RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 ZNF861PO60384 105 aa7.15□□□□□ -1.27
CLIP1-208ENST00000537004 SPINK6Q6UWN8 80 aa7.14□□□□□ -1.27
CLIP1-208ENST00000537004 ZNF706Q9Y5V0 76 aaPredicted RBP7.14□□□□□ -1.27
CLIP1-208ENST00000537004 LINC00483Q53H64 154 aa7.13□□□□□ -1.27
CLIP1-208ENST00000537004 Q8N9L7 120 aa7.13□□□□□ -1.27
CLIP1-208ENST00000537004 IGKV4-1P06312 121 aa7.12□□□□□ -1.27
CLIP1-208ENST00000537004 A0A087WSZ3 146 aa7.11□□□□□ -1.27
CLIP1-208ENST00000537004 IGLV7-43P04211 117 aa7.11□□□□□ -1.27
CLIP1-208ENST00000537004 IGLV9-49A0A0B4J1Y8 123 aa7.11□□□□□ -1.27
CLIP1-208ENST00000537004 SEC61GP60059 68 aa7.09□□□□□ -1.27
CLIP1-208ENST00000537004 TMEM254Q8TBM7 123 aa7.09□□□□□ -1.27
CLIP1-208ENST00000537004 UBR4Q5T4S7 5183 aa7.07□□□□□ -1.28
CLIP1-208ENST00000537004 DSCR10P59022 87 aa7.07□□□□□ -1.28
CLIP1-208ENST00000537004 ANAPC11Q9NYG5 84 aa7.07□□□□□ -1.28
CLIP1-208ENST00000537004 KRTAP10-8P60410 259 aa7.06□□□□□ -1.28
CLIP1-208ENST00000537004 LRP2P98164 4655 aa7.06□□□□□ -1.28
CLIP1-208ENST00000537004 MOBPQ13875 183 aa7.05□□□□□ -1.28
CLIP1-208ENST00000537004 DEFB116Q30KQ4 102 aa7.05□□□□□ -1.28
CLIP1-208ENST00000537004 A0A0U1RQV1 116 aa7.04□□□□□ -1.28
CLIP1-208ENST00000537004 K7EQZ3 153 aa7.04□□□□□ -1.28
CLIP1-208ENST00000537004 BRK1Q8WUW1 75 aa7.04□□□□□ -1.28
CLIP1-208ENST00000537004 PRR26Q8N8Z3 221 aa7.03□□□□□ -1.28
CLIP1-208ENST00000537004 C1orf195Q5TG92 126 aa7.02□□□□□ -1.29
CLIP1-208ENST00000537004 OCR1Q9BZK8 76 aa7.02□□□□□ -1.29
CLIP1-208ENST00000537004 KRTAP1-4P0C5Y4 121 aa7.01□□□□□ -1.29
CLIP1-208ENST00000537004 LINC00472Q9H8W2 130 aa7.01□□□□□ -1.29
CLIP1-208ENST00000537004 FAM229BQ4G0N7 80 aa7□□□□□ -1.29
CLIP1-208ENST00000537004 V9GYY9 64 aa7□□□□□ -1.29
CLIP1-208ENST00000537004 MPLKIPQ8TAP9 179 aa6.98□□□□□ -1.29
CLIP1-208ENST00000537004 HCG22E2RYF7 251 aa6.96□□□□□ -1.29
CLIP1-208ENST00000537004 A8MWP4 228 aa6.96□□□□□ -1.3
CLIP1-208ENST00000537004 Q96NJ1 140 aa6.95□□□□□ -1.3
CLIP1-208ENST00000537004 PRR15Q8IV56 129 aa6.94□□□□□ -1.3
CLIP1-208ENST00000537004 A0A087X002 238 aa6.93□□□□□ -1.3
CLIP1-208ENST00000537004 SSBP3-AS1Q7Z2R9 100 aa6.93□□□□□ -1.3
CLIP1-208ENST00000537004 LPAP08519 4548 aa6.93□□□□□ -1.3
CLIP1-208ENST00000537004 hDV103S1A0JD37 113 aa6.93□□□□□ -1.3
CLIP1-208ENST00000537004 WFDC13Q8IUB5 93 aa6.93□□□□□ -1.3
CLIP1-208ENST00000537004 RNF213Q63HN8 5207 aa6.92□□□□□ -1.3
CLIP1-208ENST00000537004 Q1T7F1 81 aa6.92□□□□□ -1.3
CLIP1-208ENST00000537004 CD164Q04900 197 aa6.91□□□□□ -1.3
CLIP1-208ENST00000537004 KRTAP13-2Q52LG2 175 aa6.91□□□□□ -1.3
CLIP1-208ENST00000537004 NDUFB1O75438 58 aa6.89□□□□□ -1.31
CLIP1-208ENST00000537004 CASC2Q6XLA1 102 aa6.88□□□□□ -1.31
CLIP1-208ENST00000537004 ZCCHC13Q8WW36 166 aaKnown RBP6.88□□□□□ -1.31
CLIP1-208ENST00000537004 MMP24-AS1A0A0U1RRL7 71 aa6.86□□□□□ -1.31
CLIP1-208ENST00000537004 C1orf64Q8NEQ6 169 aa6.86□□□□□ -1.31
CLIP1-208ENST00000537004 TYMSOSQ8TAI1 123 aa6.85□□□□□ -1.31
CLIP1-208ENST00000537004 CYP4F30PQ9H0H9 118 aa6.85□□□□□ -1.31
CLIP1-208ENST00000537004 A0A1B0GVX0 72 aa6.84□□□□□ -1.31
CLIP1-208ENST00000537004 PMAIP1Q13794 54 aa6.84□□□□□ -1.31
CLIP1-208ENST00000537004 IGHV6-1A0A0B4J1U7 121 aa6.83□□□□□ -1.32
CLIP1-208ENST00000537004 ASB16-AS1Q495Z4 193 aa6.83□□□□□ -1.32
CLIP1-208ENST00000537004 C8orf17Q9NRJ1 99 aa6.82□□□□□ -1.32
CLIP1-208ENST00000537004 TRAV22A0A0B4J277 110 aa6.8□□□□□ -1.32
CLIP1-208ENST00000537004 PRR4Q16378 134 aa6.79□□□□□ -1.32
CLIP1-208ENST00000537004 C4orf48Q5BLP8 95 aa6.78□□□□□ -1.32
CLIP1-208ENST00000537004 NOTCH2NLQ7Z3S9 236 aa6.77□□□□□ -1.32
CLIP1-208ENST00000537004 MP68P56378 58 aa6.76□□□□□ -1.33
CLIP1-208ENST00000537004 LINC00304Q8N9R0 145 aa6.76□□□□□ -1.33
CLIP1-208ENST00000537004 RETNLBQ9BQ08 111 aa6.76□□□□□ -1.33
CLIP1-208ENST00000537004 LIMD2Q9BT23 127 aa6.76□□□□□ -1.33
CLIP1-208ENST00000537004 PSPHP1O15172 72 aa6.76□□□□□ -1.33
CLIP1-208ENST00000537004 MUC2Q02817 5179 aa6.75□□□□□ -1.33
CLIP1-208ENST00000537004 MRPL34Q9BQ48 92 aaKnown RBP6.74□□□□□ -1.33
CLIP1-208ENST00000537004 H0Y9P7 68 aa6.74□□□□□ -1.33
CLIP1-208ENST00000537004 SPINK1P00995 79 aa6.74□□□□□ -1.33
CLIP1-208ENST00000537004 TP53AIP1Q9HCN2 124 aa6.73□□□□□ -1.33
CLIP1-208ENST00000537004 NDUFS5O43920 106 aa6.72□□□□□ -1.33
CLIP1-208ENST00000537004 SPANXA2-OT1Q8N9U9 137 aa6.72□□□□□ -1.33
CLIP1-208ENST00000537004 LINC00208Q96KT6 92 aa6.72□□□□□ -1.33
CLIP1-208ENST00000537004 A8MUN3 132 aa6.71□□□□□ -1.33
CLIP1-208ENST00000537004 C8orf87E5RJ46 101 aa6.71□□□□□ -1.33
CLIP1-208ENST00000537004 H3BPC8 53 aa6.71□□□□□ -1.34
CLIP1-208ENST00000537004 Q5VV11 94 aa6.7□□□□□ -1.34
CLIP1-208ENST00000537004 LINC00313P59037 77 aa6.69□□□□□ -1.34
CLIP1-208ENST00000537004 SPAG11AQ6PDA7 123 aa6.68□□□□□ -1.34
CLIP1-208ENST00000537004 RPS29P62273 56 aaKnown RBP6.67□□□□□ -1.34
CLIP1-208ENST00000537004 Q8N9P0 234 aaPredicted RBP6.66□□□□□ -1.34
CLIP1-208ENST00000537004 IGLV7-46A0A075B6I9 117 aa6.63□□□□□ -1.35
CLIP1-208ENST00000537004 CHKB-CPT1BH3BT56 60 aa6.63□□□□□ -1.35
CLIP1-208ENST00000537004 KTN1-AS1Q86SY8 53 aa6.62□□□□□ -1.35
CLIP1-208ENST00000537004 KRTAP16-1A8MUX0 517 aa6.61□□□□□ -1.35
CLIP1-208ENST00000537004 ATP11AUNQ6ZP68 121 aa6.61□□□□□ -1.35
CLIP1-208ENST00000537004 Q75L30 129 aa6.61□□□□□ -1.35
CLIP1-208ENST00000537004 LOC101927531A0A1B0GV80 90 aa6.6□□□□□ -1.35
CLIP1-208ENST00000537004 Q5W150 140 aa6.6□□□□□ -1.35
CLIP1-208ENST00000537004 PRR15LQ9BU68 103 aa6.6□□□□□ -1.35
CLIP1-208ENST00000537004 A8MU10 97 aa6.59□□□□□ -1.35
CLIP1-208ENST00000537004 KRTAP13-3Q3SY46 172 aa6.59□□□□□ -1.35
CLIP1-208ENST00000537004 TPRXLQ17RH7 258 aa6.58□□□□□ -1.36
CLIP1-208ENST00000537004 PCOTHQ58A44 107 aa6.56□□□□□ -1.36
CLIP1-208ENST00000537004 LCA10Q71F78 164 aa6.55□□□□□ -1.36
CLIP1-208ENST00000537004 COA5Q86WW8 74 aa6.54□□□□□ -1.36
CLIP1-208ENST00000537004 A6NED7 52 aa6.54□□□□□ -1.36
CLIP1-208ENST00000537004 CDC42SE1Q9NRR8 79 aa6.54□□□□□ -1.36
CLIP1-208ENST00000537004 A6NN06 94 aa6.53□□□□□ -1.36
CLIP1-208ENST00000537004 SPTSSBQ8NFR3 76 aa6.53□□□□□ -1.36
CLIP1-208ENST00000537004 RBM12B-AS1Q9P1G2 102 aa6.53□□□□□ -1.36
CLIP1-208ENST00000537004 LINC01558Q9Y6Z2 57 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms