RNA–Protein interactions for RNA: ENST00000555067.1

VRK1-203, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 604 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-203ENST00000555067 PRKDCP78527 4128 aaKnown RBP0.72□□□□□ -2.29
VRK1-203ENST00000555067 M0QZ58 72 aa0.72□□□□□ -2.29
VRK1-203ENST00000555067 GPR98Q8WXG9 6306 aa0.72□□□□□ -2.29
VRK1-203ENST00000555067 PKD1L1Q8TDX9 2849 aa0.71□□□□□ -2.3
VRK1-203ENST00000555067 TMEM167AQ8TBQ9 72 aa0.71□□□□□ -2.3
VRK1-203ENST00000555067 DSPP15924 2871 aaKnown RBP0.71□□□□□ -2.3
VRK1-203ENST00000555067 PCNX1Q96RV3 2341 aa0.7□□□□□ -2.3
VRK1-203ENST00000555067 K7EIM0 57 aa0.7□□□□□ -2.3
VRK1-203ENST00000555067 HIVEP3Q5T1R4 2406 aa0.69□□□□□ -2.3
VRK1-203ENST00000555067 CELSR1Q9NYQ6 3014 aa0.68□□□□□ -2.3
VRK1-203ENST00000555067 RPL39P5Q59GN2 51 aa0.68□□□□□ -2.3
VRK1-203ENST00000555067 H3BNG1 76 aa0.67□□□□□ -2.3
VRK1-203ENST00000555067 TNP1P09430 55 aa0.67□□□□□ -2.3
VRK1-203ENST00000555067 C9orf92A6NGG3 77 aa0.66□□□□□ -2.3
VRK1-203ENST00000555067 MAP1BP46821 2468 aaKnown RBP0.65□□□□□ -2.3
VRK1-203ENST00000555067 IGSF10Q6WRI0 2623 aa0.65□□□□□ -2.31
VRK1-203ENST00000555067 DEFB108AA8MXU0 73 aa0.65□□□□□ -2.31
VRK1-203ENST00000555067 SPART-AS1P0CW21 52 aa0.65□□□□□ -2.31
VRK1-203ENST00000555067 DEFB110Q30KQ9 67 aa0.65□□□□□ -2.31
VRK1-203ENST00000555067 AKAP13Q12802 2813 aa0.65□□□□□ -2.31
VRK1-203ENST00000555067 WNK1Q9H4A3 2382 aa0.64□□□□□ -2.31
VRK1-203ENST00000555067 FAT4Q6V0I7 4981 aa0.64□□□□□ -2.31
VRK1-203ENST00000555067 HECTD1Q9ULT8 2610 aa0.63□□□□□ -2.31
VRK1-203ENST00000555067 MYCBP2O75592 4640 aa0.63□□□□□ -2.31
VRK1-203ENST00000555067 KMT2AQ03164 3969 aa0.61□□□□□ -2.31
VRK1-203ENST00000555067 CACNA1AO00555 2505 aa0.61□□□□□ -2.31
VRK1-203ENST00000555067 RHPN1-AS1Q9BWJ2 59 aa0.6□□□□□ -2.31
VRK1-203ENST00000555067 SETXQ7Z333 2677 aaKnown RBP0.6□□□□□ -2.31
VRK1-203ENST00000555067 HRNRQ86YZ3 2850 aaPredicted RBP0.59□□□□□ -2.31
VRK1-203ENST00000555067 APC2O95996 2303 aa0.59□□□□□ -2.31
VRK1-203ENST00000555067 NBASA2RRP1 2371 aa0.59□□□□□ -2.31
VRK1-203ENST00000555067 H3BUX3 64 aa0.59□□□□□ -2.31
VRK1-203ENST00000555067 APELAP0DMC3 54 aa0.59□□□□□ -2.31
VRK1-203ENST00000555067 A0A096LNI7 61 aa0.58□□□□□ -2.32
VRK1-203ENST00000555067 MUC5ACP98088 5654 aa0.58□□□□□ -2.32
VRK1-203ENST00000555067 CREBBPQ92793 2442 aa0.58□□□□□ -2.32
VRK1-203ENST00000555067 SPRR2DP22532 72 aa0.57□□□□□ -2.32
VRK1-203ENST00000555067 LPAP08519 4548 aa0.57□□□□□ -2.32
VRK1-203ENST00000555067 ACANP16112 2415 aa0.56□□□□□ -2.32
VRK1-203ENST00000555067 HTN1P15515 57 aa0.56□□□□□ -2.32
VRK1-203ENST00000555067 A0A0C4DFX4 3053 aa0.56□□□□□ -2.32
VRK1-203ENST00000555067 PRRC2CQ9Y520 2896 aaKnown RBP0.56□□□□□ -2.32
VRK1-203ENST00000555067 MDN1Q9NU22 5596 aa0.55□□□□□ -2.32
VRK1-203ENST00000555067 CEP290O15078 2479 aa0.55□□□□□ -2.32
VRK1-203ENST00000555067 MAST4O15021 2626 aa0.55□□□□□ -2.32
VRK1-203ENST00000555067 TNRC18O15417 2968 aaPredicted RBP0.55□□□□□ -2.32
VRK1-203ENST00000555067 PKD1L2Q7Z442 2459 aa0.54□□□□□ -2.32
VRK1-203ENST00000555067 DEFB1P60022 68 aa0.54□□□□□ -2.32
VRK1-203ENST00000555067 DEFB136Q30KP8 78 aa0.54□□□□□ -2.32
VRK1-203ENST00000555067 PHGR1C9JFL3 82 aa0.53□□□□□ -2.32
VRK1-203ENST00000555067 DEFB124Q8NES8 71 aa0.51□□□□□ -2.33
VRK1-203ENST00000555067 NSD1Q96L73 2696 aaPredicted RBP0.51□□□□□ -2.33
VRK1-203ENST00000555067 MACF1Q9UPN3 7388 aaKnown RBP0.5□□□□□ -2.33
VRK1-203ENST00000555067 COL6A5A8TX70 2615 aa0.5□□□□□ -2.33
VRK1-203ENST00000555067 KRTAP8-1Q8IUC2 63 aa0.5□□□□□ -2.33
VRK1-203ENST00000555067 DMBT1Q9UGM3 2413 aaPredicted RBP0.5□□□□□ -2.33
VRK1-203ENST00000555067 STATHP02808 62 aa0.49□□□□□ -2.33
VRK1-203ENST00000555067 SPRR2BP35325 72 aa0.49□□□□□ -2.33
VRK1-203ENST00000555067 LYSTQ99698 3801 aa0.48□□□□□ -2.33
VRK1-203ENST00000555067 DCHS2Q6V1P9 2916 aa0.48□□□□□ -2.33
VRK1-203ENST00000555067 DEFB133Q30KQ1 61 aa0.47□□□□□ -2.33
VRK1-203ENST00000555067 SYNE2Q8WXH0 6885 aaKnown RBP0.47□□□□□ -2.33
VRK1-203ENST00000555067 HECTD4Q9Y4D8 3996 aa0.47□□□□□ -2.33
VRK1-203ENST00000555067 FLNBO75369 2602 aaKnown RBP0.46□□□□□ -2.34
VRK1-203ENST00000555067 SRRM2Q9UQ35 2752 aaKnown RBP0.46□□□□□ -2.34
VRK1-203ENST00000555067 VPS13DQ5THJ4 4388 aa0.46□□□□□ -2.34
VRK1-203ENST00000555067 DNAH11Q96DT5 4516 aa0.46□□□□□ -2.34
VRK1-203ENST00000555067 HMCN2Q8NDA2 5059 aa0.45□□□□□ -2.34
VRK1-203ENST00000555067 CCDC168Q8NDH2 2452 aa0.45□□□□□ -2.34
VRK1-203ENST00000555067 SPRR2AP35326 72 aa0.45□□□□□ -2.34
VRK1-203ENST00000555067 CHD7Q9P2D1 2997 aa0.45□□□□□ -2.34
VRK1-203ENST00000555067 HSPG2P98160 4391 aa0.45□□□□□ -2.34
VRK1-203ENST00000555067 TENM2Q9NT68 2774 aa0.44□□□□□ -2.34
VRK1-203ENST00000555067 SPTBN4Q9H254 2564 aa0.44□□□□□ -2.34
VRK1-203ENST00000555067 STAB1Q9NY15 2570 aa0.44□□□□□ -2.34
VRK1-203ENST00000555067 SACSQ9NZJ4 4579 aa0.44□□□□□ -2.34
VRK1-203ENST00000555067 A0A096LPF7 62 aa0.44□□□□□ -2.34
VRK1-203ENST00000555067 KRTAP6-2Q3LI66 62 aa0.44□□□□□ -2.34
VRK1-203ENST00000555067 ACACAQ13085 2346 aa0.44□□□□□ -2.34
VRK1-203ENST00000555067 DEFB108BQ8NET1 73 aa0.43□□□□□ -2.34
VRK1-203ENST00000555067 GCN1Q92616 2671 aaKnown RBP0.43□□□□□ -2.34
VRK1-203ENST00000555067 FLNCQ14315 2725 aa0.43□□□□□ -2.34
VRK1-203ENST00000555067 CRYBG3Q68DQ2 2970 aa0.42□□□□□ -2.34
VRK1-203ENST00000555067 SMR3BP02814 79 aaPredicted RBP0.42□□□□□ -2.34
VRK1-203ENST00000555067 MT1AP04731 61 aa0.42□□□□□ -2.34
VRK1-203ENST00000555067 PDZD2O15018 2839 aa0.42□□□□□ -2.34
VRK1-203ENST00000555067 SETD2Q9BYW2 2564 aaPredicted RBP0.42□□□□□ -2.34
VRK1-203ENST00000555067 VPS13BQ7Z7G8 4022 aa0.41□□□□□ -2.34
VRK1-203ENST00000555067 FSIP2Q5CZC0 6907 aa0.41□□□□□ -2.34
VRK1-203ENST00000555067 MTORP42345 2549 aa0.41□□□□□ -2.34
VRK1-203ENST00000555067 ANK3Q12955 4377 aaKnown RBP0.4□□□□□ -2.35
VRK1-203ENST00000555067 DNAH2Q9P225 4427 aa0.4□□□□□ -2.35
VRK1-203ENST00000555067 KRTAP19-5Q3LI72 72 aa0.4□□□□□ -2.35
VRK1-203ENST00000555067 SPRR2FQ96RM1 72 aa0.4□□□□□ -2.35
VRK1-203ENST00000555067 RANBP2P49792 3224 aaKnown RBP0.4□□□□□ -2.35
VRK1-203ENST00000555067 KMT2DO14686 5537 aa0.4□□□□□ -2.35
VRK1-203ENST00000555067 NF1P21359 2839 aa0.39□□□□□ -2.35
VRK1-203ENST00000555067 PKHD1L1Q86WI1 4243 aa0.39□□□□□ -2.35
VRK1-203ENST00000555067 SPRR2EP22531 72 aa0.39□□□□□ -2.35
VRK1-203ENST00000555067 CD52P31358 61 aa0.39□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms