RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 LAMA2P24043 3122 aaKnown RBP-0.61□□□□□ -2.51
VPS13A-213ENST00000539950 BIRC6Q9NR09 4857 aa-0.61□□□□□ -2.51
VPS13A-213ENST00000539950 H3BUT2 72 aa-0.61□□□□□ -2.51
VPS13A-213ENST00000539950 DEFA5Q01523 94 aa-0.61□□□□□ -2.51
VPS13A-213ENST00000539950 BVES-AS1Q5T3Y7 98 aa-0.61□□□□□ -2.51
VPS13A-213ENST00000539950 DEFB106AQ8N104 65 aa-0.61□□□□□ -2.51
VPS13A-213ENST00000539950 S100A13Q99584 98 aa-0.61□□□□□ -2.51
VPS13A-213ENST00000539950 SACSQ9NZJ4 4579 aa-0.61□□□□□ -2.51
VPS13A-213ENST00000539950 RYR1P21817 5038 aa-0.62□□□□□ -2.51
VPS13A-213ENST00000539950 ANKARQ7Z5J8 1434 aa-0.62□□□□□ -2.51
VPS13A-213ENST00000539950 CRIP1P50238 77 aa-0.62□□□□□ -2.51
VPS13A-213ENST00000539950 UBL5Q9BZL1 73 aa-0.62□□□□□ -2.51
VPS13A-213ENST00000539950 NRAPQ86VF7 1730 aa-0.62□□□□□ -2.51
VPS13A-213ENST00000539950 CCDC18Q5T9S5 1454 aa-0.62□□□□□ -2.51
VPS13A-213ENST00000539950 ABCA8O94911 1581 aa-0.62□□□□□ -2.51
VPS13A-213ENST00000539950 SMARCA2P51531 1590 aa-0.62□□□□□ -2.51
VPS13A-213ENST00000539950 A0A0C4DFX4 3053 aa-0.63□□□□□ -2.51
VPS13A-213ENST00000539950 TOGARAM1Q9Y4F4 1720 aa-0.63□□□□□ -2.51
VPS13A-213ENST00000539950 A0A087WXM4 84 aa-0.63□□□□□ -2.51
VPS13A-213ENST00000539950 WT1-ASQ06250 92 aa-0.63□□□□□ -2.51
VPS13A-213ENST00000539950 DEFB110Q30KQ9 67 aa-0.63□□□□□ -2.51
VPS13A-213ENST00000539950 C18orf32Q8TCD1 76 aa-0.63□□□□□ -2.51
VPS13A-213ENST00000539950 ACACAQ13085 2346 aa-0.63□□□□□ -2.51
VPS13A-213ENST00000539950 DNAH2Q9P225 4427 aa-0.63□□□□□ -2.51
VPS13A-213ENST00000539950 RRBP1Q9P2E9 1410 aaKnown RBP-0.64□□□□□ -2.51
VPS13A-213ENST00000539950 LMTK2Q8IWU2 1503 aa-0.64□□□□□ -2.51
VPS13A-213ENST00000539950 PARP4Q9UKK3 1724 aaKnown RBP-0.64□□□□□ -2.51
VPS13A-213ENST00000539950 BPTFQ12830 3046 aa-0.64□□□□□ -2.51
VPS13A-213ENST00000539950 FRYQ5TBA9 3013 aa-0.64□□□□□ -2.51
VPS13A-213ENST00000539950 KIF1AQ12756 1690 aa-0.64□□□□□ -2.51
VPS13A-213ENST00000539950 DNAH1Q9P2D7 4330 aa-0.64□□□□□ -2.51
VPS13A-213ENST00000539950 RPS27P42677 84 aaKnown RBP-0.64□□□□□ -2.51
VPS13A-213ENST00000539950 DEFB114Q30KQ6 69 aa-0.64□□□□□ -2.51
VPS13A-213ENST00000539950 RPS27LQ71UM5 84 aaKnown RBP-0.64□□□□□ -2.51
VPS13A-213ENST00000539950 TEX15Q9BXT5 2789 aa-0.64□□□□□ -2.51
VPS13A-213ENST00000539950 PLECQ15149 4684 aaKnown RBP-0.65□□□□□ -2.51
VPS13A-213ENST00000539950 IGLV5-48A0A075B6I7 105 aa-0.65□□□□□ -2.51
VPS13A-213ENST00000539950 KRTAP8-1Q8IUC2 63 aa-0.65□□□□□ -2.51
VPS13A-213ENST00000539950 COL12A1Q99715 3063 aa-0.65□□□□□ -2.51
VPS13A-213ENST00000539950 DIP2AQ14689 1571 aa-0.66□□□□□ -2.51
VPS13A-213ENST00000539950 LRRIQ1Q96JM4 1722 aa-0.66□□□□□ -2.51
VPS13A-213ENST00000539950 HYDINQ4G0P3 5121 aa-0.66□□□□□ -2.51
VPS13A-213ENST00000539950 ETDCA0A1B0GVM5 59 aa-0.66□□□□□ -2.52
VPS13A-213ENST00000539950 SMR3BP02814 79 aaPredicted RBP-0.66□□□□□ -2.52
VPS13A-213ENST00000539950 DEFB1P60022 68 aa-0.66□□□□□ -2.52
VPS13A-213ENST00000539950 ANKRD36CQ5JPF3 1778 aa-0.66□□□□□ -2.52
VPS13A-213ENST00000539950 CLASP1Q7Z460 1538 aa-0.67□□□□□ -2.52
VPS13A-213ENST00000539950 C3P01024 1663 aa-0.67□□□□□ -2.52
VPS13A-213ENST00000539950 MMP24-AS1A0A0U1RRL7 71 aa-0.67□□□□□ -2.52
VPS13A-213ENST00000539950 ENHOQ6UWT2 76 aa-0.67□□□□□ -2.52
VPS13A-213ENST00000539950 TIMM8BQ9Y5J9 83 aaPredicted RBP-0.67□□□□□ -2.52
VPS13A-213ENST00000539950 CDC42BPGQ6DT37 1551 aa-0.67□□□□□ -2.52
VPS13A-213ENST00000539950 DNAH8Q96JB1 4490 aa-0.68□□□□□ -2.52
VPS13A-213ENST00000539950 TNP1P09430 55 aa-0.68□□□□□ -2.52
VPS13A-213ENST00000539950 CCDC168Q8NDH2 2452 aa-0.68□□□□□ -2.52
VPS13A-213ENST00000539950 C5orf42Q9H799 3197 aa-0.68□□□□□ -2.52
VPS13A-213ENST00000539950 RNF213Q63HN8 5207 aa-0.68□□□□□ -2.52
VPS13A-213ENST00000539950 DOPEY1Q5JWR5 2465 aa-0.69□□□□□ -2.52
VPS13A-213ENST00000539950 TLN2Q9Y4G6 2542 aa-0.69□□□□□ -2.52
VPS13A-213ENST00000539950 MT1XP80297 61 aa-0.69□□□□□ -2.52
VPS13A-213ENST00000539950 MINOS1Q5TGZ0 78 aa-0.69□□□□□ -2.52
VPS13A-213ENST00000539950 RIF1Q5UIP0 2472 aaKnown RBP-0.69□□□□□ -2.52
VPS13A-213ENST00000539950 CDC42BPAQ5VT25 1732 aa-0.69□□□□□ -2.52
VPS13A-213ENST00000539950 DNHD1Q96M86 4753 aa-0.7□□□□□ -2.52
VPS13A-213ENST00000539950 H3BUA1 57 aa-0.7□□□□□ -2.52
VPS13A-213ENST00000539950 MT1EP04732 61 aa-0.7□□□□□ -2.52
VPS13A-213ENST00000539950 MYO5CQ9NQX4 1742 aa-0.7□□□□□ -2.52
VPS13A-213ENST00000539950 ABCC6O95255 1503 aa-0.7□□□□□ -2.52
VPS13A-213ENST00000539950 ASXL1Q8IXJ9 1541 aa-0.7□□□□□ -2.52
VPS13A-213ENST00000539950 ITPR1Q14643 2758 aa-0.7□□□□□ -2.52
VPS13A-213ENST00000539950 USP9XQ93008 2570 aaPredicted RBP-0.7□□□□□ -2.52
VPS13A-213ENST00000539950 MAST1Q9Y2H9 1570 aa-0.7□□□□□ -2.52
VPS13A-213ENST00000539950 CMYA5Q8N3K9 4069 aa-0.71□□□□□ -2.52
VPS13A-213ENST00000539950 SPENQ96T58 3664 aaKnown RBP-0.71□□□□□ -2.52
VPS13A-213ENST00000539950 LY75O60449 1722 aa-0.71□□□□□ -2.52
VPS13A-213ENST00000539950 CLPSL2Q6UWE3 100 aa-0.71□□□□□ -2.52
VPS13A-213ENST00000539950 C6orf48Q9UBA6 75 aa-0.71□□□□□ -2.52
VPS13A-213ENST00000539950 KIAA1109Q2LD37 5005 aa-0.71□□□□□ -2.52
VPS13A-213ENST00000539950 CELSR3Q9NYQ7 3312 aa-0.71□□□□□ -2.52
VPS13A-213ENST00000539950 DYNC2H1Q8NCM8 4307 aaKnown RBP-0.71□□□□□ -2.52
VPS13A-213ENST00000539950 MROH1Q8NDA8 1641 aa-0.71□□□□□ -2.52
VPS13A-213ENST00000539950 NEBP20929 6669 aa-0.72□□□□□ -2.52
VPS13A-213ENST00000539950 NIPBLQ6KC79 2804 aaeCLIP-0.72□□□□□ -2.52
VPS13A-213ENST00000539950 NCBP2-AS2Q69YL0 99 aa-0.72□□□□□ -2.52
VPS13A-213ENST00000539950 NOP10Q9NPE3 64 aaKnown RBP-0.72□□□□□ -2.52
VPS13A-213ENST00000539950 RYR2Q92736 4967 aa-0.72□□□□□ -2.52
VPS13A-213ENST00000539950 DNMBPQ6XZF7 1577 aa-0.72□□□□□ -2.52
VPS13A-213ENST00000539950 SPTBN5Q9NRC6 3674 aaKnown RBP-0.72□□□□□ -2.52
VPS13A-213ENST00000539950 RYR3Q15413 4870 aa-0.72□□□□□ -2.53
VPS13A-213ENST00000539950 SCRIBQ14160 1630 aa-0.73□□□□□ -2.53
VPS13A-213ENST00000539950 ABCA9Q8IUA7 1624 aa-0.73□□□□□ -2.53
VPS13A-213ENST00000539950 H3BVH4 76 aa-0.73□□□□□ -2.53
VPS13A-213ENST00000539950 ATXN8Q156A1 80 aa-0.73□□□□□ -2.53
VPS13A-213ENST00000539950 DYNC1H1Q14204 4646 aaKnown RBP-0.73□□□□□ -2.53
VPS13A-213ENST00000539950 CSMD1Q96PZ7 3565 aa-0.73□□□□□ -2.53
VPS13A-213ENST00000539950 TIAM1Q13009 1591 aa-0.74□□□□□ -2.53
VPS13A-213ENST00000539950 IQGAP3Q86VI3 1631 aa-0.74□□□□□ -2.53
VPS13A-213ENST00000539950 UGGT2Q9NYU1 1516 aa-0.74□□□□□ -2.53
VPS13A-213ENST00000539950 MADDQ8WXG6 1647 aa-0.75□□□□□ -2.53
VPS13A-213ENST00000539950 CHD7Q9P2D1 2997 aa-0.75□□□□□ -2.53
Retrieved 100 of 20,778 RNA–protein pairs in 111.9 ms