RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 KRTAP29-1A8MX34 341 aaPredicted RBP10.96□□□□□ -0.65
VPS28-207ENST00000526977 TMEM254Q8TBM7 123 aa10.96□□□□□ -0.65
VPS28-207ENST00000526977 H7BZZ5 65 aa10.96□□□□□ -0.66
VPS28-207ENST00000526977 NDUFB1O75438 58 aa10.94□□□□□ -0.66
VPS28-207ENST00000526977 CASC2Q6XLA1 102 aa10.92□□□□□ -0.66
VPS28-207ENST00000526977 C4orf48Q5BLP8 95 aa10.92□□□□□ -0.66
VPS28-207ENST00000526977 A0A0U1RQV1 116 aa10.91□□□□□ -0.66
VPS28-207ENST00000526977 MMP24-AS1A0A0U1RRL7 71 aa10.89□□□□□ -0.67
VPS28-207ENST00000526977 SPAG11AQ6PDA7 123 aa10.89□□□□□ -0.67
VPS28-207ENST00000526977 KRTAP4-5Q9BYR2 181 aa10.88□□□□□ -0.67
VPS28-207ENST00000526977 LINC00304Q8N9R0 145 aa10.87□□□□□ -0.67
VPS28-207ENST00000526977 SPINK1P00995 79 aa10.87□□□□□ -0.67
VPS28-207ENST00000526977 NDUFC1O43677 76 aa10.86□□□□□ -0.67
VPS28-207ENST00000526977 KRTAP10-8P60410 259 aa10.86□□□□□ -0.67
VPS28-207ENST00000526977 A0A1B0GVX0 72 aa10.85□□□□□ -0.67
VPS28-207ENST00000526977 ASB16-AS1Q495Z4 193 aa10.85□□□□□ -0.67
VPS28-207ENST00000526977 IGHV6-1A0A0B4J1U7 121 aa10.84□□□□□ -0.67
VPS28-207ENST00000526977 hDV103S1A0JD37 113 aa10.84□□□□□ -0.67
VPS28-207ENST00000526977 C8orf17Q9NRJ1 99 aa10.84□□□□□ -0.67
VPS28-207ENST00000526977 Q5XG85 94 aa10.83□□□□□ -0.68
VPS28-207ENST00000526977 RPS29P62273 56 aaKnown RBP10.82□□□□□ -0.68
VPS28-207ENST00000526977 C5orf47Q569G3 176 aa10.82□□□□□ -0.68
VPS28-207ENST00000526977 OXTP01178 125 aa10.82□□□□□ -0.68
VPS28-207ENST00000526977 LIMD2Q9BT23 127 aa10.82□□□□□ -0.68
VPS28-207ENST00000526977 HERC2O95714 4834 aa10.81□□□□□ -0.68
VPS28-207ENST00000526977 FAM236DA0A1B0GTK5 79 aa10.81□□□□□ -0.68
VPS28-207ENST00000526977 FAM236CP0DP71 79 aa10.81□□□□□ -0.68
VPS28-207ENST00000526977 FLG2Q5D862 2391 aaPredicted RBP10.81□□□□□ -0.68
VPS28-207ENST00000526977 LRP1Q07954 4544 aaKnown RBP10.81□□□□□ -0.68
VPS28-207ENST00000526977 RPS28P62857 69 aaKnown RBP10.8□□□□□ -0.68
VPS28-207ENST00000526977 NOTCH2NLQ7Z3S9 236 aa10.79□□□□□ -0.68
VPS28-207ENST00000526977 ZCCHC13Q8WW36 166 aaKnown RBP10.79□□□□□ -0.68
VPS28-207ENST00000526977 FAT3Q8TDW7 4589 aa10.76□□□□□ -0.69
VPS28-207ENST00000526977 C1orf195Q5TG92 126 aa10.76□□□□□ -0.69
VPS28-207ENST00000526977 MT1HL1P0DM35 61 aa10.74□□□□□ -0.69
VPS28-207ENST00000526977 MYCBP2O75592 4640 aa10.73□□□□□ -0.69
VPS28-207ENST00000526977 TNXBP22105 4242 aa10.72□□□□□ -0.69
VPS28-207ENST00000526977 MP68P56378 58 aa10.7□□□□□ -0.7
VPS28-207ENST00000526977 MRPL34Q9BQ48 92 aaKnown RBP10.7□□□□□ -0.7
VPS28-207ENST00000526977 H0Y9P7 68 aa10.68□□□□□ -0.7
VPS28-207ENST00000526977 ATP5EP56381 51 aaPredicted RBP10.68□□□□□ -0.7
VPS28-207ENST00000526977 TP53AIP1Q9HCN2 124 aa10.68□□□□□ -0.7
VPS28-207ENST00000526977 LINC00208Q96KT6 92 aa10.67□□□□□ -0.7
VPS28-207ENST00000526977 ABCA13Q86UQ4 5058 aa10.66□□□□□ -0.7
VPS28-207ENST00000526977 SERP1Q9Y6X1 66 aa10.66□□□□□ -0.7
VPS28-207ENST00000526977 C8orf87E5RJ46 101 aa10.65□□□□□ -0.7
VPS28-207ENST00000526977 NDUFS5O43920 106 aa10.65□□□□□ -0.71
VPS28-207ENST00000526977 TRAV22A0A0B4J277 110 aa10.63□□□□□ -0.71
VPS28-207ENST00000526977 H3BPC8 53 aa10.63□□□□□ -0.71
VPS28-207ENST00000526977 LINC00313P59037 77 aa10.62□□□□□ -0.71
VPS28-207ENST00000526977 DMBT1Q9UGM3 2413 aaPredicted RBP10.6□□□□□ -0.71
VPS28-207ENST00000526977 C1orf64Q8NEQ6 169 aa10.6□□□□□ -0.71
VPS28-207ENST00000526977 J3QL48 77 aa10.57□□□□□ -0.72
VPS28-207ENST00000526977 Q5W150 140 aa10.52□□□□□ -0.73
VPS28-207ENST00000526977 RETNLBQ9BQ08 111 aa10.52□□□□□ -0.73
VPS28-207ENST00000526977 KRTAP16-1A8MUX0 517 aa10.51□□□□□ -0.73
VPS28-207ENST00000526977 Q8N9P0 234 aaPredicted RBP10.51□□□□□ -0.73
VPS28-207ENST00000526977 KRTAP13-3Q3SY46 172 aa10.49□□□□□ -0.73
VPS28-207ENST00000526977 FP248Q71RG6 208 aaPredicted RBP10.49□□□□□ -0.73
VPS28-207ENST00000526977 CYP4F30PQ9H0H9 118 aa10.48□□□□□ -0.73
VPS28-207ENST00000526977 PRR4Q16378 134 aa10.47□□□□□ -0.73
VPS28-207ENST00000526977 SPANXA2-OT1Q8N9U9 137 aa10.46□□□□□ -0.74
VPS28-207ENST00000526977 SMIM26A0A096LP01 95 aa10.43□□□□□ -0.74
VPS28-207ENST00000526977 PCOTHQ58A44 107 aa10.41□□□□□ -0.74
VPS28-207ENST00000526977 PCLOQ9Y6V0 5065 aa10.4□□□□□ -0.74
VPS28-207ENST00000526977 IGLV7-46A0A075B6I9 117 aa10.39□□□□□ -0.75
VPS28-207ENST00000526977 LOC101927531A0A1B0GV80 90 aa10.39□□□□□ -0.75
VPS28-207ENST00000526977 C4orf26Q17RF5 130 aa10.35□□□□□ -0.75
VPS28-207ENST00000526977 C9orf92A6NGG3 77 aa10.31□□□□□ -0.76
VPS28-207ENST00000526977 IGKV2-30P06310 120 aa10.27□□□□□ -0.77
VPS28-207ENST00000526977 TPRXLQ17RH7 258 aa10.25□□□□□ -0.77
VPS28-207ENST00000526977 MPLKIPQ8TAP9 179 aa10.24□□□□□ -0.77
VPS28-207ENST00000526977 C20orf166-AS1Q96NR2 134 aa10.21□□□□□ -0.77
VPS28-207ENST00000526977 A8MUU9 505 aa10.21□□□□□ -0.78
VPS28-207ENST00000526977 HRES1P13985 223 aa10.19□□□□□ -0.78
VPS28-207ENST00000526977 COA5Q86WW8 74 aa10.19□□□□□ -0.78
VPS28-207ENST00000526977 IGKV2D-30A0A075B6S6 120 aa10.17□□□□□ -0.78
VPS28-207ENST00000526977 Q1T7F1 81 aa10.16□□□□□ -0.78
VPS28-207ENST00000526977 XP32Q5T750 250 aa10.16□□□□□ -0.78
VPS28-207ENST00000526977 Q75L30 129 aa10.16□□□□□ -0.78
VPS28-207ENST00000526977 HERC1Q15751 4861 aa10.1□□□□□ -0.79
VPS28-207ENST00000526977 RPL37P61927 97 aaKnown RBP10.08□□□□□ -0.8
VPS28-207ENST00000526977 C7orf65Q6ZTY9 151 aa10.06□□□□□ -0.8
VPS28-207ENST00000526977 DMAC1Q96GE9 116 aa10.06□□□□□ -0.8
VPS28-207ENST00000526977 ATP11AUNQ6ZP68 121 aa10.05□□□□□ -0.8
VPS28-207ENST00000526977 ACYP2P14621 99 aa10.04□□□□□ -0.8
VPS28-207ENST00000526977 LPAP08519 4548 aa10.03□□□□□ -0.8
VPS28-207ENST00000526977 V9GYY9 64 aa10.02□□□□□ -0.8
VPS28-207ENST00000526977 PSPHP1O15172 72 aa9.99□□□□□ -0.81
VPS28-207ENST00000526977 HMCN2Q8NDA2 5059 aa9.96□□□□□ -0.82
VPS28-207ENST00000526977 A8MUN3 132 aa9.95□□□□□ -0.82
VPS28-207ENST00000526977 LRP2P98164 4655 aa9.95□□□□□ -0.82
VPS28-207ENST00000526977 SPINK7P58062 85 aa9.94□□□□□ -0.82
VPS28-207ENST00000526977 SEC61BP60468 96 aaKnown RBP9.92□□□□□ -0.82
VPS28-207ENST00000526977 Q5VV11 94 aa9.9□□□□□ -0.82
VPS28-207ENST00000526977 LINC01558Q9Y6Z2 57 aa9.89□□□□□ -0.83
VPS28-207ENST00000526977 CHKB-CPT1BH3BT56 60 aa9.88□□□□□ -0.83
VPS28-207ENST00000526977 PRR15LQ9BU68 103 aa9.87□□□□□ -0.83
VPS28-207ENST00000526977 BRK1Q8WUW1 75 aa9.84□□□□□ -0.83
VPS28-207ENST00000526977 KRTAP3-1Q9BYR8 98 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 1120.2 ms