RNA–Protein interactions for RNA: ENST00000528989.5

LDLRAD3-203, Transcript of low density lipoprotein receptor class A domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LDLRAD3, Length 1,879 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRAD3-203ENST00000528989 CXCL6P80162 114 aa13.7□□□□□ -0.22
LDLRAD3-203ENST00000528989 IGHV6-1A0A0B4J1U7 121 aa13.69□□□□□ -0.22
LDLRAD3-203ENST00000528989 NOTCH2NLQ7Z3S9 236 aa13.69□□□□□ -0.22
LDLRAD3-203ENST00000528989 LPAP08519 4548 aa13.68□□□□□ -0.22
LDLRAD3-203ENST00000528989 A0A1B0GVX0 72 aa13.66□□□□□ -0.22
LDLRAD3-203ENST00000528989 PRR15Q8IV56 129 aa13.66□□□□□ -0.22
LDLRAD3-203ENST00000528989 C9orf92A6NGG3 77 aa13.65□□□□□ -0.22
LDLRAD3-203ENST00000528989 NDUFB1O75438 58 aa13.65□□□□□ -0.22
LDLRAD3-203ENST00000528989 ATP5EP2Q5VTU8 51 aa13.63□□□□□ -0.23
LDLRAD3-203ENST00000528989 MT-ATP8P03928 68 aa13.61□□□□□ -0.23
LDLRAD3-203ENST00000528989 KRTAP13-3Q3SY46 172 aa13.59□□□□□ -0.23
LDLRAD3-203ENST00000528989 HMCN2Q8NDA2 5059 aa13.59□□□□□ -0.23
LDLRAD3-203ENST00000528989 HIST1H4AP62805 103 aaKnown RBP13.57□□□□□ -0.24
LDLRAD3-203ENST00000528989 LINC00313P59037 77 aa13.57□□□□□ -0.24
LDLRAD3-203ENST00000528989 C8orf17Q9NRJ1 99 aa13.55□□□□□ -0.24
LDLRAD3-203ENST00000528989 A0A087WVE0 104 aa13.53□□□□□ -0.24
LDLRAD3-203ENST00000528989 TPRXLQ17RH7 258 aa13.53□□□□□ -0.24
LDLRAD3-203ENST00000528989 MMP24-AS1A0A0U1RRL7 71 aa13.52□□□□□ -0.25
LDLRAD3-203ENST00000528989 LRP2P98164 4655 aa13.49□□□□□ -0.25
LDLRAD3-203ENST00000528989 C8orf87E5RJ46 101 aa13.48□□□□□ -0.25
LDLRAD3-203ENST00000528989 WFDC13Q8IUB5 93 aa13.48□□□□□ -0.25
LDLRAD3-203ENST00000528989 KRTAP16-1A8MUX0 517 aa13.47□□□□□ -0.25
LDLRAD3-203ENST00000528989 HCG22E2RYF7 251 aa13.44□□□□□ -0.26
LDLRAD3-203ENST00000528989 hDV103S1A0JD37 113 aa13.44□□□□□ -0.26
LDLRAD3-203ENST00000528989 XP32Q5T750 250 aa13.44□□□□□ -0.26
LDLRAD3-203ENST00000528989 CASC2Q6XLA1 102 aa13.42□□□□□ -0.26
LDLRAD3-203ENST00000528989 IMUPQ9GZP8 106 aa13.38□□□□□ -0.27
LDLRAD3-203ENST00000528989 MRPL34Q9BQ48 92 aaKnown RBP13.36□□□□□ -0.27
LDLRAD3-203ENST00000528989 TMEM254Q8TBM7 123 aa13.35□□□□□ -0.27
LDLRAD3-203ENST00000528989 C20orf166-AS1Q96NR2 134 aa13.32□□□□□ -0.28
LDLRAD3-203ENST00000528989 Q8N9P0 234 aaPredicted RBP13.31□□□□□ -0.28
LDLRAD3-203ENST00000528989 A8MUU9 505 aa13.29□□□□□ -0.28
LDLRAD3-203ENST00000528989 NDUFS5O43920 106 aa13.27□□□□□ -0.28
LDLRAD3-203ENST00000528989 Q75L30 129 aa13.27□□□□□ -0.29
LDLRAD3-203ENST00000528989 RPL37P61927 97 aaKnown RBP13.25□□□□□ -0.29
LDLRAD3-203ENST00000528989 FAM236AA0A1B0GUQ0 79 aa13.22□□□□□ -0.29
LDLRAD3-203ENST00000528989 FAM236BA0A1B0GV22 79 aa13.22□□□□□ -0.29
LDLRAD3-203ENST00000528989 SCGB1A1P11684 91 aa13.16□□□□□ -0.3
LDLRAD3-203ENST00000528989 PCOTHQ58A44 107 aa13.14□□□□□ -0.31
LDLRAD3-203ENST00000528989 ATP11AUNQ6ZP68 121 aa13.13□□□□□ -0.31
LDLRAD3-203ENST00000528989 UBR4Q5T4S7 5183 aa13.13□□□□□ -0.31
LDLRAD3-203ENST00000528989 Q5W150 140 aa13.12□□□□□ -0.31
LDLRAD3-203ENST00000528989 ZCCHC13Q8WW36 166 aaKnown RBP13.09□□□□□ -0.31
LDLRAD3-203ENST00000528989 OCR1Q9BZK8 76 aa13.08□□□□□ -0.32
LDLRAD3-203ENST00000528989 SEC61BP60468 96 aaKnown RBP13.06□□□□□ -0.32
LDLRAD3-203ENST00000528989 TP53AIP1Q9HCN2 124 aa13.06□□□□□ -0.32
LDLRAD3-203ENST00000528989 MUC2Q02817 5179 aa13.03□□□□□ -0.32
LDLRAD3-203ENST00000528989 MUC17Q685J3 4493 aa13.03□□□□□ -0.32
LDLRAD3-203ENST00000528989 UQCRQO14949 82 aa12.98□□□□□ -0.33
LDLRAD3-203ENST00000528989 ATOX1O00244 68 aa12.97□□□□□ -0.33
LDLRAD3-203ENST00000528989 KRTAP4-1Q9BYQ7 146 aa12.95□□□□□ -0.34
LDLRAD3-203ENST00000528989 TRAV22A0A0B4J277 110 aa12.93□□□□□ -0.34
LDLRAD3-203ENST00000528989 RNF213Q63HN8 5207 aa12.91□□□□□ -0.34
LDLRAD3-203ENST00000528989 TRAV7A0A075B6U4 112 aa12.9□□□□□ -0.34
LDLRAD3-203ENST00000528989 H0Y9P7 68 aa12.89□□□□□ -0.35
LDLRAD3-203ENST00000528989 SMIM20Q8N5G0 67 aa12.89□□□□□ -0.35
LDLRAD3-203ENST00000528989 IGKV2D-30A0A075B6S6 120 aa12.85□□□□□ -0.35
LDLRAD3-203ENST00000528989 IGKV2-30P06310 120 aa12.85□□□□□ -0.35
LDLRAD3-203ENST00000528989 SPINK7P58062 85 aa12.85□□□□□ -0.35
LDLRAD3-203ENST00000528989 C5orf47Q569G3 176 aa12.85□□□□□ -0.35
LDLRAD3-203ENST00000528989 SERP2Q8N6R1 65 aa12.83□□□□□ -0.36
LDLRAD3-203ENST00000528989 LINC00208Q96KT6 92 aa12.8□□□□□ -0.36
LDLRAD3-203ENST00000528989 MP68P56378 58 aa12.79□□□□□ -0.36
LDLRAD3-203ENST00000528989 C1orf64Q8NEQ6 169 aa12.78□□□□□ -0.36
LDLRAD3-203ENST00000528989 ANAPC13Q9BS18 74 aa12.76□□□□□ -0.37
LDLRAD3-203ENST00000528989 C7orf65Q6ZTY9 151 aa12.74□□□□□ -0.37
LDLRAD3-203ENST00000528989 CYP4F30PQ9H0H9 118 aa12.73□□□□□ -0.37
LDLRAD3-203ENST00000528989 LOC101927531A0A1B0GV80 90 aa12.71□□□□□ -0.37
LDLRAD3-203ENST00000528989 COX7CP15954 63 aa12.7□□□□□ -0.38
LDLRAD3-203ENST00000528989 C20orf197Q8N268 126 aa12.68□□□□□ -0.38
LDLRAD3-203ENST00000528989 SNURFQ9Y675 71 aa12.68□□□□□ -0.38
LDLRAD3-203ENST00000528989 HRES1P13985 223 aa12.67□□□□□ -0.38
LDLRAD3-203ENST00000528989 A0A0U1RQV1 116 aa12.66□□□□□ -0.38
LDLRAD3-203ENST00000528989 H3BPC8 53 aa12.65□□□□□ -0.38
LDLRAD3-203ENST00000528989 KLKP1Q107X0 134 aa12.63□□□□□ -0.39
LDLRAD3-203ENST00000528989 C4orf26Q17RF5 130 aa12.57□□□□□ -0.4
LDLRAD3-203ENST00000528989 MPLKIPQ8TAP9 179 aa12.56□□□□□ -0.4
LDLRAD3-203ENST00000528989 CCDC179H3BU77 68 aa12.55□□□□□ -0.4
LDLRAD3-203ENST00000528989 CYSTM1Q9H1C7 97 aa12.53□□□□□ -0.4
LDLRAD3-203ENST00000528989 KRTAP19-2Q3LHN2 52 aa12.5□□□□□ -0.41
LDLRAD3-203ENST00000528989 RBM12B-AS1Q9P1G2 102 aa12.46□□□□□ -0.41
LDLRAD3-203ENST00000528989 FAT4Q6V0I7 4981 aa12.46□□□□□ -0.41
LDLRAD3-203ENST00000528989 KRTAP3-1Q9BYR8 98 aa12.42□□□□□ -0.42
LDLRAD3-203ENST00000528989 COX6B2Q6YFQ2 88 aa12.4□□□□□ -0.42
LDLRAD3-203ENST00000528989 FAM236DA0A1B0GTK5 79 aa12.39□□□□□ -0.43
LDLRAD3-203ENST00000528989 FAM236CP0DP71 79 aa12.39□□□□□ -0.43
LDLRAD3-203ENST00000528989 LCE2CQ5TA81 110 aa12.38□□□□□ -0.43
LDLRAD3-203ENST00000528989 PCP4P48539 62 aa12.35□□□□□ -0.43
LDLRAD3-203ENST00000528989 H7BZZ5 65 aa12.34□□□□□ -0.43
LDLRAD3-203ENST00000528989 NDUFC1O43677 76 aa12.27□□□□□ -0.44
LDLRAD3-203ENST00000528989 H1FX-AS1Q4G0G2 97 aa12.24□□□□□ -0.45
LDLRAD3-203ENST00000528989 FLGP20930 4061 aaPredicted RBP12.21□□□□□ -0.45
LDLRAD3-203ENST00000528989 SPANXA2-OT1Q8N9U9 137 aa12.21□□□□□ -0.46
LDLRAD3-203ENST00000528989 DMAC1Q96GE9 116 aa12.19□□□□□ -0.46
LDLRAD3-203ENST00000528989 A8MUN3 132 aa12.14□□□□□ -0.47
LDLRAD3-203ENST00000528989 MT1HP80294 61 aa12.14□□□□□ -0.47
LDLRAD3-203ENST00000528989 ACYP2P14621 99 aa12.06□□□□□ -0.48
LDLRAD3-203ENST00000528989 LCA10Q71F78 164 aa12.06□□□□□ -0.48
LDLRAD3-203ENST00000528989 S4R3F8 94 aa12.05□□□□□ -0.48
LDLRAD3-203ENST00000528989 KRTAP3-3Q9BYR6 98 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms