RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 MMP24-AS1A0A0U1RRL7 71 aa7.61□□□□□ -1.19
SFSWAP-208ENST00000539506 A0A087X002 238 aa7.6□□□□□ -1.19
SFSWAP-208ENST00000539506 NOTCH2NLQ7Z3S9 236 aa7.6□□□□□ -1.19
SFSWAP-208ENST00000539506 TGP01266 2768 aa7.59□□□□□ -1.19
SFSWAP-208ENST00000539506 SPINK6Q6UWN8 80 aa7.58□□□□□ -1.2
SFSWAP-208ENST00000539506 DNAH6Q9C0G6 4158 aa7.58□□□□□ -1.2
SFSWAP-208ENST00000539506 A0A087WTM6 91 aa7.58□□□□□ -1.2
SFSWAP-208ENST00000539506 KTN1-AS1Q86SY8 53 aa7.56□□□□□ -1.2
SFSWAP-208ENST00000539506 LIMD2Q9BT23 127 aa7.55□□□□□ -1.2
SFSWAP-208ENST00000539506 MOBPQ13875 183 aa7.55□□□□□ -1.2
SFSWAP-208ENST00000539506 RETNLBQ9BQ08 111 aa7.54□□□□□ -1.2
SFSWAP-208ENST00000539506 SPANXA2-OT1Q8N9U9 137 aa7.54□□□□□ -1.2
SFSWAP-208ENST00000539506 ALMS1Q8TCU4 4167 aa7.53□□□□□ -1.2
SFSWAP-208ENST00000539506 Q96NJ1 140 aa7.53□□□□□ -1.2
SFSWAP-208ENST00000539506 RTL8CO15255 209 aa7.52□□□□□ -1.21
SFSWAP-208ENST00000539506 SPINK7P58062 85 aa7.52□□□□□ -1.21
SFSWAP-208ENST00000539506 PSORS1C2Q9UIG4 136 aa7.52□□□□□ -1.21
SFSWAP-208ENST00000539506 IGLV7-46A0A075B6I9 117 aa7.52□□□□□ -1.21
SFSWAP-208ENST00000539506 Q6ZR54 194 aa7.52□□□□□ -1.21
SFSWAP-208ENST00000539506 DNAH11Q96DT5 4516 aa7.51□□□□□ -1.21
SFSWAP-208ENST00000539506 C8orf17Q9NRJ1 99 aa7.51□□□□□ -1.21
SFSWAP-208ENST00000539506 LINC00483Q53H64 154 aa7.5□□□□□ -1.21
SFSWAP-208ENST00000539506 DNAH5Q8TE73 4624 aa7.5□□□□□ -1.21
SFSWAP-208ENST00000539506 IGLV5-52A0A0A0MRZ9 124 aa7.49□□□□□ -1.21
SFSWAP-208ENST00000539506 HRES1P13985 223 aa7.49□□□□□ -1.21
SFSWAP-208ENST00000539506 WWC2-AS2Q96NR7 200 aa7.49□□□□□ -1.21
SFSWAP-208ENST00000539506 H3BPC8 53 aa7.48□□□□□ -1.21
SFSWAP-208ENST00000539506 CDK2AP2O75956 126 aa7.48□□□□□ -1.21
SFSWAP-208ENST00000539506 LOC101927531A0A1B0GV80 90 aa7.47□□□□□ -1.21
SFSWAP-208ENST00000539506 PLAC8Q9NZF1 115 aa7.47□□□□□ -1.21
SFSWAP-208ENST00000539506 Q75L30 129 aa7.45□□□□□ -1.22
SFSWAP-208ENST00000539506 Q5W150 140 aa7.45□□□□□ -1.22
SFSWAP-208ENST00000539506 HYDINQ4G0P3 5121 aa7.44□□□□□ -1.22
SFSWAP-208ENST00000539506 A0A1B0GVX0 72 aa7.43□□□□□ -1.22
SFSWAP-208ENST00000539506 ZNF861PO60384 105 aa7.43□□□□□ -1.22
SFSWAP-208ENST00000539506 ASB16-AS1Q495Z4 193 aa7.43□□□□□ -1.22
SFSWAP-208ENST00000539506 CIRBP-AS1Q8TBR5 109 aa7.42□□□□□ -1.22
SFSWAP-208ENST00000539506 MRPL34Q9BQ48 92 aaKnown RBP7.41□□□□□ -1.22
SFSWAP-208ENST00000539506 LRP1BQ9NZR2 4599 aa7.41□□□□□ -1.22
SFSWAP-208ENST00000539506 ATP11AUNQ6ZP68 121 aa7.41□□□□□ -1.22
SFSWAP-208ENST00000539506 PKD1P98161 4303 aa7.41□□□□□ -1.22
SFSWAP-208ENST00000539506 C1orf134Q5TEV5 83 aa7.39□□□□□ -1.23
SFSWAP-208ENST00000539506 CDC42SE1Q9NRR8 79 aa7.39□□□□□ -1.23
SFSWAP-208ENST00000539506 FAT2Q9NYQ8 4349 aa7.39□□□□□ -1.23
SFSWAP-208ENST00000539506 A6NN06 94 aa7.38□□□□□ -1.23
SFSWAP-208ENST00000539506 ZNF706Q9Y5V0 76 aaPredicted RBP7.38□□□□□ -1.23
SFSWAP-208ENST00000539506 PRAC1Q96KF2 57 aa7.38□□□□□ -1.23
SFSWAP-208ENST00000539506 TP53AIP1Q9HCN2 124 aa7.38□□□□□ -1.23
SFSWAP-208ENST00000539506 LINC01558Q9Y6Z2 57 aa7.38□□□□□ -1.23
SFSWAP-208ENST00000539506 LY6G6CO95867 125 aa7.36□□□□□ -1.23
SFSWAP-208ENST00000539506 KRTAP10-2P60368 255 aa7.36□□□□□ -1.23
SFSWAP-208ENST00000539506 IGLV7-43P04211 117 aa7.36□□□□□ -1.23
SFSWAP-208ENST00000539506 ADM2Q7Z4H4 148 aa7.36□□□□□ -1.23
SFSWAP-208ENST00000539506 VPS13BQ7Z7G8 4022 aa7.31□□□□□ -1.24
SFSWAP-208ENST00000539506 C7orf65Q6ZTY9 151 aa7.27□□□□□ -1.25
SFSWAP-208ENST00000539506 A0A0A0MQY5 61 aa7.27□□□□□ -1.25
SFSWAP-208ENST00000539506 LINC00313P59037 77 aa7.25□□□□□ -1.25
SFSWAP-208ENST00000539506 KRTAP10-1P60331 282 aa7.25□□□□□ -1.25
SFSWAP-208ENST00000539506 PKHD1P08F94 4074 aa7.24□□□□□ -1.25
SFSWAP-208ENST00000539506 KRTAP13-2Q52LG2 175 aa7.24□□□□□ -1.25
SFSWAP-208ENST00000539506 ACYP2P14621 99 aa7.23□□□□□ -1.25
SFSWAP-208ENST00000539506 IGKV2D-30A0A075B6S6 120 aa7.23□□□□□ -1.25
SFSWAP-208ENST00000539506 IGKV2-30P06310 120 aa7.23□□□□□ -1.25
SFSWAP-208ENST00000539506 SPINK1P00995 79 aa7.22□□□□□ -1.25
SFSWAP-208ENST00000539506 KRTAP13-3Q3SY46 172 aa7.22□□□□□ -1.25
SFSWAP-208ENST00000539506 Q6ZSA8 131 aa7.22□□□□□ -1.25
SFSWAP-208ENST00000539506 A0A1B0GU69 56 aa7.21□□□□□ -1.26
SFSWAP-208ENST00000539506 SSBP3-AS1Q7Z2R9 100 aa7.2□□□□□ -1.26
SFSWAP-208ENST00000539506 LINC01554Q52M75 96 aa7.17□□□□□ -1.26
SFSWAP-208ENST00000539506 KRTAP1-4P0C5Y4 121 aa7.16□□□□□ -1.26
SFSWAP-208ENST00000539506 SACSQ9NZJ4 4579 aa7.15□□□□□ -1.26
SFSWAP-208ENST00000539506 FLG2Q5D862 2391 aaPredicted RBP7.14□□□□□ -1.27
SFSWAP-208ENST00000539506 FAM229AH3BQW9 127 aa7.13□□□□□ -1.27
SFSWAP-208ENST00000539506 DMAC1Q96GE9 116 aa7.12□□□□□ -1.27
SFSWAP-208ENST00000539506 Q8N1X5 172 aa7.11□□□□□ -1.27
SFSWAP-208ENST00000539506 MIR22HGQ0VDD5 57 aa7.1□□□□□ -1.27
SFSWAP-208ENST00000539506 KRTAP16-1A8MUX0 517 aa7.09□□□□□ -1.27
SFSWAP-208ENST00000539506 DYNC1H1Q14204 4646 aaKnown RBP7.07□□□□□ -1.28
SFSWAP-208ENST00000539506 FAT1Q14517 4588 aa7.04□□□□□ -1.28
SFSWAP-208ENST00000539506 PLA2G1BP04054 148 aaKnown RBP7.04□□□□□ -1.28
SFSWAP-208ENST00000539506 UQCR11O14957 56 aa7.03□□□□□ -1.28
SFSWAP-208ENST00000539506 CSAG1Q6PB30 78 aa7.03□□□□□ -1.28
SFSWAP-208ENST00000539506 SPATA8Q6RVD6 105 aa7.02□□□□□ -1.29
SFSWAP-208ENST00000539506 DMBT1Q9UGM3 2413 aaPredicted RBP6.99□□□□□ -1.29
SFSWAP-208ENST00000539506 TYMSOSQ8TAI1 123 aa6.99□□□□□ -1.29
SFSWAP-208ENST00000539506 APOBP04114 4563 aaKnown RBP6.99□□□□□ -1.29
SFSWAP-208ENST00000539506 SMR3BP02814 79 aaPredicted RBP6.95□□□□□ -1.3
SFSWAP-208ENST00000539506 PKHD1L1Q86WI1 4243 aa6.95□□□□□ -1.3
SFSWAP-208ENST00000539506 CRIPTQ9P021 101 aa6.95□□□□□ -1.3
SFSWAP-208ENST00000539506 C9orf92A6NGG3 77 aa6.94□□□□□ -1.3
SFSWAP-208ENST00000539506 KMT2CQ8NEZ4 4911 aaKnown RBP6.91□□□□□ -1.3
SFSWAP-208ENST00000539506 RYR2Q92736 4967 aa6.9□□□□□ -1.3
SFSWAP-208ENST00000539506 LINC00304Q8N9R0 145 aa6.89□□□□□ -1.31
SFSWAP-208ENST00000539506 KRTAP10-4P60372 401 aaPredicted RBP6.88□□□□□ -1.31
SFSWAP-208ENST00000539506 A0A1B0GVY2 172 aa6.87□□□□□ -1.31
SFSWAP-208ENST00000539506 LCE2BO14633 110 aa6.86□□□□□ -1.31
SFSWAP-208ENST00000539506 H0YAA0 97 aa6.83□□□□□ -1.32
SFSWAP-208ENST00000539506 RPS29P62273 56 aaKnown RBP6.82□□□□□ -1.32
SFSWAP-208ENST00000539506 LRP1Q07954 4544 aaKnown RBP6.8□□□□□ -1.32
SFSWAP-208ENST00000539506 LCE2CQ5TA81 110 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms