aaPredicted RBP4.02□□□□□ -1.77
USP3-210ENST00000559192 NIPBLQ6KC79 2804 aaeCLIP4.01□□□□□ -1.77
USP3-210ENST00000559192 STAB1Q9NY15 2570 aa4.01□□□□□ -1.77
USP3-210ENST00000559192 M0R2T5 61 aa4.01□□□□□ -1.77
USP3-210ENST00000559192 NBEAL1Q6ZS30 2694 aa4.01□□□□□ -1.77
USP3-210ENST00000559192 COL6A5A8TX70 2615 aa3.99□□□□□ -1.77
USP3-210ENST00000559192 C10orf95Q9H7T3 257 aa3.98□□□□□ -1.77
USP3-210ENST00000559192 LCE2DQ5TA82 110 aaPredicted RBP3.95□□□□□ -1.78
USP3-210ENST00000559192 ZNF469Q96JG9 3925 aaPredicted RBP3.94□□□□□ -1.78
USP3-210ENST00000559192 PDZD2O15018 2839 aa3.93□□□□□ -1.78
USP3-210ENST00000559192 TENM3Q9P273 2699 aa3.93□□□□□ -1.78
USP3-210ENST00000559192 STAB2Q8WWQ8 2551 aa3.93□□□□□ -1.78
USP3-210ENST00000559192 KMT2BQ9UMN6 2715 aaPredicted RBP3.92□□□□□ -1.78
USP3-210ENST00000559192 VWFP04275 2813 aa3.92□□□□□ -1.78
USP3-210ENST00000559192 TRRAPQ9Y4A5 3859 aa3.92□□□□□ -1.78
USP3-210ENST00000559192 TENM1Q9UKZ4 2725 aa3.91□□□□□ -1.78
USP3-210ENST00000559192 KRTAP13-3Q3SY46 172 aa3.9□□□□□ -1.79
USP3-210ENST00000559192 TENM4Q6N022 2769 aa3.89□□□□□ -1.79
USP3-210ENST00000559192 H0YAA0 97 aa3.89□□□□□ -1.79
USP3-210ENST00000559192 P0C880 135 aa3.86□□□□□ -1.79
USP3-210ENST00000559192 KRTAP1-4P0C5Y4 121 aa3.85□□□□□ -1.79
USP3-210ENST00000559192 PKD1L1Q8TDX9 2849 aa3.84□□□□□ -1.79
USP3-210ENST00000559192 TNP1P09430 55 aa3.84□□□□□ -1.8
USP3-210ENST00000559192 RPS29P62273 56 aaKnown RBP3.83□□□□□ -1.8
USP3-210ENST00000559192 PP632Q6XCG6 107 aa3.81□□□□□ -1.8
USP3-210ENST00000559192 Q5VSD8 79 aa3.8□□□□□ -1.8
USP3-210ENST00000559192 OTOGQ6ZRI0 2925 aa3.79□□□□□ -1.8
USP3-210ENST00000559192 HUWE1Q7Z6Z7 4374 aaKnown RBP3.79□□□□□ -1.8
USP3-210ENST00000559192 CSMD3Q7Z407 3707 aa3.79□□□□□ -1.8
USP3-210ENST00000559192 KRTAP10-8P60410 259 aa3.77□□□□□ -1.81
USP3-210ENST00000559192 SRRM2Q9UQ35 2752 aaKnown RBP3.76□□□□□ -1.81
USP3-210ENST00000559192 FBN1P35555 2871 aaKnown RBP3.76□□□□□ -1.81
USP3-210ENST00000559192 TGP01266 2768 aa3.75□□□□□ -1.81
USP3-210ENST00000559192 DNAH10Q8IVF4 4471 aa3.71□□□□□ -1.82
USP3-210ENST00000559192 KRTAP3-1Q9BYR8 98 aa3.67□□□□□ -1.82
USP3-210ENST00000559192 XP32Q5T750 250 aa3.66□□□□□ -1.82
USP3-210ENST00000559192 KRTAP12-2P59991 146 aa3.62□□□□□ -1.83
USP3-210ENST00000559192 TPRXLQ17RH7 258 aa3.62□□□□□ -1.83
USP3-210ENST00000559192 TENM2Q9NT68 2774 aa3.61□□□□□ -1.83
USP3-210ENST00000559192 DNAH1Q9P2D7 4330 aa3.6□□□□□ -1.83
USP3-210ENST00000559192 KRTAP13-4Q3LI77 160 aa3.59□□□□□ -1.83
USP3-210ENST00000559192 ANK2Q01484 3957 aa3.59□□□□□ -1.84
USP3-210ENST00000559192 FBN3Q75N90 2809 aa3.58□□□□□ -1.84
USP3-210ENST00000559192 DNAH9Q9NYC9 4486 aa3.57□□□□□ -1.84
USP3-210ENST00000559192 LYSTQ99698 3801 aa3.56□□□□□ -1.84
USP3-210ENST00000559192 COL7A1Q02388 2944 aa3.56□□□□□ -1.84
USP3-210ENST00000559192 ALMS1Q8TCU4 4167 aa3.55□□□□□ -1.84
USP3-210ENST00000559192 DNAH3Q8TD57 4116 aa3.55□□□□□ -1.84
USP3-210ENST00000559192 PLECQ15149 4684 aaKnown RBP3.55□□□□□ -1.84
USP3-210ENST00000559192 CMYA5Q8N3K9 4069 aa3.54□□□□□ -1.84
USP3-210ENST00000559192 MEGF8Q7Z7M0 2845 aa3.54□□□□□ -1.84
USP3-210ENST00000559192 FRAS1Q86XX4 4008 aa3.54□□□□□ -1.84
USP3-210ENST00000559192 KRTAP10-6P60371 365 aaPredicted RBP3.53□□□□□ -1.84
USP3-210ENST00000559192 KRTAP12-1P59990 96 aa3.52□□□□□ -1.85
USP3-210ENST00000559192 DNAH8Q96JB1 4490 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms