RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 IGKV4-1P06312 121 aa7.24□□□□□ -1.25
SHMT2-230ENST00000557427 A0A0G2JQZ4 141 aa7.23□□□□□ -1.25
SHMT2-230ENST00000557427 KRTAP13-2Q52LG2 175 aa7.23□□□□□ -1.25
SHMT2-230ENST00000557427 SMIM20Q8N5G0 67 aa7.22□□□□□ -1.25
SHMT2-230ENST00000557427 A0A087WSZ3 146 aa7.21□□□□□ -1.26
SHMT2-230ENST00000557427 KRTAP9-7A8MTY7 169 aa7.21□□□□□ -1.26
SHMT2-230ENST00000557427 FAM229BQ4G0N7 80 aa7.21□□□□□ -1.26
SHMT2-230ENST00000557427 DSCR10P59022 87 aa7.19□□□□□ -1.26
SHMT2-230ENST00000557427 C9orf153Q5TBE3 101 aa7.19□□□□□ -1.26
SHMT2-230ENST00000557427 TRAV7A0A075B6U4 112 aa7.18□□□□□ -1.26
SHMT2-230ENST00000557427 IGLV9-49A0A0B4J1Y8 123 aa7.18□□□□□ -1.26
SHMT2-230ENST00000557427 Q8N9L7 120 aa7.18□□□□□ -1.26
SHMT2-230ENST00000557427 LINC00304Q8N9R0 145 aa7.17□□□□□ -1.26
SHMT2-230ENST00000557427 RETNLBQ9BQ08 111 aa7.16□□□□□ -1.26
SHMT2-230ENST00000557427 KRTAP4-1Q9BYQ7 146 aa7.16□□□□□ -1.26
SHMT2-230ENST00000557427 K7EQZ3 153 aa7.14□□□□□ -1.27
SHMT2-230ENST00000557427 MOBPQ13875 183 aa7.14□□□□□ -1.27
SHMT2-230ENST00000557427 LINC00472Q9H8W2 130 aa7.14□□□□□ -1.27
SHMT2-230ENST00000557427 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.13□□□□□ -1.27
SHMT2-230ENST00000557427 TPRXLQ17RH7 258 aa7.13□□□□□ -1.27
SHMT2-230ENST00000557427 J3KT08 172 aa7.12□□□□□ -1.27
SHMT2-230ENST00000557427 SS18L2Q9UHA2 77 aa7.12□□□□□ -1.27
SHMT2-230ENST00000557427 C4orf48Q5BLP8 95 aa7.1□□□□□ -1.27
SHMT2-230ENST00000557427 SSBP3-AS1Q7Z2R9 100 aa7.1□□□□□ -1.27
SHMT2-230ENST00000557427 A8MWP4 228 aa7.09□□□□□ -1.27
SHMT2-230ENST00000557427 HCG22E2RYF7 251 aa7.09□□□□□ -1.27
SHMT2-230ENST00000557427 CD164Q04900 197 aa7.09□□□□□ -1.27
SHMT2-230ENST00000557427 DEFB116Q30KQ4 102 aa7.09□□□□□ -1.27
SHMT2-230ENST00000557427 LCE2CQ5TA81 110 aa7.09□□□□□ -1.27
SHMT2-230ENST00000557427 OCR1Q9BZK8 76 aa7.09□□□□□ -1.27
SHMT2-230ENST00000557427 SPAG11AQ6PDA7 123 aa7.07□□□□□ -1.28
SHMT2-230ENST00000557427 PRR15Q8IV56 129 aa7.07□□□□□ -1.28
SHMT2-230ENST00000557427 Q96NJ1 140 aa7.07□□□□□ -1.28
SHMT2-230ENST00000557427 IGLV7-46A0A075B6I9 117 aa7.06□□□□□ -1.28
SHMT2-230ENST00000557427 KLKP1Q107X0 134 aa7.05□□□□□ -1.28
SHMT2-230ENST00000557427 HRCT1Q6UXD1 115 aa7.05□□□□□ -1.28
SHMT2-230ENST00000557427 C20orf197Q8N268 126 aa7.05□□□□□ -1.28
SHMT2-230ENST00000557427 NDUFB1O75438 58 aa7.04□□□□□ -1.28
SHMT2-230ENST00000557427 CYSTM1Q9H1C7 97 aa7.03□□□□□ -1.28
SHMT2-230ENST00000557427 TMEM258P61165 79 aa7.02□□□□□ -1.29
SHMT2-230ENST00000557427 ASB16-AS1Q495Z4 193 aa7.02□□□□□ -1.29
SHMT2-230ENST00000557427 SPINK1P00995 79 aa7□□□□□ -1.29
SHMT2-230ENST00000557427 LORP23490 312 aaPredicted RBP7□□□□□ -1.29
SHMT2-230ENST00000557427 MT1HP80294 61 aa7□□□□□ -1.29
SHMT2-230ENST00000557427 KRTAP19-2Q3LHN2 52 aa7□□□□□ -1.29
SHMT2-230ENST00000557427 CASC2Q6XLA1 102 aa7□□□□□ -1.29
SHMT2-230ENST00000557427 WFDC13Q8IUB5 93 aa7□□□□□ -1.29
SHMT2-230ENST00000557427 TMEM254Q8TBM7 123 aa7□□□□□ -1.29
SHMT2-230ENST00000557427 MMP24-AS1A0A0U1RRL7 71 aa6.99□□□□□ -1.29
SHMT2-230ENST00000557427 NDUFC1O43677 76 aa6.99□□□□□ -1.29
SHMT2-230ENST00000557427 Q5XG85 94 aa6.98□□□□□ -1.29
SHMT2-230ENST00000557427 A0A1B0GVX0 72 aa6.97□□□□□ -1.29
SHMT2-230ENST00000557427 C5orf47Q569G3 176 aa6.97□□□□□ -1.29
SHMT2-230ENST00000557427 H7BZZ5 65 aa6.96□□□□□ -1.3
SHMT2-230ENST00000557427 SNURFQ9Y675 71 aa6.96□□□□□ -1.3
SHMT2-230ENST00000557427 KRTAP10-6P60371 365 aaPredicted RBP6.95□□□□□ -1.3
SHMT2-230ENST00000557427 C8orf17Q9NRJ1 99 aa6.95□□□□□ -1.3
SHMT2-230ENST00000557427 hDV103S1A0JD37 113 aa6.94□□□□□ -1.3
SHMT2-230ENST00000557427 FP248Q71RG6 208 aaPredicted RBP6.94□□□□□ -1.3
SHMT2-230ENST00000557427 KRTAP13-3Q3SY46 172 aa6.93□□□□□ -1.3
SHMT2-230ENST00000557427 LIMD2Q9BT23 127 aa6.92□□□□□ -1.3
SHMT2-230ENST00000557427 IGHV6-1A0A0B4J1U7 121 aa6.91□□□□□ -1.3
SHMT2-230ENST00000557427 ZCCHC13Q8WW36 166 aaKnown RBP6.91□□□□□ -1.3
SHMT2-230ENST00000557427 FAM236DA0A1B0GTK5 79 aa6.9□□□□□ -1.3
SHMT2-230ENST00000557427 H3BPC8 53 aa6.9□□□□□ -1.3
SHMT2-230ENST00000557427 FAM236CP0DP71 79 aa6.9□□□□□ -1.3
SHMT2-230ENST00000557427 RPS29P62273 56 aaKnown RBP6.9□□□□□ -1.3
SHMT2-230ENST00000557427 SSPOA2VEC9 5147 aa6.9□□□□□ -1.31
SHMT2-230ENST00000557427 C8orf87E5RJ46 101 aa6.89□□□□□ -1.31
SHMT2-230ENST00000557427 ATP5EP56381 51 aaPredicted RBP6.89□□□□□ -1.31
SHMT2-230ENST00000557427 SEC61BP60468 96 aaKnown RBP6.89□□□□□ -1.31
SHMT2-230ENST00000557427 RPS28P62857 69 aaKnown RBP6.89□□□□□ -1.31
SHMT2-230ENST00000557427 TP53AIP1Q9HCN2 124 aa6.89□□□□□ -1.31
SHMT2-230ENST00000557427 MP68P56378 58 aa6.88□□□□□ -1.31
SHMT2-230ENST00000557427 C1orf195Q5TG92 126 aa6.88□□□□□ -1.31
SHMT2-230ENST00000557427 MRPL34Q9BQ48 92 aaKnown RBP6.88□□□□□ -1.31
SHMT2-230ENST00000557427 USH2AO75445 5202 aa6.87□□□□□ -1.31
SHMT2-230ENST00000557427 H0Y9P7 68 aa6.86□□□□□ -1.31
SHMT2-230ENST00000557427 TRAV22A0A0B4J277 110 aa6.84□□□□□ -1.31
SHMT2-230ENST00000557427 NOTCH2NLQ7Z3S9 236 aa6.84□□□□□ -1.31
SHMT2-230ENST00000557427 SYNE2Q8WXH0 6885 aaKnown RBP6.82□□□□□ -1.32
SHMT2-230ENST00000557427 FCGBPQ9Y6R7 5405 aaPredicted RBP6.82□□□□□ -1.32
SHMT2-230ENST00000557427 LINC00208Q96KT6 92 aa6.82□□□□□ -1.32
SHMT2-230ENST00000557427 LINC00313P59037 77 aa6.8□□□□□ -1.32
SHMT2-230ENST00000557427 SERP1Q9Y6X1 66 aa6.8□□□□□ -1.32
SHMT2-230ENST00000557427 NDUFS5O43920 106 aa6.79□□□□□ -1.32
SHMT2-230ENST00000557427 C9orf92A6NGG3 77 aa6.78□□□□□ -1.32
SHMT2-230ENST00000557427 C1orf64Q8NEQ6 169 aa6.78□□□□□ -1.32
SHMT2-230ENST00000557427 XP32Q5T750 250 aa6.77□□□□□ -1.33
SHMT2-230ENST00000557427 FLGP20930 4061 aaPredicted RBP6.76□□□□□ -1.33
SHMT2-230ENST00000557427 Q8N9P0 234 aaPredicted RBP6.76□□□□□ -1.33
SHMT2-230ENST00000557427 KRTAP16-1A8MUX0 517 aa6.74□□□□□ -1.33
SHMT2-230ENST00000557427 SPANXA2-OT1Q8N9U9 137 aa6.74□□□□□ -1.33
SHMT2-230ENST00000557427 CYP4F30PQ9H0H9 118 aa6.74□□□□□ -1.33
SHMT2-230ENST00000557427 MACF1Q9UPN3 7388 aaKnown RBP6.73□□□□□ -1.33
SHMT2-230ENST00000557427 M0R2T5 61 aa6.73□□□□□ -1.33
SHMT2-230ENST00000557427 LOC101927531A0A1B0GV80 90 aa6.7□□□□□ -1.34
SHMT2-230ENST00000557427 PCOTHQ58A44 107 aa6.69□□□□□ -1.34
SHMT2-230ENST00000557427 Q5W150 140 aa6.69□□□□□ -1.34
SHMT2-230ENST00000557427 SMIM26A0A096LP01 95 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 100.6 ms