RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 IGHV6-1A0A0B4J1U7 121 aa4.49□□□□□ -1.69
LIMA1-213ENST00000552720 LINC00483Q53H64 154 aa4.49□□□□□ -1.69
LIMA1-213ENST00000552720 NOTCH2NLQ7Z3S9 236 aa4.49□□□□□ -1.69
LIMA1-213ENST00000552720 DNHD1Q96M86 4753 aa4.49□□□□□ -1.69
LIMA1-213ENST00000552720 IGLV5-52A0A0A0MRZ9 124 aa4.48□□□□□ -1.69
LIMA1-213ENST00000552720 A8MUN3 132 aa4.48□□□□□ -1.69
LIMA1-213ENST00000552720 LOC100996750A0A140TA64 210 aa4.48□□□□□ -1.69
LIMA1-213ENST00000552720 CD164Q04900 197 aa4.48□□□□□ -1.69
LIMA1-213ENST00000552720 KRTAP4-6Q9BYQ5 205 aa4.48□□□□□ -1.69
LIMA1-213ENST00000552720 C8orf17Q9NRJ1 99 aa4.48□□□□□ -1.69
LIMA1-213ENST00000552720 H3BPC8 53 aa4.47□□□□□ -1.69
LIMA1-213ENST00000552720 SPANXA2-OT1Q8N9U9 137 aa4.47□□□□□ -1.69
LIMA1-213ENST00000552720 A8MU10 97 aa4.47□□□□□ -1.69
LIMA1-213ENST00000552720 ASB16-AS1Q495Z4 193 aa4.47□□□□□ -1.69
LIMA1-213ENST00000552720 NDUFS5O43920 106 aa4.46□□□□□ -1.7
LIMA1-213ENST00000552720 A0A1B0GVX0 72 aa4.45□□□□□ -1.7
LIMA1-213ENST00000552720 ZNF861PO60384 105 aa4.45□□□□□ -1.7
LIMA1-213ENST00000552720 SPINK6Q6UWN8 80 aa4.45□□□□□ -1.7
LIMA1-213ENST00000552720 Q8N9P0 234 aaPredicted RBP4.45□□□□□ -1.7
LIMA1-213ENST00000552720 LRP1BQ9NZR2 4599 aa4.44□□□□□ -1.7
LIMA1-213ENST00000552720 PLAC8Q9NZF1 115 aa4.44□□□□□ -1.7
LIMA1-213ENST00000552720 Q5VV11 94 aa4.44□□□□□ -1.7
LIMA1-213ENST00000552720 Q6ZR54 194 aa4.44□□□□□ -1.7
LIMA1-213ENST00000552720 COA5Q86WW8 74 aa4.44□□□□□ -1.7
LIMA1-213ENST00000552720 ZNF706Q9Y5V0 76 aaPredicted RBP4.44□□□□□ -1.7
LIMA1-213ENST00000552720 PKD1P98161 4303 aa4.43□□□□□ -1.7
LIMA1-213ENST00000552720 IGLV7-46A0A075B6I9 117 aa4.43□□□□□ -1.7
LIMA1-213ENST00000552720 HYDINQ4G0P3 5121 aa4.43□□□□□ -1.7
LIMA1-213ENST00000552720 MRPL34Q9BQ48 92 aaKnown RBP4.43□□□□□ -1.7
LIMA1-213ENST00000552720 CDK2AP2O75956 126 aa4.42□□□□□ -1.7
LIMA1-213ENST00000552720 TP53AIP1Q9HCN2 124 aa4.42□□□□□ -1.7
LIMA1-213ENST00000552720 CIRBP-AS1Q8TBR5 109 aa4.41□□□□□ -1.7
LIMA1-213ENST00000552720 PRR15LQ9BU68 103 aa4.41□□□□□ -1.7
LIMA1-213ENST00000552720 Q5W150 140 aa4.4□□□□□ -1.7
LIMA1-213ENST00000552720 IGLV7-43P04211 117 aa4.4□□□□□ -1.71
LIMA1-213ENST00000552720 CHKB-CPT1BH3BT56 60 aa4.39□□□□□ -1.71
LIMA1-213ENST00000552720 C1orf134Q5TEV5 83 aa4.39□□□□□ -1.71
LIMA1-213ENST00000552720 FAT2Q9NYQ8 4349 aa4.39□□□□□ -1.71
LIMA1-213ENST00000552720 LY6G6CO95867 125 aa4.38□□□□□ -1.71
LIMA1-213ENST00000552720 KRTAP10-2P60368 255 aa4.38□□□□□ -1.71
LIMA1-213ENST00000552720 PMAIP1Q13794 54 aa4.38□□□□□ -1.71
LIMA1-213ENST00000552720 SPAG11AQ6PDA7 123 aa4.38□□□□□ -1.71
LIMA1-213ENST00000552720 LIMD2Q9BT23 127 aa4.38□□□□□ -1.71
LIMA1-213ENST00000552720 HRES1P13985 223 aa4.37□□□□□ -1.71
LIMA1-213ENST00000552720 VPS13BQ7Z7G8 4022 aa4.36□□□□□ -1.71
LIMA1-213ENST00000552720 KRTAP13-3Q3SY46 172 aa4.35□□□□□ -1.71
LIMA1-213ENST00000552720 RETNLBQ9BQ08 111 aa4.35□□□□□ -1.71
LIMA1-213ENST00000552720 LCA10Q71F78 164 aa4.34□□□□□ -1.71
LIMA1-213ENST00000552720 LOC101927531A0A1B0GV80 90 aa4.34□□□□□ -1.72
LIMA1-213ENST00000552720 PKHD1P08F94 4074 aa4.33□□□□□ -1.72
LIMA1-213ENST00000552720 A6NED7 52 aa4.33□□□□□ -1.72
LIMA1-213ENST00000552720 KRTAP13-2Q52LG2 175 aa4.33□□□□□ -1.72
LIMA1-213ENST00000552720 Q75L30 129 aa4.33□□□□□ -1.72
LIMA1-213ENST00000552720 PRR26Q8N8Z3 221 aa4.33□□□□□ -1.72
LIMA1-213ENST00000552720 SSBP3-AS1Q7Z2R9 100 aa4.31□□□□□ -1.72
LIMA1-213ENST00000552720 SPTSSBQ8NFR3 76 aa4.31□□□□□ -1.72
LIMA1-213ENST00000552720 LINC01558Q9Y6Z2 57 aa4.31□□□□□ -1.72
LIMA1-213ENST00000552720 KRTAP10-1P60331 282 aa4.31□□□□□ -1.72
LIMA1-213ENST00000552720 SPINK7P58062 85 aa4.3□□□□□ -1.72
LIMA1-213ENST00000552720 LINC00313P59037 77 aa4.3□□□□□ -1.72
LIMA1-213ENST00000552720 C8orf87E5RJ46 101 aa4.28□□□□□ -1.72
LIMA1-213ENST00000552720 XP32Q5T750 250 aa4.28□□□□□ -1.72
LIMA1-213ENST00000552720 KRTAP1-4P0C5Y4 121 aa4.27□□□□□ -1.73
LIMA1-213ENST00000552720 KRTAP23-1A1A580 65 aa4.26□□□□□ -1.73
LIMA1-213ENST00000552720 KRTAP16-1A8MUX0 517 aa4.26□□□□□ -1.73
LIMA1-213ENST00000552720 Q6ZSA8 131 aa4.26□□□□□ -1.73
LIMA1-213ENST00000552720 CDC42SE1Q9NRR8 79 aa4.26□□□□□ -1.73
LIMA1-213ENST00000552720 SACSQ9NZJ4 4579 aa4.25□□□□□ -1.73
LIMA1-213ENST00000552720 ACYP2P14621 99 aa4.25□□□□□ -1.73
LIMA1-213ENST00000552720 IGKV2-30P06310 120 aa4.24□□□□□ -1.73
LIMA1-213ENST00000552720 ATP11AUNQ6ZP68 121 aa4.24□□□□□ -1.73
LIMA1-213ENST00000552720 DMAC1Q96GE9 116 aa4.24□□□□□ -1.73
LIMA1-213ENST00000552720 FAT1Q14517 4588 aa4.23□□□□□ -1.73
LIMA1-213ENST00000552720 IGKV2D-30A0A075B6S6 120 aa4.22□□□□□ -1.73
LIMA1-213ENST00000552720 A6NN06 94 aa4.22□□□□□ -1.73
LIMA1-213ENST00000552720 DYNC1H1Q14204 4646 aaKnown RBP4.22□□□□□ -1.73
LIMA1-213ENST00000552720 RBM12B-AS1Q9P1G2 102 aa4.21□□□□□ -1.74
LIMA1-213ENST00000552720 KTN1-AS1Q86SY8 53 aa4.19□□□□□ -1.74
LIMA1-213ENST00000552720 TYMSOSQ8TAI1 123 aa4.19□□□□□ -1.74
LIMA1-213ENST00000552720 SEC61BP60468 96 aaKnown RBP4.17□□□□□ -1.74
LIMA1-213ENST00000552720 A0A1B0GU69 56 aa4.17□□□□□ -1.74
LIMA1-213ENST00000552720 C7orf65Q6ZTY9 151 aa4.16□□□□□ -1.74
LIMA1-213ENST00000552720 APOBP04114 4563 aaKnown RBP4.16□□□□□ -1.74
LIMA1-213ENST00000552720 SMR3BP02814 79 aaPredicted RBP4.16□□□□□ -1.74
LIMA1-213ENST00000552720 SPINK1P00995 79 aa4.15□□□□□ -1.75
LIMA1-213ENST00000552720 Q8N1X5 172 aa4.15□□□□□ -1.75
LIMA1-213ENST00000552720 KRTAP4-8Q9BYQ9 185 aa4.14□□□□□ -1.75
LIMA1-213ENST00000552720 PKHD1L1Q86WI1 4243 aa4.14□□□□□ -1.75
LIMA1-213ENST00000552720 LINC00304Q8N9R0 145 aa4.13□□□□□ -1.75
LIMA1-213ENST00000552720 C9orf92A6NGG3 77 aa4.12□□□□□ -1.75
LIMA1-213ENST00000552720 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.11□□□□□ -1.75
LIMA1-213ENST00000552720 KRTAP9-2Q9BYQ4 174 aa4.1□□□□□ -1.75
LIMA1-213ENST00000552720 SPATA8Q6RVD6 105 aa4.1□□□□□ -1.75
LIMA1-213ENST00000552720 ADM2Q7Z4H4 148 aa4.1□□□□□ -1.75
LIMA1-213ENST00000552720 MIR22HGQ0VDD5 57 aa4.09□□□□□ -1.75
LIMA1-213ENST00000552720 PRAC1Q96KF2 57 aa4.09□□□□□ -1.75
LIMA1-213ENST00000552720 KRTAP9-6A0A140TA67 174 aa4.08□□□□□ -1.76
LIMA1-213ENST00000552720 LRP1Q07954 4544 aaKnown RBP4.08□□□□□ -1.76
LIMA1-213ENST00000552720 KMT2CQ8NEZ4 4911 aaKnown RBP4.08□□□□□ -1.76
LIMA1-213ENST00000552720 UQCR11O14957 56 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms